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Conserved domains on  [gi|1939459537|gb|QPL16981|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Chorthippus sp. AHNU01]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-338 5.29e-91

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 275.16  E-value: 5.29e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537   1 MNNNSKKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSFTPMLTNS-NMMMNESAIKYFIVQAMASTMLLFSILLIQM 79
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKkNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  80 KYMISWEkqlIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVLSYCIQLKtFIFLVNILSIYI 159
Cdd:MTH00160   81 NLMLFNN---ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 160 GAMGGLNQTSLKQILAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIMVLLFKSMNLSMLNQIFTANNVKTEIKFIL 239
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 240 FLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRISFSALILSYSENSWSLSIKTKKPMLVLP 319
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1939459537 320 FMVVISPMGLICSSTLISL 338
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-338 5.29e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 275.16  E-value: 5.29e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537   1 MNNNSKKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSFTPMLTNS-NMMMNESAIKYFIVQAMASTMLLFSILLIQM 79
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKkNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  80 KYMISWEkqlIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVLSYCIQLKtFIFLVNILSIYI 159
Cdd:MTH00160   81 NLMLFNN---ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 160 GAMGGLNQTSLKQILAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIMVLLFKSMNLSMLNQIFTANNVKTEIKFIL 239
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 240 FLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRISFSALILSYSENSWSLSIKTKKPMLVLP 319
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1939459537 320 FMVVISPMGLICSSTLISL 338
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-281 2.62e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.47  E-value: 2.62e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  24 SNSWLGVWMGLEINLLSFTPM--LTNSNMMMNESAIKYFIVQAMASTMLLFSILLI--------------QMKYMISWEK 87
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLigYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  88 QLIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLIL-MTWQKIAPMMVL-------SYCIQLKTFIFLVNILSIYI 159
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 160 GAMGGLNQTSLKQILAYSSISHLGWMISSLVV----SENVWELYFLVYSLLSMIMVLLFKSMNLSM-----LNQIFTANN 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRvhtrnIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1939459537 231 VKTEIKFILFLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLT 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-291 3.31e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 94.03  E-value: 3.31e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537   8 LLFLSSLmmGTILSISSNSWLGVWMGLEINLLSFTPM--LTNSNMMMNESAIKYFIVQAMASTMLLF----------SIL 75
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLvaFRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  76 LIQMKYMISWEKQLIPSM-----MIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVL---------SY 141
Cdd:COG1007   185 LAGIAAALAAGGANSPLLllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 142 CIQLKTFIFLVNILSIYIGAMGGLNQTSLKQILAYSSISHLGWMISSLVV-SENVWE---LYFLVYSLLSM---IMVLL- 213
Cdd:COG1007   265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgTPLGVSaalFYLLAYLFMNLgafAVILLl 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 214 ----FKSMNLSMLNQIFTANNVKTeikFILFLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYL 289
Cdd:COG1007   345 srkgGEAEEIEDLAGLARRSPLLA---LAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421


