|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-335 |
2.50e-74 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 232.41 E-value: 2.50e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 1 MKKMPIKMLFSTILITSTIISITSHSWLGMWMGLEINLLAFIPLISQDKPNPFYLSSIKYFIIQAIASITLIMTFITTLT 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 81 KMFNHNEMLLMTMSMSFLLKIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSALQYLqTNQSIMMTFILTSAITGAI 160
Cdd:MTH00160 81 NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL-INNNFIIIIIILSAIIGAI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 161 MGLNQMSLRKLMAYSSINHIAWMLAAMQSNLVIWMQYILLYSTLTIIISLMFKSHNIFMMNELFMSNKNLMMSKLTLMMS 240
Cdd:MTH00160 160 GGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 241 VLSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMKMFMSSGMYSFMESKWNTNKIYLTKMeMITLFM 320
Cdd:MTH00160 240 LLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFS-LILNFL 318
|
330
....*....|....*
gi 1938966128 321 NSLSLLGLTISPVFM 335
Cdd:MTH00160 319 SFISLFGLILSSLLF 333
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
27-279 |
3.34e-21 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 91.61 E-value: 3.34e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 27 WLGMWMGLEINLLAFIPLISQDKPNPFYLS-SIKYFIIQAIASITLIMTFI---------------TTLTKMFNHNEMLL 90
Cdd:pfam00361 4 LLLMYLGWEAVLLPSYLLIGYWGKSPRSSEaGMKYFLLTLLGSSILLFGISlmynytgtlsfdelsKALTGGLNSSGLLL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 91 MT--MSMSFLLKIGAAPLHFWLPEVMENLSWDNCIII-MTWQKIAPMSALQ-------YLQTNQSIMMTFILTSAITGAI 160
Cdd:pfam00361 84 LFllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRrsllylpSSPFIQQILLILAIISMLLGSL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 161 MGLNQMSLRKLMAYSSINHIAWMLAAMQSNLVI----WMQYILLYSTLTI--------IISLMFKSHNIFMMNELFMSNK 228
Cdd:pfam00361 164 AALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAglflcagsVIYRRVHTRNIRDYGGLAKTMP 243
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1938966128 229 NLmmsKLTLMMSVLSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSS 279
Cdd:pfam00361 244 IL---ALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
32-291 |
7.55e-16 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 77.85 E-value: 7.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 32 MGLEINLLAFIPLISQDKPNPFYL-SSIKYFIIQAIASITLI--MTFI------TTLTKMF-----NHNEMLLMTMSMSF 97
Cdd:COG1007 129 LGLELLSLSLYVLVAFRRDDRRSSeAALKYFLLGALSSGFLLygISLLygatgsLNLAGIAaalaaGGANSPLLLLGLVL 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 98 LL-----KIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSAL---------QYLQTNQSIMMTFILTSAITGAIMGL 163
Cdd:COG1007 209 VLaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGLAADWQLLLAVLAVLSMTVGNLAAL 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 164 NQMSLRKLMAYSSINHIAWMLAAMQSNLVIWMQ----YILLYSTLTI----IISLM----FKSHNIFMMNELFMSNKNLM 231
Cdd:COG1007 289 AQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSaalfYLLAYLFMNLgafaVILLLsrkgGEAEEIEDLAGLARRSPLLA 368
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1938966128 232 mskLTLMMSVLSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMK----MFM 291
Cdd:COG1007 369 ---LAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRvvkaMYF 429
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
28-335 |
1.74e-14 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 73.83 E-value: 1.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 28 LGMWMGLEINLLAFIPLISQDKPNPFYL-SSIKYFIIQAIAS------ITLIMTFITTL----------TKMFNHNEMLL 90
Cdd:TIGR01770 125 LSIYLGLELQSLCFYVLAGLKRKSRFSTeAGLKYFILGAFSSglllfgISLIYGFTGSLnfedlllflsNGMLNISLLLL 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 91 MTMSM--SFLLKIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSAL---------QYLQTNQSIMMTFILTSAITGA 159
Cdd:TIGR01770 205 GIVLIlvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyilfGFSEAWQIFLAIIAFLSMLIGN 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 160 IMGLNQMSLRKLMAYSSINHIAWMLAA--------MQSNLVIWMQYILLYSTLTIIISLMFKS-----HNIFMMNELFMS 226
Cdd:TIGR01770 285 FGALAQKKVKRLLAYSSISHVGYILIGllagtlegIKAVLFYIFIYALMSLGAFGVLSLLRSYkdewiEYISDFAGLFKT 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 227 NKNLMMSKLTLMmsvLSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMKMFMSsgMYSFMESKWNTN 306
Cdd:TIGR01770 365 NPILAILILIFM---FSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKV--MYFDKPERRIPS 439
|
330 340
....*....|....*....|....*....
