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Conserved domains on  [gi|1949544299|gb|QQD86638|]
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glycoprotein [Viral hemorrhagic septicemia virus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Rhabdo_glycop super family cl03047
Rhabdovirus spike glycoprotein; Frequently abbreviated to G protein. The glycoprotein spike is ...
41-433 1.70e-78

Rhabdovirus spike glycoprotein; Frequently abbreviated to G protein. The glycoprotein spike is made up of a trimer of G proteins. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating.


The actual alignment was detected with superfamily member pfam00974:

Pssm-ID: 425969  Cd Length: 442  Bit Score: 252.60  E-value: 1.70e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949544299  41 PLYTHPSNCRDDSFVPIRPAQLRCPHEFEDINKGLVSVPTRIihlPLSV-NSVSAV-ASGHYLHRVTYRVTCSTSFFGGQ 118
Cdd:pfam00974   3 PLYTIPEGCKLGKWSPVDASHLSCPNISEDENCGNISYFTYI---ELKVgYDLGAIkTQGFTCHGVVYETECYTNFFGGV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949544299 119 TIEKTILEAKLSRQEATDEAS-KDHEYPFFPEPSCIWMKNNVHKDITHYYKTPKTVSVDLYSRKFLNPDFIEGVCTTSPC 197
Cdd:pfam00974  80 TITFKRKHFRPSVKACRGAYNwTTAGSLHNPYPDSQWYRTVTTTKESLVIITPSSVLRDPYTRDLHDSDFIGGKCSNSPC 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949544299 198 QTHWQGVYWVG-ATPKAHCPTSETLEGHLFTRTHDhrvvKAIVAGHHPWG----------LTMACTVTFCETEWIKTDLG 266
Cdd:pfam00974 160 QTNHDYTVWMEdPGLPGACDSSQEIKAHIFTSSIG----KAASYGSEPCGfhdergayesLKGACKLELCGQQGIRLDDG 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949544299 267 DLIQVTGLGGTGKLTPKRCV-NTDVQMRGAT-DDFSYLNHLITNMAQRTECLDAHSDITASGKISSFLLSKFRPSHPGPG 344
Cdd:pfam00974 236 TWVSMVYNDGSEILSFPWCPeGQLVNMHGQRlDDIEHLEDLVKKSESREECLEALEEIISTNSVSPRRLSHFRKLVPGIG 315
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949544299 345 KAHYLLDGQIMRGDCDYEAVVSINYNSAQYKTVNNTWKSWKRVDNNTDGYDGMIFG--DKLIIPDIEKYQSVYDSGMLVQ 422
Cdd:pfam00974 316 KAYTIHNGSLMEGMCMYKRVDEVSKDRTTYRAATSFTKWERPFGDEWAGFNGIIIGpnGTTLIPEMQKYVLQQHMDLMLP 395
                         410
                  ....*....|.
gi 1949544299 423 RNLVEVPHLSI 433
Cdd:pfam00974 396 SSVKPLPHPLI 406
 
Name Accession Description Interval E-value
Rhabdo_glycop pfam00974
Rhabdovirus spike glycoprotein; Frequently abbreviated to G protein. The glycoprotein spike is ...
41-433 1.70e-78

Rhabdovirus spike glycoprotein; Frequently abbreviated to G protein. The glycoprotein spike is made up of a trimer of G proteins. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating.