                  ..
gi 1939459537 290 RI 291
Cdd:COG1007   422 RV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-291 1.06e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.46  E-value: 1.06e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  17 GTILSISSNSWLGVWMGLEINLLSFTPMLTNS--NMMMNESAIKYFIVQAMASTMLLF---------------SILLIQM 79
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKrkSRFSTEAGLKYFILGAFSSGLLLFgisliygftgslnfeDLLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  80 KYMISWEKQLIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIA---PMMVLSYCIQ------LKTFIF 150
Cdd:TIGR01770 194 NGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILfgfseaWQIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 151 LVNILSIYIGAMGGLNQTSLKQILAYSSISHLGW-MISSLVVSENVWE---LYFLVYSLLSMIMVLLFKSMN-------- 218
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLLRsykdewie 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1939459537 219 -LSMLNQIFTANNVkteIKFILFLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRI 291
Cdd:TIGR01770 354 yISDFAGLFKTNPI---LAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-338 5.29e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 275.16  E-value: 5.29e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537   1 MNNNSKKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSFTPMLTNS-NMMMNESAIKYFIVQAMASTMLLFSILLIQM 79
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKkNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  80 KYMISWEkqlIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVLSYCIQLKtFIFLVNILSIYI 159
Cdd:MTH00160   81 NLMLFNN---ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 160 GAMGGLNQTSLKQILAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIMVLLFKSMNLSMLNQIFTANNVKTEIKFIL 239
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 240 FLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRISFSALILSYSENSWSLSIKTKKPMLVLP 319
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1939459537 320 FMVVISPMGLICSSTLISL 338
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 7-297 1.63e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 189.65  E-value: 1.63e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537   7 KLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSFTPMLTNSNM-MMNESAIKYFIVQAMASTMLLFSILLIQM---KYM 82
Cdd:MTH00112    6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHpRATEAATKYFLTQAAASALILFSSTTNAWntgQWD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  83 ISWEKQLIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVLSYCIQL--KTFIFLVNILSIYIG 160
Cdd:MTH00112   86 ITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSlnPTLLLTLAILSTLIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 161 AMGGLNQTSLKQILAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIMVLLFKSMNLSMLNQIFTANNVKTEIKFILF 240
Cdd:MTH00112  166 GWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLM 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1939459537 241 LSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRISFSALI 297
Cdd:MTH00112  246 LTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTI 302
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 8-339 2.32e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 189.29  E-value: 2.32e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537   8 LLFLSSLMMGTILSISSNSWLGVWMGLEINLLSFTPMLT-NSNMMMNESAIKYFIVQAMASTMLLFSILLIQM---KYMI 83
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMkKHNPRSTEAATKYFLTQATASMLLMMAIIINLMysgQWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  84 SWEKQLIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVL---SYCIQLKTFIFLvNILSIYIG 160
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINPNLLLTL-AILSILIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 161 AMGGLNQTSLKQILAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIMVLLFKSMNLSMLNQIFTANNVKTEIKFILF 240
Cdd:MTH00105  166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 241 LSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRISFS-ALILSYSENSWSLSI--KTKKPMLV 317
Cdd:MTH00105  246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYStSLTMFPSTNNMKMKWqfENTKPMTL 325

                         330       340
                  ....*....|....*....|..
gi 1939459537 318 LPFMVVISPMGLICSSTLISLY 339
Cdd:MTH00105  326 LPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 8-339 2.69e-56

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 186.68  E-value: 2.69e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537   8 LLFLSSLMMGTILSISSNSWLGVWMGLEINLLSFTPMLT-NSNMMMNESAIKYFIVQAMASTMLLFSILLIQM---KYMI 83
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSsNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWlsgSWSI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  84 SWEKQLIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVLSYCIQLKTF--IFLVNILSIYIGA 161
Cdd:MTH00041   87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSniLILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 162 MGGLNQTSLKQILAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIMVLLFKSMNLSMLNQIFTANNVKTEIKFILFL 241
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 242 SLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRISFSALILSYSENS-----WSLSIKTKKPML 316
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSislfsWRNSGNITVYGV 326

                         330       340
                  ....*....|....*....|...
gi 1939459537 317 VLPFMVVISPMGLICSSTLISLY 339
Cdd:MTH00041  327 ILSILSSISILGLLLIPLFLSFL 349
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 10-339 2.01e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 183.97  E-value: 2.01e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  10 FLSSLMMGTILSISSNSWLGVWMGLEINLLSFTPMLTNSNM-MMNESAIKYFIVQAMASTMLLFSILL---IQMKYMISW 85
Cdd:MTH00070    9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHpRATEAATKYFLTQASASALILFSSTInawFTGEWTIMN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  86 EKQLIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVLSYCIQL--KTFIFLVNILSIYIGAMG 163
Cdd:MTH00070   89 MQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLlnSNLLIIMGLLSTLIGGWG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 164 GLNQTSLKQILAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIMVLLFKSMNLSMLNQIFTANNVKTEIKFILFLSL 243
Cdd:MTH00070  169 GLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTL 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 244 LSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRISFsALILSYSENSWSLSIK---TKKPMLVLPF 320
Cdd:MTH00070  249 LSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSY-AMSLTTSPNTSNSKLYwrfKNKTNNLLSL 327

