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Conserved domains on  [gi|1933279499|gb|QPD90016|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Pithecopus gonzagai]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl31790
NADH dehydrogenase subunit 2; Provisional
 5-241 6.86e-113

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00070:

Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 327.26  E-value: 6.86e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   5 PLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQG 84
Cdd:MTH00070   42 PLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQG 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  85 STLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLS 164
Cdd:MTH00070  122 LDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLT 201

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933279499 165 LLNFIIYILMTSSLFLLFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMF 241
Cdd:MTH00070  202 LLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTL 278
 
Name Accession Description Interval E-value
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 5-241 6.86e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 327.26  E-value: 6.86e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   5 PLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQG 84
Cdd:MTH00070   42 PLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQG 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  85 STLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLS 164
Cdd:MTH00070  122 LDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLT 201

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933279499 165 LLNFIIYILMTSSLFLLFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMF 241
Cdd:MTH00070  202 LLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTL 278
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 13-229 1.62e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 93.15  E-value: 1.62e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  13 PRAIEAATKYFLTQAAASALILFSSIMNAWLAG-----------EWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV 81
Cdd:pfam00361  29 PRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSGLLLLFLLILVGFLFKSAQVPFHTWLPDA 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  82 LQGS-TLQTGLILSTWQKLAP-----MSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIA 155
Cdd:pfam00361 109 YEGApTPVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLI 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499 156 IV----KMSPQLSLLNFIIYILMTSSLFLLFMNL-----NTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPK 226
Cdd:pfam00361 189 ALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGK 268


                  ...
gi 1933279499 227 WLI 229
Cdd:pfam00361 269 FLI 271
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 12-189 8.17e-19

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 84.78  E-value: 8.17e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  12 HPRAIEAATKYFLTQAAASALILFSSIMNAWLAGE-------WAINTNMNPTP-----MVLLSIAIAMKLGVAPFHFWLP 79
Cdd:COG1007   148 DRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSlnlagiaAALAAGGANSPllllgLVLVLAGLAFKLSAVPFHMWTP 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  80 EVLQGSTLQTGLILSTWQKLAPMSLLIQL------SENTNLFLMMT-LGLLSTMIGGWGGINQTQLRKILAFSSIAHLGW 152
Cdd:COG1007   228 DVYEGAPTPVTAFLATAPKIAAFAALLRLlveafpGLAADWQLLLAvLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGY 307

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1933279499 153 M----IAIVKMSPQLSLLNFIIYILMTSSLFLLFMNLNTKN 189
Cdd:COG1007   308 LllglAAGTPLGVSAALFYLLAYLFMNLGAFAVILLLSRKG 348
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-189 9.48e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 78.45  E-value: 9.48e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  14 RAIEAATKYFLTQAAASALILFSSIM-------------NAWLAGEWAINTNMNpTPMVLLSIAIAMKLGVAPFHFWLPE 80
Cdd:TIGR01770 150 FSTEAGLKYFILGAFSSGLLLFGISLiygftgslnfedlLLFLSNGMLNISLLL-LGIVLILVGLLFKLSAVPFHMWVPD 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  81 VLQGSTLQTGLILSTWQKLAPMSLLIQLS-------ENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWM 153
Cdd:TIGR01770 229 VYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyilfgfSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYI 308

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1933279499 154 IAIV----KMSPQLSLLNFIIYILMTSSLFLLFMNLNTKN 189
Cdd:TIGR01770 309 LIGLlagtLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYK 348
 
Name Accession Description Interval E-value
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 5-241 6.86e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 327.26  E-value: 6.86e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   5 PLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQG 84
Cdd:MTH00070   42 PLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQG 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  85 STLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLS 164
Cdd:MTH00070  122 LDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLT 201

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933279499 165 LLNFIIYILMTSSLFLLFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMF 241
Cdd:MTH00070  202 LLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTL 278
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 5-238 1.34e-106

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 311.35  E-value: 1.34e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   5 PLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQG 84
Cdd:MTH00135   42 PLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQG 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  85 STLQTGLILSTWQKLAPMSLLIQLSeNTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLS 164
Cdd:MTH00135  122 LDLTTGLILSTWQKLAPFALILQIA-PTNPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLT 200

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1933279499 165 LLNFIIYILMTSSLFLLFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNL 238
Cdd:MTH00135  201 LLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDL 274
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 5-238 1.09e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 288.64  E-value: 1.09e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   5 PLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQG 84
Cdd:MTH00112   42 PLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQG 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  85 STLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLS 164
Cdd:MTH00112  122 STTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLT 201