gi 1938966128 307 KIYlTKMEMITLFMNSLSLLGLTISPVFM 335
Cdd:TIGR01770 440 NPQ-SKAQSLLLSISALFILFLGLFPSLI 467
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-335 |
2.50e-74 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 232.41 E-value: 2.50e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 1 MKKMPIKMLFSTILITSTIISITSHSWLGMWMGLEINLLAFIPLISQDKPNPFYLSSIKYFIIQAIASITLIMTFITTLT 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 81 KMFNHNEMLLMTMSMSFLLKIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSALQYLqTNQSIMMTFILTSAITGAI 160
Cdd:MTH00160 81 NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL-INNNFIIIIIILSAIIGAI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 161 MGLNQMSLRKLMAYSSINHIAWMLAAMQSNLVIWMQYILLYSTLTIIISLMFKSHNIFMMNELFMSNKNLMMSKLTLMMS 240
Cdd:MTH00160 160 GGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 241 VLSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMKMFMSSGMYSFMESKWNTNKIYLTKMeMITLFM 320
Cdd:MTH00160 240 LLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFS-LILNFL 318
|
330
....*....|....*
gi 1938966128 321 NSLSLLGLTISPVFM 335
Cdd:MTH00160 319 SFISLFGLILSSLLF 333
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
27-289 |
2.38e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 170.76 E-value: 2.38e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 27 WLGMWMGLEINLLAFIPLISQDKPNPFYLSSIKYFIIQAIASITLIMTFITT--LTKMFNHNEM---LLMTMSMSFL-LK 100
Cdd:MTH00135 26 WLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNawLTGQWDIQQMshpLPTTMITLALaLK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 101 IGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSAL-QYLQTNQSIMMTFILTSAITGAIMGLNQMSLRKLMAYSSINH 179
Cdd:MTH00135 106 IGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALIlQIAPTNPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAH 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 180 IAWMLAAMQSNLVIWMQYILLYSTLTIIISLMFKSHNIFMMNELFMS-NKNLMMSKLTlMMSVLSMGGLPPLLGFLPKWL 258
Cdd:MTH00135 186 LGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSwTKAPALTALT-PLILLSLGGLPPLTGFMPKWL 264
|
250 260 270
....*....|....*....|....*....|.
gi 1938966128 259 VIQELLVNSLFITMVTLIMSSTITLYFYMKM 289
Cdd:MTH00135 265 ILQELTKQDLPLTATLAALSALLSLYFYLRL 295
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
27-335 |
6.24e-49 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 166.92 E-value: 6.24e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 27 WLGMWMGLEINLLAFIPLISQDKPNPFYLSSIKYFIIQAIASITLIMTFITT--------LTKMFNHNEMLLMTMSMSfl 98
Cdd:MTH00112 26 WLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNawntgqwdITQLTNPTSCTLLTLALA-- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 99 LKIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSAL--QYLQTNQSIMMTFILTSAITGAIMGLNQMSLRKLMAYSS 176
Cdd:MTH00112 104 MKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLlmTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSS 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 177 INHIAWMLAAMQSNLVIWMQYILLYSTLTIIISLMFKSHNIFMMNELFMSNKNLMMSKLTLMMSVLSMGGLPPLLGFLPK 256
Cdd:MTH00112 184 IAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPK 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 257 WLVIQELLVNSLFITMVTLIMSSTITLYFYMKMFMSSGMY-----SFMESKWNTNKIYLTKMEMITlfmnSLSLLGLTIS 331
Cdd:MTH00112 264 WLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITlppntTNMMMKWRTKPKKNTLTATLT----TLSTLLLPLS 339
|
....