                         330
                  ....*....|....*....
gi 1939459537 321 MVVISPMGLICSSTLISLY 339
Cdd:MTH00070  328 TIILSLMLLPITPTILNLF 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 9-338 1.10e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 171.91  E-value: 1.10e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537   9 LFLSSLMMGTILSISSNSWLGVWMGLEINLLSFTPMLTNSNM-MMNESAIKYFIVQAMASTMLLFSILL---IQMKYMIS 84
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHpRAVEATTKYFLTQATAAAMILFASTTnawLTGQWDIQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  85 WEKQLIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVLsycIQLK----TFIFLVNILSIYIG 160
Cdd:MTH00135   88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALI---LQIAptnpTLLITLGLTSTLVG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 161 AMGGLNQTSLKQILAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIMVLLFKSMNLSMLNQIFTANNVKTEIKFILF 240
Cdd:MTH00135  165 GWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTP 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 241 LSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRISFsALILSYSEN------SWSLsiKTKKP 314
Cdd:MTH00135  245 LILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSY-AMTLTISPNtlngttPWRL--PSTQL 321

                         330       340
                  ....*....|....*....|....
gi 1939459537 315 MLVLPFMVVISPMGLICSSTLISL 338
Cdd:MTH00135  322 TLPLAISTTATLMLLPLTPAILAL 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 8-338 2.33e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 170.92  E-value: 2.33e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537   8 LLFLSSLMMGTILSISSNSWLGVWMGLEINLLSFTPMLTNSNMMMN-ESAIKYFIVQAMASTMLLFSILLIQM---KYMI 83
Cdd:MTH00200    7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKvEATTKYFIIQATASALLLFGGLLNAWtsgQWGI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  84 SWEKQLIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVLS--YCIQLKTFIFLVNILSIYIGA 161
Cdd:MTH00200   87 SEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 162 MGGLNQTSLKQILAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIMVLLFKSMNLSMLNQIFTANNVKTEIKFILFL 241
Cdd:MTH00200  167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 242 SLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRISF-SALILSYSENSWSLSIKTKKPM-LVLP 319
Cdd:MTH00200  247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYlTLLTLSPNQINMMSSWRTKSNSnLLVG 326