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1933279499 165 LLNFIIYILMTSSLFLLFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNL 238
Cdd:MTH00112  202 LLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNM 275
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 5-237 1.50e-89

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 267.87  E-value: 1.50e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   5 PLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQG 84
Cdd:MTH00105   42 PILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQG 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  85 STLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLS 164
Cdd:MTH00105  122 IPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLT 201

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933279499 165 LLNFIIYILMTSSLFLLFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQN 237
Cdd:MTH00105  202 LLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNN 274
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 5-238 7.14e-72

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 222.92  E-value: 7.14e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   5 PLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQG 84
Cdd:MTH00200   42 PLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQG 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  85 STLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLS 164
Cdd:MTH00200  122 LSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLA 201

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1933279499 165 LLNFIIYILMTSSLFLLFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNL 238
Cdd:MTH00200  202 LLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGL 275
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 2-241 9.63e-67

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 209.79  E-value: 9.63e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   2 SAFPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV 81
Cdd:MTH00041   39 SIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  82 LQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSP 161
Cdd:MTH00041  119 LQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSP 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499 162 QLSLLNFIIYILMTSSLFLLFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNMF 241
Cdd:MTH00041  199 NASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILI 278
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 5-240 4.96e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 143.04  E-value: 4.96e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   5 PLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLagewaiNTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQG 84
Cdd:MTH00160   43 PLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN------LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEG 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  85 STLQTGLILSTWQKLAPMSLLiqlSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLS 164
Cdd:MTH00160  117 LSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLW 193

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1933279499 165 LLNFIIYILMTSSLFLLFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNM 240
Cdd:MTH00160  194 LIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFF 269
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 2-234 7.56e-38

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 134.52  E-value: 7.56e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   2 SAFPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNawlageWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV 81
Cdd:MTH00011   41 SFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMM------WSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSV 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  82 LQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSP 161
Cdd:MTH00011  115 MSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSP 194

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933279499 162 QLSLLNFIIYILMTSSLFLLFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELV 234
Cdd:MTH00011  195 SMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLT 267
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 3-196 2.27e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 128.08  E-value: 2.27e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   3 AFPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAIntnmnptpMVLLSIAIAMKLGVAPFHFWLPEVL 82
Cdd:MTH00144   40 FLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS--------MSLLLLGLCLKLGLFPFHFWVPSVM 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  83 QGSTLQTGLILSTWQKLAPMSLLIQLSENTNLF-LMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSP 161
Cdd:MTH00144  112 AGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAyLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGS 191

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1933279499 162 QLSLLNFIIYILMTSSLFLLFMNLNTKNITELSSS 196
Cdd:MTH00144  192 WLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL 226
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 5-238 2.45e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 109.38  E-value: 2.45e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   5 PLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAwlagewaINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQG 84
Cdd:MTH00197   36 PLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SNLYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMES 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  85 STLQTGLILSTWQKLAPMSLLIQLSENTnlFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLS 164
Cdd:MTH00197  109 LSWFNCFLLATWQKLAPLLILAFNSSSF--MGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIF 186

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1933279499 165 LLNFIIYILMTSSLFLLFMNLNTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNL 238
Cdd:MTH00197  187 MLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSLLSSNI 260
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 14-229 1.96e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 97.78  E-value: 1.96e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  14 RAIEAATKYFLTQAAASALILFSSIMNAWLAGE---WAINTNMN-PTPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQT 89
Cdd:MTH00199  145 YSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGEtsiQGINSILTgDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTIT 224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  90 GLILSTWQKLAPMSLLIQLSENTNLFLMMtlGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKM----SPQLSL 165
Cdd:MTH00199  225 TALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIgsfeSIQASL 302

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1933279499 166 LNFIIYILMTSSLFLLFMNLN-TKN-ITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLI 229
Cdd:MTH00199  303 IYMIIYVIMSICSFSIILSLKlTKGlIVEVSGLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLI 368
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 13-229 1.62e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 93.15  E-value: 1.62e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  13 PRAIEAATKYFLTQAAASALILFSSIMNAWLAG-----------EWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV 81
Cdd:pfam00361  29 PRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSGLLLLFLLILVGFLFKSAQVPFHTWLPDA 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  82 LQGS-TLQTGLILSTWQKLAP-----MSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIA 155
Cdd:pfam00361 109 YEGApTPVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLI 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499 156 IV----KMSPQLSLLNFIIYILMTSSLFLLFMNL-----NTKNITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPK 226
Cdd:pfam00361 189 ALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGK 268