gi 1938966128 332 PVFM 335
Cdd:MTH00112 340 PMIL 343
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
27-335 |
1.35e-47 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 163.48 E-value: 1.35e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 27 WLGMWMGLEINLLAFIPLISQDKPNPFYLSSIKYFIIQAIASITLIMTFIT--------TLTKMFNHNEMLLMTMSMSfl 98
Cdd:MTH00105 26 WLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIInlmysgqwTITKLTNPTASTLMTIALA-- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 99 LKIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSALQ--YLQTNQSIMMTFILTSAITGAIMGLNQMSLRKLMAYSS 176
Cdd:MTH00105 104 MKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYqiSPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSS 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 177 INHIAWMLAAMQSNLVIWMQYILLYSTLTIIISLMFKSHNIFMMNEL-FMSNKNLMMSKLTLMMsVLSMGGLPPLLGFLP 255
Cdd:MTH00105 184 IAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLsHTWNKTPLMTSLILLT-LLSLGGLPPLTGFMP 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 256 KWLVIQELLVNSLFITMVTLIMSSTITLYFYMKMFMSSGMYSFMESKWNTNKIYLTKMEMITLF--MNSLSLLGLTISPV 333
Cdd:MTH00105 263 KWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTKPMTLLptLIILSTMLLPLTPM 342
|
..
gi 1938966128 334 FM 335
Cdd:MTH00105 343 LS 344
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
2-320 |
7.32e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 155.81 E-value: 7.32e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 2 KKMPIKMLFSTILITSTIISITSHSWLGMWMGLEINLLAFIPLISQDKPNPFYLSSIKYFIIQAIASITLIMTFITTLTK 81
Cdd:MTH00144 1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 82 MFNHNEMLLMTMSMSflLKIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSALQYLQTNQSIMMTFILT---SAITG 158
Cdd:MTH00144 81 SFSWFSMSLLLLGLC--LKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVIsvlSALVG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 159 AIMGLNQMSLRKLMAYSSINHIAWMLAAMQSNLVIWMQYILLYSTLTIIISLMFKSHNIFMMNELFMSNKNlMMSKLTLM 238
Cdd:MTH00144 159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPS-YKTGLSII 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 239 MSVLSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMKMFMSSGMYSFMESKWNTNKIYLTKMEMITL 318
Cdd:MTH00144 238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSIISLNL 317
|
..
gi 1938966128 319 FM 320
Cdd:MTH00144 318 LG 319
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
27-335 |
4.92e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 151.61 E-value: 4.92e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 27 WLGMWMGLEINLLAFIPLISQDKPNPFYLSSIKYFIIQAIASITLIMTFITTL------TKMFNHNEMLLMTMSMSFLLK 100
Cdd:MTH00070 26 WFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAwftgewTIMNMQTPLPTIMLTIALMMK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 101 IGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSALQYL--QTNQSIMMTFILTSAITGAIMGLNQMSLRKLMAYSSIN 178
Cdd:MTH00070 106 LGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQIshLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIA 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 179 HIAWMLAAMQSNLVIWMQYILLYSTLTIIISLMFKSHNIFMMNELFMS-NKNLMMSKLTlMMSVLSMGGLPPLLGFLPKW 257
Cdd:MTH00070 186 HLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSwSKNPTLTSMM-MLTLLSLGGLPPTTGFIPKW 264
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1938966128 258 LVIQELLVNSLFITMVTLIMSSTITLYFYMKM-FMSSGMYSFMESKWNTNKIYLTKMEMITLFMNSLSLLGLTISPVFM 335
Cdd:MTH00070 265 LILQELTKQNLTTLATLMALSALLSLFFYLRLsYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTIILSLMLLPITPTIL 343
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
27-334 |
7.48e-43 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 151.24 E-value: 7.48e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 27 WLGMWMGLEINLLAFIPLISQDKPNPFYLSSIKYFIIQAIASITLIMT------FITTLTKMFNHNEMLLMTMSMSFLLK 100