                         330
                  ....*....|....*....
gi 1939459537 320 FMVVISPMGLICSSTLISL 338
Cdd:MTH00200  327 LLLLLSILGLPLTPQLLFL 345
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-325 2.36e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 170.24  E-value: 2.36e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537   9 LFLSSLMMGTILSISSNSWLGVWMGLEINLLSFTPMLT-NSNMMMNESAIKYFIVQAMASTMLLFSILLIQMKYMISwek 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSqNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLS--- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  88 qLIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVLSYCIQLKTFIFLVNILSIYIGAMGGLNQ 167
Cdd:MTH00197   79 -LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQ 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 168 TSLKQILAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIMVLLFKSMNLSMLNQIFTANNVKTEIKFILFLSLLSLG 247
Cdd:MTH00197  158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1939459537 248 GLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRISFSALILSYSENSWSLSIKTKKPMLVLPFMVVIS 325
Cdd:MTH00197  238 GLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLP 315
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 7-321 5.25e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 169.68  E-value: 5.25e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537   7 KLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSFTPMLTNSNMMMN-ESAIKYFIVQAMASTMLLFSILLIQMKYMISW 85
Cdd:MTH00144    6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSEsESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  86 EkqlipSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVLSYCI---QLKTFIFLVNILSIYIGAM 162
Cdd:MTH00144   86 S-----MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlyWLAYLLCVISVLSALVGSI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 163 GGLNQTSLKQILAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIMVLLFKSMNLSMLNQIFTANNVKTEiKFILFLS 242
Cdd:MTH00144  161 GGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKT-GLSIISL 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1939459537 243 LLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRISFSALILSYSENSWSLSIKTKKPMLVLPFM 321
Cdd:MTH00144  240 LLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSIISLNLL 318
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 8-299 6.90e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 156.09  E-value: 6.90e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537   8 LLFLSSLMMGTILSISSNSWLGVWMGLEINLLSFTPMLTNSNMMM-NESAIKYFIVQAMASTMLLFSIlliQMKYMISWE 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQeSEAAVKYFLAQALGSGLLLLGM---TMMWSFPSL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  87 KQLIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVLSYC--IQLKTFIFLVNILSIYIGAMGG 164
Cdd:MTH00011   86 LKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtsHNILPMMTSMAAMSALAGGLGG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 165 LNQTSLKQILAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIMVLLFKSMNLSMLNQIFTANNVKTEIKFILFLSLL 244
Cdd:MTH00011  166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1939459537 245 SLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRISFSALILS 299
Cdd:MTH00011  246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLS 300
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-281 2.62e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.47  E-value: 2.62e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  24 SNSWLGVWMGLEINLLSFTPM--LTNSNMMMNESAIKYFIVQAMASTMLLFSILLI--------------QMKYMISWEK 87
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLigYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  88 QLIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLIL-MTWQKIAPMMVL-------SYCIQLKTFIFLVNILSIYI 159
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 160 GAMGGLNQTSLKQILAYSSISHLGWMISSLVV----SENVWELYFLVYSLLSMIMVLLFKSMNLSM-----LNQIFTANN 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRvhtrnIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1939459537 231 VKTEIKFILFLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLT 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-291 1.33e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 95.27  E-value: 1.33e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537   8 LLFLSSLMmGTILSISSNSWLGVWMGLEINLLSFTPM--LTNSNMMMNESAIKYFIVQAMASTMLLFSILLI-------- 77
Cdd:PRK05777  107 LLVLFALL-GMMVMVSANDLLTLFLGLELLSLPLYALaaLRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLygatgsls 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  78 --QMKYMISWEKQ-----LIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVL---------SY 141
Cdd:PRK05777  186 faGIAKALADGSGnslllLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafgGL 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 142 CIQLKTFIFLVNILSIYIGAMGGLNQTSLKQILAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIMVLLFKSMNLSM 221
Cdd:PRK05777  266 SEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAFGVISLL 345

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1939459537 222 LNQIFTANNVKT---------EIKFILFLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRI 291
Cdd:PRK05777  346 RRKGGEAESISDfaglskrspLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-291 3.31e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 94.03  E-value: 3.31e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537   8 LLFLSSLmmGTILSISSNSWLGVWMGLEINLLSFTPM--LTNSNMMMNESAIKYFIVQAMASTMLLF----------SIL 75
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLvaFRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  76 LIQMKYMISWEKQLIPSM-----MIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVL---------SY 141
Cdd:COG1007   185 LAGIAAALAAGGANSPLLllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 142 CIQLKTFIFLVNILSIYIGAMGGLNQTSLKQILAYSSISHLGWMISSLVV-SENVWE---LYFLVYSLLSM---IMVLL- 213
Cdd:COG1007   265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgTPLGVSaalFYLLAYLFMNLgafAVILLl 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 214 ----FKSMNLSMLNQIFTANNVKTeikFILFLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYL 289
Cdd:COG1007   345 srkgGEAEEIEDLAGLARRSPLLA---LAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421