                  ...
gi 1933279499 227 WLI 229
Cdd:pfam00361 269 FLI 271
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 17-237 1.62e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 94.33  E-value: 1.62e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  17 EAATKYFLTQAAASALILFS-------------SIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQ 83
Cdd:MTH00196   44 EAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYE 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  84 GSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLMmtLGLLSTMIGGWGGINQTQLRKILAFSSIAHLG---WMIAIVKM- 159
Cdd:MTH00196  124 GAPTKTTALLAIVPKLGIFSILVSIGLNVNILLI--GGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFe 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499 160 SPQLSLLNFIIYILMTSSLFLLFMNLNTKN--ITELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQN 237
Cdd:MTH00196  202 SIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQ 281
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 12-189 8.17e-19

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 84.78  E-value: 8.17e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  12 HPRAIEAATKYFLTQAAASALILFSSIMNAWLAGE-------WAINTNMNPTP-----MVLLSIAIAMKLGVAPFHFWLP 79
Cdd:COG1007   148 DRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSlnlagiaAALAAGGANSPllllgLVLVLAGLAFKLSAVPFHMWTP 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  80 EVLQGSTLQTGLILSTWQKLAPMSLLIQL------SENTNLFLMMT-LGLLSTMIGGWGGINQTQLRKILAFSSIAHLGW 152
Cdd:COG1007   228 DVYEGAPTPVTAFLATAPKIAAFAALLRLlveafpGLAADWQLLLAvLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGY 307

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1933279499 153 M----IAIVKMSPQLSLLNFIIYILMTSSLFLLFMNLNTKN 189
Cdd:COG1007   308 LllglAAGTPLGVSAALFYLLAYLFMNLGAFAVILLLSRKG 348
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-189 9.48e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 78.45  E-value: 9.48e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  14 RAIEAATKYFLTQAAASALILFSSIM-------------NAWLAGEWAINTNMNpTPMVLLSIAIAMKLGVAPFHFWLPE 80
Cdd:TIGR01770 150 FSTEAGLKYFILGAFSSGLLLFGISLiygftgslnfedlLLFLSNGMLNISLLL-LGIVLILVGLLFKLSAVPFHMWVPD 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  81 VLQGSTLQTGLILSTWQKLAPMSLLIQLS-------ENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWM 153
Cdd:TIGR01770 229 VYEGAPTPVTAFFSIVPKIAIFAVFLRLFlyilfgfSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYI 308

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1933279499 154 IAIV----KMSPQLSLLNFIIYILMTSSLFLLFMNLNTKN 189
Cdd:TIGR01770 309 LIGLlagtLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYK 348
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-195 2.36e-16

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 77.55  E-value: 2.36e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  14 RAIEAATKYFLTQAAASALILFSSIMNAWLAGEW-------AINTNMNPTP-----MVLLSIAIAMKLGVAPFHFWLPEV 81
Cdd:PRK05777  151 RSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLsfagiakALADGSGNSLlllfgLVFLLVGLAFKLSAVPFHMWTPDV 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  82 LQGSTLQTGLILSTWQKLAPMSLLIQLSEN-------TNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWM- 153
Cdd:PRK05777  231 YEGAPTPVTAFLATAPKIAAFAVLLRLLVVafgglseDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLl 310

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1933279499 154 ---IAIVKMSPQLSLLNFIIYILMTSSLF--LLFMNLNTKNITELSS 195
Cdd:PRK05777  311 vglAAGTAEGYSAVLFYLLAYLFMTLGAFgvISLLRRKGGEAESISD 357
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 2-234 1.25e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 72.49  E-value: 1.25e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   2 SAFPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEW----------AINTNMNPTPMVLLSIAIAMKLGV 71
Cdd:COG0651   142 ASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLnmadlaarlaELDPGLLLAAFALLLVGFGIKAAL 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  72 APFHFWLPE-----------VLQGSTLQTGL--ILSTWQKLAPMSLLIQLSEntnlfLMMTLGLLSTMIGGWGGINQTQL 138
Cdd:COG0651   222 FPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGT-----LLLVLGLLTMLVGALGALAQRDL 296

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499 139 RKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYI----LMTSSLFL----LFMNLNTKNITELSSSWFKTPTLISLSLLT 210
Cdd:COG0651   297 KRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLaagaIERATGTRDLDKLGGLGKRMPLTAAAFLIG 376