Cdd:MTH00041 26 WFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGaliqawLSGSWSINGPLNTLSSIIITLALALK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 101 IGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSALQYL--QTNQSIMMTFILTSAITGAIMGLNQMSLRKLMAYSSIN 178
Cdd:MTH00041 106 LGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISIsnLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIA 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 179 HIAWMLAAMQSNLVIWMQYILLYSTLTIIISLMFKSHNIFMMNELFMSNKNLMMSKLTLMMSVLSMGGLPPLLGFLPKWL 258
Cdd:MTH00041 186 HLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 259 VIQELLVNSLFITMVTLIMSSTITLYFYMKMFMSSGMYSFMESKWNTNKIYLTKMEMITLFMNSL----SLLGLTISPVF 334
Cdd:MTH00041 266 SLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSIlssiSILGLLLIPLF 345
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
6-328 |
5.03e-42 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 148.96 E-value: 5.03e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 6 IKMLFSTILITSTIISITSHSWLGMWMGLEINLLAFIPLISQDKPNPFYLSSIKYFIIQAIASITLIMTFITTL--TKMF 83
Cdd:MTH00200 5 ILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAwtSGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 84 NHNEMLLMTM----SMSFLLKIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSALQYL--QTNQSIMMTFILTSAIT 157
Cdd:MTH00200 85 GISEMLGPLSetliLLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLapALNSNILLLLGLLSVLV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 158 GAIMGLNQMSLRKLMAYSSINHIAWMLAAMQSNLVIWMQYILLYSTLTIIISLMFKSHNIFMMNELFMSNKNLMMSKLTL 237
Cdd:MTH00200 165 GGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 238 MMSVLSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMKmfMSSGMYSFMESKWNTNKIYLTKMEMIT 317
Cdd:MTH00200 245 GLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLR--LSYLTLLTLSPNQINMMSSWRTKSNSN 322
|
330
....*....|.
gi 1938966128 318 LFMNSLSLLGL 328
Cdd:MTH00200 323 LLVGLLLLLSI 333
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-329 |
9.18e-40 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 142.50 E-value: 9.18e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 8 MLFSTILITSTIISITSHSWLGMWMGLEINLLAFIPLISQDKPNPFYLSSIKYFIIQAIASITLIMTFITTLTKMFNHNE 87
Cdd:MTH00197 1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 88 MLLMTMSmSFLLKIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSALQYLQTNQSIMMTFILTSAITGAIMGLNQMS 167
Cdd:MTH00197 81 SVVLVIL-GLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 168 LRKLMAYSSINHIAWMLAAMQSNLVIWMQYILLYSTLTIIISLMFKSHNIFMMNELFMSNKNLMMSKLTLMMSVLSMGGL 247
Cdd:MTH00197 160 IRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 248 PPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMKMFMSSGMYSFMESKWNTNKIYLTKMEMITLFMNSLSLLG 327
Cdd:MTH00197 240 PPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPLLMI 319
|
..
gi 1938966128 328 LT 329
Cdd:MTH00197 320 FT 321
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-326 |
6.00e-38 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 137.99 E-value: 6.00e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 1 MKKMPIKMLFSTILITSTIISITSHSWLGMWMGLEINLLAFIPLISQDKPNPFYLSSIKYFIIQAIASITLIMTFITTLT 80
Cdd:MTH00011 2 MSTFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 81 KMFNHNEMLLMTMSMSFLLKIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSALQYL--QTNQSIMMTFILTSAITG 158
Cdd:MTH00011 82 FPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtsHNILPMMTSMAAMSALAG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 159 AIMGLNQMSLRKLMAYSSINHIAWMLAAMQSNLVIWMQYILLYSTLTIIISLMFKSHNIFMMNELFMSNKNLMMSKLTLM 238
Cdd:MTH00011 162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 239 MSVLSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMKMFMSSGMYSFMESKWNTNKIYLTKMEMITL 318
Cdd:MTH00011 242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKILISM 321
|
....*...