                  ..
gi 1939459537 290 RI 291
Cdd:COG1007   422 RV 423
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-291 2.88e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 90.47  E-value: 2.88e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  16 MGTILSISSNSWLGVWMGLEINLLSFTPML--TNSNMMMNESAIKYFIVQAMASTMLLFSI----------------LLI 77
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSLFILIaqNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsyinLVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  78 QMKYMISWEKQLIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVLSYCIQLKTFIFLVNILSI 157
Cdd:MTH00196   84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 158 YIGAMGGLNQTSLKQILAYSSISHLGWMISSLVV----SENVWELYFLVYSLLSM--IMVLLFKSMNLSMLNQIFTANNV 231
Cdd:MTH00196  164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSIcvFSIILALNVYKNLIIEFSGLSRR 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 232 KTEIKFILFLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRI 291
Cdd:MTH00196  244 LPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 16-291 1.97e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 85.84  E-value: 1.97e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  16 MGTILSISSNSWLGVWMGLEINLLSFTPM--LTNSNMMMNESAIKYFIVQAMASTMLLF------------SILLIQMKY 81
Cdd:MTH00199  108 LGSLLLVSSINWLSIYLAIELQTLTLFILvaLKRDSAYSTEAGLKYFVLGAVSSGLFLFgcallygltgetSIQGINSIL 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  82 MISWEKQLIPSmmiwsSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVLSYCIQLKTFIFLVNILSIYIGA 161
Cdd:MTH00199  188 TGDVGKILITI-----SLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGA 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 162 MGGLNQTSLKQILAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIM------VLLFKSMNLSMLNQIFTANNVKTEI 235
Cdd:MTH00199  263 IGALNQTKIKRLLAYSGIGHMGFILFGVAIGSFESIQASLIYMIIYVIMsicsfsIILSLKLTKGLIVEVSGLSRKNPVI 342

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1939459537 236 KFILFLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRI 291
Cdd:MTH00199  343 ALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-291 1.06e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.46  E-value: 1.06e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  17 GTILSISSNSWLGVWMGLEINLLSFTPMLTNS--NMMMNESAIKYFIVQAMASTMLLF---------------SILLIQM 79
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKrkSRFSTEAGLKYFILGAFSSGLLLFgisliygftgslnfeDLLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  80 KYMISWEKQLIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIA---PMMVLSYCIQ------LKTFIF 150
Cdd:TIGR01770 194 NGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILfgfseaWQIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 151 LVNILSIYIGAMGGLNQTSLKQILAYSSISHLGW-MISSLVVSENVWE---LYFLVYSLLSMIMVLLFKSMN-------- 218
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLLRsykdewie 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1939459537 219 -LSMLNQIFTANNVkteIKFILFLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRI 291
Cdd:TIGR01770 354 yISDFAGLFKTNPI---LAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-291 1.19e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 71.81  E-value: 1.19e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  16 MGTILSISSNSWLGVWMGLEINLLSFTPMLTNSNMMMN----------ESAIKYFIVQAMASTMLLF------------- 72
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGShfpspgntppESGLKYWILGAMSSGFYLFgcalyfgftgneg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  73 ---SILLIQMKYM-ISWEKQLIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVLSYCIQLKTF 148
Cdd:MTH00198  279 mlgTILSATLETTnIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 149 IFLVNILSIYIGAMGGLNQTSLKQILAYSSISHLGWMIssLVVSENVWE---------LYFLVYSLLSMIMVLLFKSMN- 218
Cdd:MTH00198  359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL--IGVSAGTYEslqaswtyaVTYLVSALASFTVICTLEEFGt 436

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 219 -----------------LSMLNQIFTANNVKTEIKFILFLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLL- 280
Cdd:MTH00198  437 rtptsrqrdgsfgnynlVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVa 516

                         330
                  ....*....|....*..
gi 1939459537 281 ------TTITLYYYLRI 291
Cdd:MTH00198  517 lfaiicTCISAFYYIRI 533
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-291 5.81e-10