                         250       260
                  ....*....|....*....|....
gi 1933279499 211 LLSLSGLPPLTGFLPKWLIAQELV 234
Cdd:COG0651   377 ALALAGLPPLSGFVSKWLLLQAAL 400
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
13-185 1.69e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 66.23  E-value: 1.69e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  13 PRAIEAATKYFLTQAAASALILF-SSIMNAWLAGEW---AINTNMNPTPMVLLSIA-------IAMKLGVAPFHFWLPEV 81
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTqlsAIALALITSPSLGLALAlvfviagIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  82 LQGSTLQTGLILSTWQKLAPMSLLIQL--------SENTNlFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGW- 152
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAGFALAIRLlvtafpsfDEQWK-LLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFv 315

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1933279499 153 MIAIVkMSPQLSLLNFIIYILMtsslfLLFMNL 185
Cdd:PRK02504  316 MIGLV-AGTEAGYASMVFYLLA-----YLFMNL 342
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-194 3.01e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 62.59  E-value: 3.01e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   2 SAFPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAG--EWAINTNMNP------TPMVLLSIAIAMKLGVAP 73
Cdd:PRK08375  141 SSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGtlNMADLAGALAenptvvTAFGFVLLALALKAAVFP 220

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  74 FHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLS----------ENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILA 143
Cdd:PRK08375  221 LHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYftvfggdfrfALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLA 300

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1933279499 144 FSSIAHLGWMIAIVKMSPQLSLLNFIIYI----LMTSSLFL----LFMNLNTKNITELS 194
Cdd:PRK08375  301 YSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLaagaIEVTYGTRRLSELS 359
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 59-173 5.34e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 61.80  E-value: 5.34e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  59 VLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLmmTLGLLSTMIGGWGGINQTQL 138
Cdd:MTH00198  303 LFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLLL--SVAIISLVVGAFGALNQTRI 380

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1933279499 139 RKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYIL 173
Cdd:MTH00198  381 KRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAV 415
ndhB CHL00049
NADH dehydrogenase subunit 2
 14-226 8.69e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 61.17  E-value: 8.69e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  14 RAIEAATKYFLTQAAASALIL--FSsimnaWLAG------------EWAINTNMNPTPMVLLSIA-----IAMKLGVAPF 74
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFS-----WLYGlsggeielqeivNGLINTQMYNSPGISIALIfitvgIGFKLSLAPF 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  75 HFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQL-------SENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSI 147
Cdd:CHL00049  234 HQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIfdipfyfSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSI 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499 148 AHLGW-MIAIVKMSPQLSLLNFIIYILmtsslFLLFMNLN-------------TKNITELSSSWFKTPTLISLSLLTLLS 213
Cdd:CHL00049  314 GQIGYvIIGIIVGDSNDGYASMITYML-----FYIFMNLGtfacivlfglrtgTDNIRDYAGLYTKDPFLALSLALCLLS 388

                         250
                  ....*....|...
gi 1933279499 214 LSGLPPLTGFLPK 226
Cdd:CHL00049  389 LGGIPPLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 12-181 1.35e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 60.48  E-value: 1.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  12 HPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWA------INTNMNPTP----MVLLSIAIAMKLGVAPFHFWLPEV 81
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTfdiaelAAAPLPLTAqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  82 LQGSTLQTGLILS---------------------TWQKLAPmslliqlsentnlfLMMTLGLLSTMIGGWGGINQTQLRK 140
Cdd:COG1008   236 HVEAPTAGSVLLAgvllkmggygllrfalplfpeASAYFAP--------------LLAALGVIGIIYGALVALAQTDLKR 301

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1933279499 141 ILAFSSIAHLGWM-IAIVKMSP---QLSLLNFIIYILMTSSLFLL 181
Cdd:COG1008   302 LIAYSSVSHMGFVlLGIFALNPlglQGAVLQMVSHGLITAALFLL 346
PRK12650 PRK12650
DUF4040 family protein;
44-201 4.47e-10

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 59.29  E-value: 4.47e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  44 AGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLS---ENTNLF--LMM 118
Cdd:PRK12650  197 SDVWAEKPGLTTVVAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvfHDVAVWnwLLI 276

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499 119 TLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYI----LMTSSLFLLFMNLN----TKNI 190
Cdd:PRK12650  277 IVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIGVVDhqagTRDI 356

                         170
                  ....*....|.
gi 1933279499 191 TELSSSWFKTP 201
Cdd:PRK12650  357 RRLGSLWRRMP 367
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-229 1.15e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 54.72  E-value: 1.15e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   9 KNPHPRAIEAATKYFLTQAAASALILFSSIM-----NAWLAGEWAINTNMNPTP-----MVLLSIAIAMKLGVAPFHFWL 78
Cdd:PRK08376  164 RNDTWEAIEAGIKYMFVGSLASSMVLLGIALlygqyGTLNMAYLAVKMSENPTVvakiaLALFIAGLAMKSGAVPVHMWL 243