gi 1938966128 319 FMNSLSLL 326
Cdd:MTH00011 322 CTLSLGLI 329
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
27-279 |
3.34e-21 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 91.61 E-value: 3.34e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 27 WLGMWMGLEINLLAFIPLISQDKPNPFYLS-SIKYFIIQAIASITLIMTFI---------------TTLTKMFNHNEMLL 90
Cdd:pfam00361 4 LLLMYLGWEAVLLPSYLLIGYWGKSPRSSEaGMKYFLLTLLGSSILLFGISlmynytgtlsfdelsKALTGGLNSSGLLL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 91 MT--MSMSFLLKIGAAPLHFWLPEVMENLSWDNCIII-MTWQKIAPMSALQ-------YLQTNQSIMMTFILTSAITGAI 160
Cdd:pfam00361 84 LFllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRrsllylpSSPFIQQILLILAIISMLLGSL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 161 MGLNQMSLRKLMAYSSINHIAWMLAAMQSNLVI----WMQYILLYSTLTI--------IISLMFKSHNIFMMNELFMSNK 228
Cdd:pfam00361 164 AALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAglflcagsVIYRRVHTRNIRDYGGLAKTMP 243
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1938966128 229 NLmmsKLTLMMSVLSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSS 279
Cdd:pfam00361 244 IL---ALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
27-289 |
7.45e-20 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 88.93 E-value: 7.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 27 WLGMWMGLEINLLAFIPLISQDKPNPFYL-SSIKYFIIQAIAS----ITLIMTFITTLTKMFNHNEMLL----------- 90
Cdd:MTH00196 15 WLSVYLAIELQTLSLFILIAQNRGSGYSAeAGLKYFVLGALSSglflFGCALLCGTTGGLHLSYINLVLnsgqsfssvsv 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 91 ----MTMSMSFLLKIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSALQYLQTNQSIMMTFILTSAITGAIMGLNQM 166
Cdd:MTH00196 95 pigyLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSLFVGAIGALNQT 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 167 SLRKLMAYSSINHIAWMLAAMQSNLVIWMQYILLYSTLTIIISL------MFKSHNIFMMNELFMSNKNLMMSKLTLMMS 240
Cdd:MTH00196 175 KIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMSIcvfsiiLALNVYKNLIIEFSGLSRRLPILAITLALT 254
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1938966128 241 VLSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMKM 289
Cdd:MTH00196 255 FLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
32-291 |
7.55e-16 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 77.85 E-value: 7.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 32 MGLEINLLAFIPLISQDKPNPFYL-SSIKYFIIQAIASITLI--MTFI------TTLTKMF-----NHNEMLLMTMSMSF 97
Cdd:COG1007 129 LGLELLSLSLYVLVAFRRDDRRSSeAALKYFLLGALSSGFLLygISLLygatgsLNLAGIAaalaaGGANSPLLLLGLVL 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 98 LL-----KIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSAL---------QYLQTNQSIMMTFILTSAITGAIMGL 163
Cdd:COG1007 209 VLaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGLAADWQLLLAVLAVLSMTVGNLAAL 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 164 NQMSLRKLMAYSSINHIAWMLAAMQSNLVIWMQ----YILLYSTLTI----IISLM----FKSHNIFMMNELFMSNKNLM 231
Cdd:COG1007 289 AQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSaalfYLLAYLFMNLgafaVILLLsrkgGEAEEIEDLAGLARRSPLLA 368
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1938966128 232 mskLTLMMSVLSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMK----MFM 291
Cdd:COG1007 369 ---LAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRvvkaMYF 429
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
94-289 |
6.02e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 75.44 E-value: 6.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 94 SMSFLLKIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSALQYLQTNQSIMMTFILTSAITGAIMGLNQMSLRKLMA 173
Cdd:MTH00199 197 TISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGALNQTKIKRLLA 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 174 YSSINHIAWMLAAMQ----SNLVIWMQYILLYSTLTI---IISLMFKSHNIFMMNELFMSNKNLMMSkLTLMMSVLSMGG 246
Cdd:MTH00199 277 YSGIGHMGFILFGVAigsfESIQASLIYMIIYVIMSIcsfSIILSLKLTKGLIVEVSGLSRKNPVIA-LTLALTFLSIAG 355
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1938966128 247 LPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMKM 289
Cdd:MTH00199 356 IPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
28-335 |
1.74e-14 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 73.83 E-value: 1.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 28 LGMWMGLEINLLAFIPLISQDKPNPFYL-SSIKYFIIQAIAS------ITLIMTFITTL----------TKMFNHNEMLL 90
Cdd:TIGR01770 125 LSIYLGLELQSLCFYVLAGLKRKSRFSTeAGLKYFILGAFSSglllfgISLIYGFTGSLnfedlllflsNGMLNISLLLL 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 91 MTMSM--SFLLKIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSAL---------QYLQTNQSIMMTFILTSAITGA 159
Cdd:TIGR01770 205 GIVLIlvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyilfGFSEAWQIFLAIIAFLSMLIGN 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 160 IMGLNQMSLRKLMAYSSINHIAWMLAA--------MQSNLVIWMQYILLYSTLTIIISLMFKS-----HNIFMMNELFMS 226
Cdd:TIGR01770 285 FGALAQKKVKRLLAYSSISHVGYILIGllagtlegIKAVLFYIFIYALMSLGAFGVLSLLRSYkdewiEYISDFAGLFKT 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 227 NKNLMMSKLTLMmsvLSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMKMFMSsgMYSFMESKWNTN 306
Cdd:TIGR01770 365 NPILAILILIFM---FSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKV--MYFDKPERRIPS 439
|
330 340
....*....|....*....|....*....