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 60.16  E-value: 5.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  10 FLSSLMMGTILSISSNSWLGVWMGLEINLL-SFTPMLTNSNMMMNESAIKYFIVQAMASTMLLFSILLIQ-------MKY 81
Cdd:COG0651   112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLaSYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYgatgtlnMAD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  82 MISWEKQLIPSMMIWSSLLL------KIGAAPFHFWFPEVM-KASSWINCL------------ILMTWQKIAPMMVLSYc 142
Cdd:COG0651   192 LAARLAELDPGLLLAAFALLlvgfgiKAALFPLHFWLPDAYpAAPSPVSALlsglltkvgvyaILRVLTLLFGADPALF- 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 143 iqLKTFIFLVNILSIYIGAMGGLNQTSLKQILAYSSISHLGWMISSLVVSeNVWELYFLVYSLL--SMIMVLLF------ 214
Cdd:COG0651   271 --LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLG-TPLGLAGALFHLLnhALAKALLFlaagai 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 215 ----KSMNLSMLNQIFTANNVkteIKFILFLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLR 290
Cdd:COG0651   348 eratGTRDLDKLGGLGKRMPL---TAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVR 424


                  .
gi 1939459537 291 I 291
Cdd:COG0651   425 I 425
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 54-295 3.73e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 54.72  E-value: 3.73e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  54 ESAIKYFIVQAMASTMLLFSILLIQMKY------MISWEKQLIPSM-------MIWSSLLLKIGAAPFHFWFPEVM-KAS 119
Cdd:PRK08376  172 EAGIKYMFVGSLASSMVLLGIALLYGQYgtlnmaYLAVKMSENPTVvakialaLFIAGLAMKSGAVPVHMWLPDAYpAAP 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 120 SWINCLILMTWQ-KIAPMMVLSYCIQLKTF--------IFLVNILSIYIGAMGGLNQTSLKQILAYSSISHLGWMISSLV 190
Cdd:PRK08376  252 SSISAMLLVIKQaGLYALARVLFSIYGPAInlatvgwvIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLG 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 191 VSENVWEL--------------------YFLVYSLLSMIMVLLFKSMNLSMLNQI--FTANNVKTEIKFIlfLSLLSLGG 248
Cdd:PRK08376  332 VGLAALGDpamasygeialaggiyhivnHALYKALLFLTAGAVIYETGTRNLNELggLARTMPKTTIAFL--IGAAAIVG 409

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1939459537 249 LPPFLGFMPKWIIIQ-LLIENNMTAIMAIMVllTTITLYYYLRISFSA 295
Cdd:PRK08376  410 LPPFNGFASKWLIYEsSALFNPILGVIAMIG--SVLTLASFVKVFHTA 455
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 98-291 7.34e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 47.57  E-value: 7.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  98 SLLLKIGAAPFHFWFPEVM-KASSWINCLILMTWQKIAPMMVLSYCIQLKTFIFLVN-----------ILSIYIGAMGGL 165
Cdd:PRK08375  211 ALALKAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRFAlglgwllavlaLLSMLVGSLAAL 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 166 NQTSLKQILAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIM-----------VLLFKSMNLSMLNQI-----FTAn 229
Cdd:PRK08375  291 GQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMkgalflaagaiEVTYGTRRLSELSGLgrrmpLTA- 369

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1939459537 230 nvkteikFILFLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRI 291
Cdd:PRK08375  370 -------AAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRI 424
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
53-191 5.37e-05

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 44.66  E-value: 5.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  53 NESAIKYFIVQAMASTMLLFSILLIqmkYMISW-EKQL--IPSMMIWSSLLL--------------KIGAAPFHFWFPEV 115
Cdd:PRK02504  160 NEAALKYLLIGAASSAIFLYGSSLL---YGLSGgSTQLsaIALALITSPSLGlalalvfviagiafKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 116 MKASSWINCLILMTWQKIA----PMMVLSYCIQLKT----FIFLV-NILSIYIGAMGGLNQTSLKQILAYSSISHLGWMI 186
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDeqwkLLFTAlAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316