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  79 PEVLQG--STLQTGLILSTWQKLAPMSLLI------QLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHL 150
Cdd:PRK08376  244 PDAYPAapSSISAMLLVIKQAGLYALARVLfsiygpAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQI 323

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499 151 GWM-----IAIVKMSPQLS-----------LLNFIIYILMTSSLFL----LFMNLNTKNITELSSSWFKTPTLISLSLLT 210
Cdd:PRK08376  324 GYMllglgVGLAALGDPAMasygeialaggIYHIVNHALYKALLFLtagaVIYETGTRNLNELGGLARTMPKTTIAFLIG 403

                         250
                  ....*....|....*....
gi 1933279499 211 LLSLSGLPPLTGFLPKWLI 229
Cdd:PRK08376  404 AAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 13-181 1.52e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.56  E-value: 1.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  13 PRAIEAATKYFLTQAAASALILFSSIMNAWLAG------EWaINTNMNPTPMVLLSIAI----AMKLGVAPFHFWLPEV- 81
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllEL-LNLPLPFGVQTWLFLAFfiafAVKVPLFPLHTWLPDAh 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  82 LQGSTLQTGLILSTWQKLAP---MSLLIQLSENTNLF---LMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGW-MI 154
Cdd:TIGR01972 231 VEAPTAGSVILAGVLLKMGTygfLRFNLPLFPDASLYfapVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFvLL 310

                         170       180       190
                  ....*....|....*....|....*....|
gi 1933279499 155 AIVKMSP---QLSLLNFIIYILMTSSLFLL 181
Cdd:TIGR01972 311 GIFSFNElgiSGAVFQMISHGLITAALFLL 340
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-195 5.84e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 52.65  E-value: 5.84e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   3 AFPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAIN--TNMNPTPMVLLSIAIAMKLGVAPFHFWLPE 80
Cdd:PRK07234  130 TFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSglATADPEAFALIALGLLVKGGIFVSGLWLPL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  81 VLQGSTLQTGLILS---TWQKLAPMSLLIQLSENTNLfLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAiv 157
Cdd:PRK07234  210 THSEAEPPVSALLSgvvVKAGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILA-- 286

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1933279499 158 kmSPQLSLLNFIIYILMTSSLFLLFMNLNTKNITELSS 195
Cdd:PRK07234  287 --APLVGGLYALAHGLVKSTLFLCAGALPSRNFTELIS 322
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
18-181 1.81e-07

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 51.24  E-value: 1.81e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  18 AATKYFLTQAAASALILFSSIMNAWLAGewAINTNMNP---------TPMVLLS---IAIAMKLGVAPFHFWLPEV-LQG 84
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSG--ASSFDYEPlrshtlplsTQLLLLApilVGFGIKIPLVPFHTWLPDAhVEA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  85 STLQTGLILSTWQKLAPMSLLiqlSENTNLFL---------MMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIA 155
Cdd:PRK06473  236 STPVSVLLAGVLLKLGTYGLL---RFGVGLFPeawvylapwLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILL 312

                         170       180       190
                  ....*....|....*....|....*....|
gi 1933279499 156 IVKMSPQLSLL----NFIIYILMTSSLFLL 181
Cdd:PRK06473  313 AAAAATPLSILaavfQMISHGLISALLFLL 342
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 59-180 2.78e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 47.66  E-value: 2.78e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  59 VLLSIAIAMKLGVAPFHFWLPE-----------VLQGSTLQTGL--ILSTWQKLAPMSLLiqlseNTnlfLMMTLGLLST 125
Cdd:PRK12665  213 AVLLVAFGIKAAVFPLSFWLPDsyptapapvtaVFAGLLTKVGVyaIIRTHTLLFPGGGL-----DT---LLMVVALLTM 284

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1933279499 126 MIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIY----ILMTSSLFL 180
Cdd:PRK12665  285 VVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYvahhITVQTTLFL 343
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 18-181 5.17e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 46.95  E-value: 5.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  18 AATKYFLTQAAASALILFSSIMNAWLAGEWAINTN---MNPTPMVL-------LSIAIAMKLGVAPFHFWLPEV-----L 82
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTFTFDLAelgAKSYPLALelllyagFLIAFGVKLPIFPLHTWLPDAhgeasA 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  83 QGSTLQTGLILstwqKLAPMSLL---IQLSENTNLFL---MMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMI-- 154
Cdd:PRK12561  218 PVSMILAGVLL----KMGGYALIrfnVQMLPDAHVYFapaLAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLlg 293