gi 1938966128 307 KIYlTKMEMITLFMNSLSLLGLTISPVFM 335
Cdd:TIGR01770 440 NPQ-SKAQSLLLSISALFILFLGLFPSLI 467
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
56-288 |
6.96e-14 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 72.16 E-value: 6.96e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 56 SSIKYFIIQAIASITLI--MTFI------TTLTKMFN------HNEMLLMT----MSMSFLLKIGAAPLHFWLPEVMENL 117
Cdd:PRK05777 155 AAIKYFVLGALASGFLLygMSLLygatgsLSFAGIAKaladgsGNSLLLLFglvfLLVGLAFKLSAVPFHMWTPDVYEGA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 118 SWDNCIIIMTWQKIAPMSAL---------QYLQTNQSIMMTFILTSAITGAIMGLNQMSLRKLMAYSSINHIAWMLAAMQ 188
Cdd:PRK05777 235 PTPVTAFLATAPKIAAFAVLlrllvvafgGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLA 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 189 SNLVIWMQ----YILLYSTLTI----IISLM----FKSHNIFMMNELFMSNKnLMMSKLTLMMsvLSMGGLPPLLGFLPK 256
Cdd:PRK05777 315 AGTAEGYSavlfYLLAYLFMTLgafgVISLLrrkgGEAESISDFAGLSKRSP-LLAAVMTIFM--LSLAGIPPTAGFWGK 391
|
250 260 270
....*....|....*....|....*....|..
gi 1938966128 257 WLVIQELLVNSLFITMVTLIMSSTITLYFYMK 288
Cdd:PRK05777 392 FYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLR 423
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
30-291 |
3.30e-12 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 66.71 E-value: 3.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 30 MWMGLEINLLAFIPLISQDKPNPFYLSSIKYFIIQAIASI--------------TLIMTFITTLTKMFNHNEMLL--MTM 93
Cdd:COG0651 132 LFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSAlfllgvgllygatgTLNMADLAARLAELDPGLLLAafALL 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 94 SMSFLLKIGAAPLHFWLPE---------------VMENLSwdncI--IIMTWQKIAPMSALQYLQTnqsIMMTFILTSAI 156
Cdd:COG0651 212 LVGFGIKAALFPLHFWLPDaypaapspvsallsgLLTKVG----VyaILRVLTLLFGADPALFLGT---LLLVLGLLTML 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 157 TGAIMGLNQMSLRKLMAYSSINHIAWMLAAmqsnlviwmqyILLYSTLTIIISLMFKSHNIFMMNELFMSNKNLM----- 231
Cdd:COG0651 285 VGALGALAQRDLKRLLAYSSVSQIGYILLG-----------LGLGTPLGLAGALFHLLNHALAKALLFLAAGAIEratgt 353
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1938966128 232 ------------MSKLTLMMSV--LSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMKMFM 291
Cdd:COG0651 354 rdldklgglgkrMPLTAAAFLIgaLALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFG 427
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
93-290 |
8.10e-11 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 62.95 E-value: 8.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 93 MSMSFLLKIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSALQYLQTNQSIMMTFILTSAITGAIMGLNQMSLRKLM 172
Cdd:MTH00198 305 ITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLL 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 173 AYSSINHIAWMLAAMQSNLVIWMQ----YILLY-----STLTIIISL---------------MFKSHN-IFMMNELFMSN 227
Cdd:MTH00198 385 AYSGIGHIGFILIGVSAGTYESLQaswtYAVTYlvsalASFTVICTLeefgtrtptsrqrdgSFGNYNlVRRLVDLTILS 464
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1938966128 228 KNLMMSKLTLMMSVLSMGGLPPLLGFLPKWLViqelLVNSLFITmvtliMSSTITLYFYMKMF 290
Cdd:MTH00198 465 RGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFI----LVGSIKIA-----FSSSLSIYYLVALF 518
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
34-287 |
3.88e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 48.34 E-value: 3.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 34 LEINLLAFIPLISQDKPNPFYLSSIKYFIIQAIAS----ITLIMTFITT-------LTKMFNHNEMLLMTMSMSFL---L 99