                  ....*
gi 1939459537 187 SSLVV 191
Cdd:PRK02504  317 IGLVA 321
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 55-186 9.50e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 43.77  E-value: 9.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  55 SAIKYFIVQAMASTMLLFSILLIQMKYMISW------EKQLIPSMMIWSSLLLKIGAA------PFHFWFPEVMKASSWI 122
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGGTFdllellNLPLPFGVQTWLFLAFFIAFAvkvplfPLHTWLPDAHVEAPTA 236

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1939459537 123 NCLILM-TWQKIAPMMVLSYCIQL--------KTFIFLVNILSIYIGAMGGLNQTSLKQILAYSSISHLGWMI 186
Cdd:TIGR01972 237 GSVILAgVLLKMGTYGFLRFNLPLfpdaslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 55-192 1.79e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 43.22  E-value: 1.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  55 SAIKYFIVQAMASTMLLFSILLI-------QMKYMISWEKQLIPS-MMIWSSLLLKIGAA------PFHFWFPEVMKASS 120
Cdd:COG1009   163 AARKAFLVTRVGDLGLLLGILLLgaiagtlNFSELLAAAPTILSSpLLTLILLLLLLGAFgksaqfPLHFWLPDAMEGPT 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 121 WINCLI-----------LMTwqKIAPMMVLSYCIQlkTFIFLVNILSIYIGAMGGLNQTSLKQILAYSSISHLGWMISSL 189
Cdd:COG1009   243 PVSALLhaatmvkagvyLLA--RLSPLFALSPVWL--TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318


                  ...
gi 1939459537 190 VVS 192
Cdd:COG1009   319 GVG 321
PRK12650 PRK12650
DUF4040 family protein;
107-191 1.87e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.49  E-value: 1.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 107 PFHFWFPEVMKASSWINCLILmtwqkiAPMMVlsyciqlKTFIFLV-------------NILSIYIG-------AMGGLN 166
Cdd:PRK12650  226 PFHFWLPEAMAAITPVSAFLH------AAAVV-------KAGIYLLlrfspvfhdvavwNWLLIIVGmitalmgAVFAVQ 292

                          90       100
                  ....*....|....*....|....*
gi 1939459537 167 QTSLKQILAYSSISHLGWMISSLVV 191
Cdd:PRK12650  293 KTDLKKLTAYSTVSQLGWIVATIGV 317
ndhB CHL00049
NADH dehydrogenase subunit 2
 53-193 5.31e-04

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 41.53  E-value: 5.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  53 NESAIKYFIVQAMASTMLL--FSILL------IQMKYMIS--WEKQLIPSMMIWSSLLL-------KIGAAPFHFWFPEV 115
Cdd:CHL00049  161 NEATMKYLLMGGASSSILVygFSWLYglsggeIELQEIVNglINTQMYNSPGISIALIFitvgigfKLSLAPFHQWTPDV 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 116 MKASSWINCLILMTWQKIApmmVLSYCIQLKTFIF------------LVNILSIYIGAMGGLNQTSLKQILAYSSISHLG 183
Cdd:CHL00049  241 YEGSPTPVVAFLSVTSKVA---ASALATRIFDIPFyfssnewhllleILAILSMILGNLIAITQTSMKRMLAYSSIGQIG 317

                         170
                  ....*....|
gi 1939459537 184 WMISSLVVSE 193
Cdd:CHL00049  318 YVIIGIIVGD 327
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 94-324 7.89e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 40.62  E-value: 7.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  94 MIWSSLLLKIGAAPFHFWFPEVMKASSWINCLILMTWQKIAPMMVLSYCIQLKTFIFLVNILSIYIGAMggLNQTSLKQI 173
Cdd:MTH00091   62 FQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQM--FLLKSYKNL 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 174 LAYSSISHLGWMISSLVVSENVWELYFLVYSLLSMIMVLLFKSMNLsmlnqiftannvkteIKFILFLSLLSLGGLPPFL 253
Cdd:MTH00091  140 LILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNK---------------LNFVSWETLLVFMNLPFSV 204