                         170       180
                  ....*....|....*....|....*....
gi 1933279499 155 --AIVKMSPQLSLLNFIIYILMTSSLFLL 181
Cdd:PRK12561  294 iaAFTDLGISGAMLQMISHGLIAAALFFL 322
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 13-201 6.83e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 46.68  E-value: 6.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  13 PRAIEAATKYFLTQAAASALILFSSIMNAWLAGEW-------AINTNMNPTPMVLLSIAIAM----KLGVAPFHFWLPEV 81
Cdd:COG1009   158 PSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLnfsellaAAPTILSSPLLTLILLLLLLgafgKSAQFPLHFWLPDA 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  82 LQGSTLQTGLILS-TWQK-----LAPMSLLIQLSENTnLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIA 155
Cdd:COG1009   238 MEGPTPVSALLHAaTMVKagvylLARLSPLFALSPVW-LTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFL 316

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1933279499 156 IVKmspqLSLLNFIIYILMTSSLF--LLFM-------NLNTKNITELSSSWFKTP 201
Cdd:COG1009   317 ALG----VGAYVAALFHLLTHAFFkaLLFLgagsvihATGTRDIRKMGGLRKKMP 367
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 13-201 1.69e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 45.35  E-value: 1.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  13 PRAIEAATKYFLTQAAASAL------ILFSSI-------MNAWLAGEWAINTnMNPTPMVLLSIAIAM---------KLG 70
Cdd:PRK12667  160 GDAVEAAIKYALIGAVGTTLyflalaFLYATFgtlnmadLSAKIRGLSFPLT-GGLAGNPPLALGVALalalwaftiKAA 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  71 VAPFHFWLPEV-----------LQGSTLQTG---------LILSTWQKLAPMSLLIQlsentnlFLMMTLGLLSTMIGGW 130
Cdd:PRK12667  239 IFPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALS-------PILIILGAVSAIIGAL 311

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1933279499 131 GGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYILMTS-SLFLLFMN-------LNTKNITELSSSWFKTP 201
Cdd:PRK12667  312 MMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAiAKSLLFLAsgvfihaAGTRDIDELAGLGRKMP 390
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 13-154 2.62e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.81  E-value: 2.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  13 PRAIEAATKYFLTQAAASALILFSSI----MNAWLAGEWAI----NTNMNPTPMVLL----SIAIAMKLGVAPFHFWLPE 80
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIadllNLPLPPGVQYWLflafFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  81 VLQ-----GSTLQTGLILstwqKLAPMSLL---IQLSENTN---LFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAH 149
Cdd:PRK05846  237 AHVqaptaGSVLLAGILL----KMGAYGLLrfsLPLFPDAShefAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312


                  ....*
gi 1933279499 150 LGWMI 154
Cdd:PRK05846  313 MGFVT 317
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 60-238 1.10e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 42.68  E-value: 1.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  60 LLSIAIAMKLGVAPFHFWLPE-----------VLQGSTLQTG---LILSTWQkLAPMSLLIQLSE--NTNLF--LMMTLG 121
Cdd:PRK08668  201 FLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygFLLVLYV-LPGTKLFSEFGTyrGVPLFnyILAWLG 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499 122 LLSTMIGGWGGINQTQLRKILAFSSIAHLGW-MIAIVKMSP---QLSLLNFIIYILMTSSLFLLFMNL----NTKNITEL 193
Cdd:PRK08668  280 NISIIVGTLMAILQEDIKKLIAYSSVANGGYiLVGLGLGTSlgfAGGLFHVFNHALFKGLFFLIFAAViyrtGTTKISEM 359

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1933279499 194 SSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNL 238
Cdd:PRK08668  360 GGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 54-157 1.22e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.99  E-value: 1.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  54 NPTPMVLLSIAIAM-------KLGVAPFHFWLPEVLQGST-----------LQTGLILSTwqKLAPMslliqLSENTN-L 114
Cdd:PRK12644  195 DPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTpvsaylhaaamVKAGIYLVA--RLAPG-----FADVPVwR 267

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1933279499 115 FLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIV 157
Cdd:PRK12644  268 PTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLV 310
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 31-183 1.59e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 42.25  E-value: 1.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  31 ALILFSSIMNAWLAGEWAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLSE 110
Cdd:MTH00211  180 SMVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSP 259

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499 111 -NTNLFLMMT----LGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWM-IAIVKMSPQLSLLNfiiyiLMTSSLF--LLF 182
Cdd:MTH00211  260 lFQNNQLILGavllLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMmVTLGLNQPQLAFLH-----ICTHAFFkaMLF 334


