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Conserved domains on  [gi|1938966215|gb|QPK42134|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Paragavialidium sichuanense]

Protein Classification

NADH dehydrogenase subunit 4L( domain architecture ID 10009597)

NADH dehydrogenase subunit 4L is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 2-90 5.44e-13

NADH dehydrogenase subunit 4L; Provisional


:

Pssm-ID: 177218  Cd Length: 89  Bit Score: 58.63  E-value: 5.44e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966215  2 FLMSVYFMMIFFSGLFIFSSVRNHLLLVLLSLEYLVLGVFFYIFMYLNYYGYVESFLIIFLVFSVCEGALGLSVLVQMIR 81
Cdd:MTH00162   1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                 ....*....
gi 1938966215 82 FCGNDYVLS 90
Cdd:MTH00162  81 SHGNDYFSS 89
 
Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 2-90 5.44e-13

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 58.63  E-value: 5.44e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966215  2 FLMSVYFMMIFFSGLFIFSSVRNHLLLVLLSLEYLVLGVFFYIFMYLNYYGYVESFLIIFLVFSVCEGALGLSVLVQMIR 81
Cdd:MTH00162   1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                 ....*....
gi 1938966215 82 FCGNDYVLS 90
Cdd:MTH00162  81 SHGNDYFSS 89
 
Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 2-90 5.44e-13

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 58.63  E-value: 5.44e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966215  2 FLMSVYFMMIFFSGLFIFSSVRNHLLLVLLSLEYLVLGVFFYIFMYLNYYGYVESFLIIFLVFSVCEGALGLSVLVQMIR 81
Cdd:MTH00162   1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                 ....*....
gi 1938966215 82 FCGNDYVLS 90
Cdd:MTH00162  81 SHGNDYFSS 89
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 1-88 2.44e-07

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 44.45  E-value: 2.44e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966215  1 MFLMSVYFMMIFFSGLFIFSSVRNHLLLVLLSLEYLVLGVFFYIFMYLNYYGYVESFLIIFLVFSVCEGALGLSVLVQMI 80
Cdd:MTH00149   2 MFMLLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMFSSSGLISFSSYLFLIILTFGACEASLGLSLLVSLI 81


                 ....*...
gi 1938966215 81 RFCGNDYV 88
Cdd:MTH00149  82 RLHGNDYV 89
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 1-96 1.90e-03

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 34.56  E-value: 1.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938966215  1 MFLMSVYFMMIFFSGLFIFSSVRNHLLLVLLSLEYLVLGVFFYIFMYLNYYGYVESFLIIFLVFSVCEGALGLSVLVQMI 80
Cdd:MTH00188   2 FFSMILVILLFVVLGLFTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSYMEKELYLSLVLLTFAACEASVGLALLVSLI 81

                         90
                 ....*....|....*.
gi 1938966215 81 RFCGNDYVLSSFLFLC 96
Cdd:MTH00188  82 RSHGSDYVSSLNLIKC 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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