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGStfllIGVGLLYGVTgtlnmadLAGALAENPTVVTAFGFVLLalaL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 100 KIGAAPLHFWLPEVMENLS-WDNCIIIMTWQKIA-----------PMSALQYLQTNQSIMMTFILTSAITGAIMGLNQMS 167
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPpVVTALLSGLVTKVAvyaliriyftvFGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDD 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 168 LRKLMAYSSINHIAWMLAAmqsnlviwmqyILLYSTLTIIISLMFKSHNIFMMNELFMS---------NKNL-----MMS 233
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLG-----------LALLTPLALAAGLLHLLHHALMKGALFLAagaievtygTRRLselsgLGR 363
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1938966128 234 KLTLMMSV-----LSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLyFYM 287
Cdd:PRK08375 364 RMPLTAAAfavasLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLAL-LYF 421
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
105-256 |
5.70e-06 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 48.12 E-value: 5.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 105 PLHFWLPEVMenlswdnciiimtwQKIAPMSALQ----------YLQTNQSIMMTFI-----------LTSAITGAIMGL 163
Cdd:PRK12650 226 PFHFWLPEAM--------------AAITPVSAFLhaaavvkagiYLLLRFSPVFHDVavwnwlliivgMITALMGAVFAV 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 164 NQMSLRKLMAYSSINHIAWMLA--------AMQSNLVIWMQYILLYSTLTIIISLMFKSHNIFMMNELFMSNKNLMMSKL 235
Cdd:PRK12650 292 QKTDLKKLTAYSTVSQLGWIVAtigvgtpfALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRMPFTFV 371
|
170 180
....*....|....*....|.
gi 1938966128 236 TLMMSVLSMGGLPPLLGFLPK 256
Cdd:PRK12650 372 SVTIAALSMAAVPPLFGFVSK 392
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
56-295 |
4.86e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 45.09 E-value: 4.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 56 SSIKYFIIQAIASItLIMTFITTLTKMFNHNEMLLMTMSMS-----------------FLLKIGAAPLHFWLPEVM-ENL 117
Cdd:PRK08376 173 AGIKYMFVGSLASS-MVLLGIALLYGQYGTLNMAYLAVKMSenptvvakialalfiagLAMKSGAVPVHMWLPDAYpAAP 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 118 SWDNCIIIMTwqKIAPMSALQY-----------LQTNQSIMMTFILTSAITGAIMGLNQMSLRKLMAYSSINHIAWML-- 184
Cdd:PRK08376 252 SSISAMLLVI--KQAGLYALARvlfsiygpainLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlg 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 185 ------------------AAMQSNLVIWMQYILLYSTLTIIISLMFKSHNIFMMNELFMSNKNLMMSKLTLMMSVLSMGG 246
Cdd:PRK08376 330 lgvglaalgdpamasygeIALAGGIYHIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVG 409
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1938966128 247 LPPLLGFLPKWLVIQELLVNSLFITMVTLImSSTITLYFYMKMFMSSGM 295
Cdd:PRK08376 410 LPPFNGFASKWLIYESSALFNPILGVIAMI-GSVLTLASFVKVFHTAFF 457
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
100-305 |
3.26e-04 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 42.35 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 100 KIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMS-ALQYLQTNQSIMMT---FILT-----SAITGAIMGLNQMSLRK 170
Cdd:PRK02504 223 KISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFAlAIRLLVTAFPSFDEqwkLLFTalailSMVLGNVVALAQTSMKR 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 171 LMAYSSINHIAWML-----------AAMQSNLVIWMQYILLYSTLTIIISLMFKSHNIFMMNELFMSNKNLMmskLTLMM 239
Cdd:PRK02504 303 MLAYSSIGQAGFVMiglvagteagyASMVFYLLAYLFMNLGAFACVILFSLRTGTDQISDYAGLYQKDPLLT---LGLSL 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 240 SVLSMGGLPPLLGFLPK-------WLVIQELLVnslFITMVTlimsSTITLYFYM---KMF-------MSSGMYSFMESK 302
Cdd:PRK02504 380 CLLSLGGIPPLAGFFGKiylfwagWQAGLYLLV---LVGLVT----SVISIYYYIrviKMMvvkepqeMSDVVKNYPEIN 452
|
...