                  .
gi 1933279499 183 M 183
Cdd:MTH00211  335 M 335
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 59-180 1.59e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 42.25  E-value: 1.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  59 VLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQ---LSENTNLFLMMT--LGLLSTMIGGWGGI 133
Cdd:MTH00032  229 ILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRsfpLFEKAPLTLLIItiFGALTAFFAATVGL 308

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1933279499 134 NQTQLRKILAFSSIAHLGWMIAIVKM--SPQLSLLNFIIYILMTSSLFL 180
Cdd:MTH00032  309 VQNDLKKVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFL 357
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
18-166 2.80e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 41.62  E-value: 2.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  18 AATKYFLTQAAASALILFSSIMNAWLAGE----------WAINTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEV-LQGST 86
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGStsfdydaistQNLSLNTQLILLTGLLLGFGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  87 LQTGLILSTWQKLAPMSLL---IQLSENTNLFLMMTL---GLLSTMIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMS 160
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLLrfgLQLFPQTWSLVAPGLaiiGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317


                  ....*.
gi 1933279499 161 PQLSLL 166
Cdd:PRK07363  318 TQLSLL 323
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 63-193 3.95e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.06  E-value: 3.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  63 IAIAMKLGVAPFHFWLPEV-----LQGSTLQTGLILstwqKLAPMSL------LIQLSENTNLFLMMTLGLLSTMIGGWG 131
Cdd:MTH00226  238 LAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILL----KLGGYGLvrlswpILPLGAQNLAPAVIAMGIVGIVYGSFA 313

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933279499 132 GINQTQLRKILAFSSIAHLGwMIAIVKMSPQLSLLNFIIYILM-----TSSLFLLFMNLNTKNITEL 193
Cdd:MTH00226  314 TCRQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIMLahgivSSLLFILVTILYDRHHTRL 379
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
 56-156 4.17e-04

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 40.99  E-value: 4.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  56 TPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLSE----NTNLFLMMTL-GLLSTMIGGW 130
Cdd:TIGR00940 207 TAMVLVLLGAFTKSAQFPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLLARFTPvfagTEAWFWIVGLaGLITLLWGSY 286

                          90       100
                  ....*....|....*....|....*.
gi 1933279499 131 GGINQTQLRKILAFSSIAHLGWMIAI 156
Cdd:TIGR00940 287 FAIFQQDLKGILAFSTISQLGLIMVL 312
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 63-151 5.72e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 40.42  E-value: 5.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  63 IAIAMKLGVAPFHFWLPEV-----LQGSTLQTGLILstwqKLAPMSLL----IQLSENTNLF--LMMTLGLLSTMIGGWG 131
Cdd:MTH00217  214 LSLAIKIPKIPFHIWLPQAhveapVAGSVILAGVLL----KLGGYGFIrfswPLLPEASEYFspLIQTLSLLAIIYGSLT 289

                          90       100
                  ....*....|....*....|
gi 1933279499 132 GINQTQLRKILAFSSIAHLG 151
Cdd:MTH00217  290 TCRQVDLKRIIAYSSVAHMG 309
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 50-240 7.77e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 40.40  E-value: 7.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  50 NTNMNPTPMVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLM-----MTLGLLS 124
Cdd:MTH00209  170 NSNLGSVISVLIVLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFFPSLFSSPFfsmslLLLGSLT 249

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499 125 TMIGGWGGINQTQLRKILAFSSIAHLGWM-IAIVKMSPQLSLLNFIIYILMTSSLFL-----LFMNLNTKNITELSSSWF 198
Cdd:MTH00209  250 TLMASMSANVESDLKKIIALSTLSQLGLMmCSLGLNQPELAFFHLITHALFKALLFIcagniIHSHGHSQDIRMVGNLWY 329

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1933279499 199 KTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQNLNM 240
Cdd:MTH00209  330 QMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPI 371
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 46-201 8.17e-04

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 40.28  E-value: 8.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  46 EWAINTNMNPTPMVLLSIA-IAMKLGVA---PFHFWLPEVLQG----STLQTGLILSTWQ----KLAPmslLIQLSENTn 113
Cdd:PRK07390  208 AWAATANLDPLTATLLGLAlIAGPTGKCaqfPLHLWLDEAMEGpnpaSILRNSVVVATGAwvliKLQP---VLALSPVA- 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499 114 LFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHLGWM-IAIVKMSPQLSLLNFIIYILmtsSLFLLFM-------NL 185
Cdd:PRK07390  284 LTVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVfIAVGLQQPDIALLLLLTHAI---AKALLFMsvgsiilTT 360