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1939459537 254 GFMPKWIIIQLLiennMTAIMAIMVLLTTITLYYYLRISFSALILSYSENSWSLSIKTKKPMLVLPFMVVI 324
Cdd:MTH00091  205 TFFVKIFSLSEI----LKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLS 271
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
145-329 9.38e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 40.70  E-value: 9.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 145 LKTFIFLVNILSIYIGAMGGLNQTSLKQILAYSSISHLGWMISSLVVSENV---WELYFLVYSLLSM--------IMVLL 213
Cdd:PRK12663  271 LHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAginGAIFYLVHDMVVKtalfliagSLVRL 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 214 FKSMNLSMLNQIFTANNVKTEIKFILFLSLLSLgglPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRISF 293
Cdd:PRK12663  351 TGYRSLQYLGGLYRKEPLFGALFLILIFAIGGL---PPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFF 427

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1939459537 294 SALI---LSYSENSWSLSIKTKKPMLVLPFMVVIspMGL 329
Cdd:PRK12663  428 LAYWgdkDGEEVNFKPIPLYRKLPLSILAVVVIA--MGI 464
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
107-186 1.72e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.01  E-value: 1.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 107 PFHFWFPEVMKASSWINCLIlmtwqKIAPMM------------VLSYCIQLKTFIFLVNILSIYIGAMGGLNQTSLKQIL 174
Cdd:PRK07376  245 PLHVWLPDAMEGPTPISALI-----HAATMVaagvflvarmypVFEQFPAVMTVIAWTGAITAFLGASIALTQNDIKKGL 319

                          90
                  ....*....|..
gi 1939459537 175 AYSSISHLGWMI 186
Cdd:PRK07376  320 AYSTISQLGYMV 331
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 149-294 3.05e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 39.18  E-value: 3.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 149 IFLVNILSIYIGAMGGLNQTSLKQILAYSSISHLGWMISSLVVSENVWELYFLVY--------SLLSMIMVLLFKSMNLS 220
Cdd:PRK12667  298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHiinhaiakSLLFLASGVFIHAAGTR 377

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1939459537 221 MLNQIFTANNVKTEIKFILFLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTAIMAIMVLLTTITLYYYLRISFS 294
Cdd:PRK12667  378 DIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-319 6.68e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 38.26  E-value: 6.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537   3 NNSKKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSFTPMLTNSNMMMNESAIKYFIVQAMASTMLLFSILLIQM--- 79
Cdd:PRK06589  114 SSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIytk 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537  80 -------KYMISWEKQLIPSMMIWSSLLLKIGAAPFHFWFPEVMKASSWINCLI---------LMTWQKIAPMM----VL 139
Cdd:PRK06589  194 tgnldfvSGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLhavivvktgLFCIYKILLYIfglsYL 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 140 SYCIQLKTFIFLVNILSIYIGAMGGLNQTSLKQILAYSSISHLGWMISSLVV----SENVWELYFLVYSLLSMIMVLLFK 215
Cdd:PRK06589  274 QRIFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFIltpkALGAAILHLVSHSFAKICLFYSMG 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939459537 216 SM-NLSMLNQIFTANNVKTEIK---FILFLSLLSLGGLPPFLGFMPKWIIIQLLIENNMTA---IMAIMVLLTTITL-YY 287
Cdd:PRK06589  354 SIySLKKEDQVDKLHGTSKSFPlisFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWlsiIVMLVVIASSILSaLY 433

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1939459537 288 YLRISFSALILSYSENSwslSIKTKKPMLVLP 319
Cdd:PRK06589  434 LLKILSSIYKPSLSENS---FITKSLPYLMQI 462
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 144-186 7.82e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 38.03  E-value: 7.82e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1939459537 144 QLKTFIFLVNILSIYIGAMGGLNQTSLKQILAYSSISHLGWMI 186
Cdd:PRK12665  271 GLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMV 313
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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