gi 1938966128 303 WNT 305
Cdd:PRK02504 453 WNL 455
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
97-290 |
8.35e-04 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 40.91 E-value: 8.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 97 FLLKIGAA------PLHFWLPEVMEnlswdnciiimtwqkiAPM--SAL---------------------QYLQTNQSIM 147
Cdd:COG1009 215 LLLLLGAFgksaqfPLHFWLPDAME----------------GPTpvSALlhaatmvkagvyllarlsplfALSPVWLTVV 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 148 MTFILTSAITGAIMGLNQMSLRKLMAYSSINHIAWMLAAM-QSNLVIWMQYILLYSTltiiislmFKShNIFM------- 219
Cdd:COG1009 279 AIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALgVGAYVAALFHLLTHAF--------FKA-LLFLgagsvih 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 220 -MNELFMSNKNLMMSKL-----TLMMSVLSMGGLPPLLGFLPKWLVIQELLVNS------LFITMVTLIMSSTITLYFYM 287
Cdd:COG1009 350 aTGTRDIRKMGGLRKKMpitaiTFLIGALSLAGIPPFAGFFSKEAILEAALEAGglgpllLAVALLGAFLTAFYSFRLFF 429
|
...
gi 1938966128 288 KMF 290
Cdd:COG1009 430 LVF 432
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
156-290 |
4.97e-03 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 38.39 E-value: 4.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 156 ITGAIMGLNQMSLRKLMAYSSINHIAWMLAAMQSNLVIWMQYILLYSTLTIII-SLMFKSHNIFMMNELFMSNKNL---- 230
Cdd:PRK12663 284 VIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVkTALFLIAGSLVRLTGYRSLQYLggly 363
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1938966128 231 ----MMSKLTLMMsVLSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMKMF 290
Cdd:PRK12663 364 rkepLFGALFLIL-IFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIF 426
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
95-319 |
6.88e-03 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 37.54 E-value: 6.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 95 MSFLLKIGAAPLHFWLPEVMENLSWDNCIIIMTWQKIAPMSALqyLQTNQSIMMTFILTSAITGAIMGLNQMSLRKLMAY 174
Cdd:MTH00091 65 LILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVL--LQFFSKNFFFLLLFGLLICFFQMFLLKSYKNLLIL 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 175 SSINHIAWMLAAMQSNLVIWMQYILLYSTLTIIISLMFKSHNIFMMNElfmsnknlmmskltlMMSVLSMGGLPPLLGFL 254
Cdd:MTH00091 143 SSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVS---------------WETLLVFMNLPFSVTFF 207
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1938966128 255 PKWLVIQELLVN-SLFITMVTLIMSSTITLYFYMKMFMSSGMYSFMESKWNTNKIYLTKMEMITLF 319
Cdd:MTH00091 208 VKIFSLSEILKVlGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273
|
|
| PRK07691 |
PRK07691 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
236-293 |
7.85e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 38.01 E-value: 7.85e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1938966128 236 TLMMSVLSMGGLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMKMFMSS 293
Cdd:PRK07691 375 MFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKG 432
|
|
| PRK12662 |
PRK12662 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
146-289 |
9.62e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 37.79 E-value: 9.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966128 146 IMMTFILTSAITGAIMGLNQMSLRKLMAYSSINHIAWMLAAMQSN----LVIWMQYILLYStltIIISLMFK-----SHN 216
Cdd:PRK12662 281 VFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNtyygLAAAVAYIVNHS---IVKSALFMvsgsiSYH 357
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1938966128 217 IFMMNELFMSNKNLMMSKLTLMMSVLSMG--GLPPLLGFLPKWLVIQELLVNSLFITMVTLIMSSTITLYFYMKM 289
Cdd:PRK12662 358 FGTTKLEDCLNLWKSMPKITLAFVLLSLSliGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
|
|
| |