                         170
                  ....*....|....*.
gi 1933279499 186 NTKNITELSSSWFKTP 201
Cdd:PRK07390  361 ITQDLTELGGLWSRMP 376
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 58-237 9.12e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 40.10  E-value: 9.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  58 MVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLSEN---TNLFL--------MMTLGLLSTM 126
Cdd:PRK12662  212 VLFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDvfkANFVFttlpfnnvFMILAALAIV 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499 127 IGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYI----LMTSSLFL----LFMNLNTKNITELSSSWF 198
Cdd:PRK12662  292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMvsgsISYHFGTTKLEDCLNLWK 371

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1933279499 199 KTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQN 237
Cdd:PRK12662  372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSN 410
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 12-153 2.24e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 38.76  E-value: 2.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  12 HPRAIEAATKYFLTQAAASALILFSSI---MNA-------WLAGEW----AINTNMNPTPM----VLLSIAIAMKLGVAP 73
Cdd:PRK06458  153 TRASLEAAWKYIIICSVGVAFALFGTIlvyANAatvmgdgEMAILWtellKHASLLDPTLMklafVFLLIGFGTKVGLFP 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  74 FHFWLPE-----------VLQGSTLQTGL-ILSTWQKLAPMSLLIQLSENtnlfLMMTLGLLSTMIGGWGGINQTQLRKI 141
Cdd:PRK06458  233 MHAWLPDahseapspvsaLLSGVLLNVALyAVLRYYILIDAAIGSDFPGR----LLLIFGLLSVLVAAFFLLRQRDIKRL 308

                         170
                  ....*....|..
gi 1933279499 142 LAFSSIAHLGWM 153
Cdd:PRK06458  309 FAYSSIEHMGLI 320
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 67-189 3.48e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 37.93  E-value: 3.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  67 MKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLSENTNLFLMMtLGLLSTMIGGWggiNQTQLRKILAFSS 146
Cdd:MTH00091   69 MKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLL-FGLLICFFQMF---LLKSYKNLLILSS 144

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1933279499 147 IAHLGWMIaivkMSPQLSLLN-FIIYILMTSSLFLLFMNLNTKN 189
Cdd:MTH00091  145 TESFNWLI----LSFFFSFFNvFFLFFYYFLLMLFLIPKFNNVN 184
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 59-176 5.33e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 37.43  E-value: 5.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  59 VLLSIAIAMKLGVAPFHFWLPE-----------VLQGSTLQTGLIlstwqKLAPMSLLIQLSENTNLF--LMMTLGLLST 125
Cdd:PRK08676  210 LFIFIGFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGIY-----GILRLSALLRQSGAAEQFsnVLIGLGIFSI 284

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1933279499 126 MIGGWGGINQTQLRKILAFSSIAHLGWMIAIVKMSPQLSLLNFIIYILMTS 176
Cdd:PRK08676  285 AVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHS 335
PRK12646 PRK12646
DUF4040 family protein;
58-237 6.01e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 37.43  E-value: 6.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  58 MVLLSIAIAMKLGVAPFHFWLPEVLQGSTLQTGLILSTWQKLAPMSLLIQLS-----ENTNLFLMMTLGLLSTMIGGWGG 132
Cdd:PRK12646  213 IFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTpllglSNMYIYIVTFVGLITMLFGSITA 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499 133 INQTQLRKILAFSSIAHLGWMIAIVKM------SPQLSLLNFIIYIL-------MTSSLF--LLFMNLN-------TKNI 190
Cdd:PRK12646  293 LKQWDLKGILAYSTISQLGMIMAMVGIgggyaqHQQDAIASIYVFVLfaalfhlMNHAIFkcALFMGVGiidheagTRDI 372

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1933279499 191 TELSSSWFKTPTLISLSLLTLLSLSGLPPLTGFLPKWLIAQELVKQN 237
Cdd:PRK12646  373 RILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQTG 419
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 2-151 6.90e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 37.40  E-value: 6.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499   2 SAFPLMTKNPHPRAIEAATKYFLTQAAASALILFSSIMNAWLAGEWAINTNMNPT-----PMVLLSIAIAMKLGVAPFHF 76
Cdd:PRK08667  147 SFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHK 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933279499  77 WLPEVLQG-----STLQTGLILST-WQKLAPMSLLIQLSENTNLFLMMTLGLLSTMIGGWGGINQTQLRKILAFSSIAHL 150
Cdd:PRK08667  227 WLPYAHPAspsnvSALMSGVMLKVaVYGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENI 306


                  .
gi 1933279499 151 G 151
Cdd:PRK08667  307 G 307
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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