Pssm-ID: 425969  Cd Length: 442  Bit Score: 252.60  E-value: 1.70e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949544299  41 PLYTHPSNCRDDSFVPIRPAQLRCPHEFEDINKGLVSVPTRIihlPLSV-NSVSAV-ASGHYLHRVTYRVTCSTSFFGGQ 118
Cdd:pfam00974   3 PLYTIPEGCKLGKWSPVDASHLSCPNISEDENCGNISYFTYI---ELKVgYDLGAIkTQGFTCHGVVYETECYTNFFGGV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949544299 119 TIEKTILEAKLSRQEATDEAS-KDHEYPFFPEPSCIWMKNNVHKDITHYYKTPKTVSVDLYSRKFLNPDFIEGVCTTSPC 197
Cdd:pfam00974  80 TITFKRKHFRPSVKACRGAYNwTTAGSLHNPYPDSQWYRTVTTTKESLVIITPSSVLRDPYTRDLHDSDFIGGKCSNSPC 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949544299 198 QTHWQGVYWVG-ATPKAHCPTSETLEGHLFTRTHDhrvvKAIVAGHHPWG----------LTMACTVTFCETEWIKTDLG 266
Cdd:pfam00974 160 QTNHDYTVWMEdPGLPGACDSSQEIKAHIFTSSIG----KAASYGSEPCGfhdergayesLKGACKLELCGQQGIRLDDG 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949544299 267 DLIQVTGLGGTGKLTPKRCV-NTDVQMRGAT-DDFSYLNHLITNMAQRTECLDAHSDITASGKISSFLLSKFRPSHPGPG 344
Cdd:pfam00974 236 TWVSMVYNDGSEILSFPWCPeGQLVNMHGQRlDDIEHLEDLVKKSESREECLEALEEIISTNSVSPRRLSHFRKLVPGIG 315
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949544299 345 KAHYLLDGQIMRGDCDYEAVVSINYNSAQYKTVNNTWKSWKRVDNNTDGYDGMIFG--DKLIIPDIEKYQSVYDSGMLVQ 422
Cdd:pfam00974 316 KAYTIHNGSLMEGMCMYKRVDEVSKDRTTYRAATSFTKWERPFGDEWAGFNGIIIGpnGTTLIPEMQKYVLQQHMDLMLP 395
                         410
                  ....*....|.
gi 1949544299 423 RNLVEVPHLSI 433
Cdd:pfam00974 396 SSVKPLPHPLI 406
 
Name Accession Description Interval E-value
Rhabdo_glycop pfam00974
Rhabdovirus spike glycoprotein; Frequently abbreviated to G protein. The glycoprotein spike is ...
41-433 1.70e-78

Rhabdovirus spike glycoprotein; Frequently abbreviated to G protein. The glycoprotein spike is made up of a trimer of G proteins. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating.


Pssm-ID: 425969  Cd Length: 442  Bit Score: 252.60  E-value: 1.70e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949544299  41 PLYTHPSNCRDDSFVPIRPAQLRCPHEFEDINKGLVSVPTRIihlPLSV-NSVSAV-ASGHYLHRVTYRVTCSTSFFGGQ 118
Cdd:pfam00974   3 PLYTIPEGCKLGKWSPVDASHLSCPNISEDENCGNISYFTYI---ELKVgYDLGAIkTQGFTCHGVVYETECYTNFFGGV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949544299 119 TIEKTILEAKLSRQEATDEAS-KDHEYPFFPEPSCIWMKNNVHKDITHYYKTPKTVSVDLYSRKFLNPDFIEGVCTTSPC 197
Cdd:pfam00974  80 TITFKRKHFRPSVKACRGAYNwTTAGSLHNPYPDSQWYRTVTTTKESLVIITPSSVLRDPYTRDLHDSDFIGGKCSNSPC 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949544299 198 QTHWQGVYWVG-ATPKAHCPTSETLEGHLFTRTHDhrvvKAIVAGHHPWG----------LTMACTVTFCETEWIKTDLG 266
Cdd:pfam00974 160 QTNHDYTVWMEdPGLPGACDSSQEIKAHIFTSSIG----KAASYGSEPCGfhdergayesLKGACKLELCGQQGIRLDDG 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949544299 267 DLIQVTGLGGTGKLTPKRCV-NTDVQMRGAT-DDFSYLNHLITNMAQRTECLDAHSDITASGKISSFLLSKFRPSHPGPG 344
Cdd:pfam00974 236 TWVSMVYNDGSEILSFPWCPeGQLVNMHGQRlDDIEHLEDLVKKSESREECLEALEEIISTNSVSPRRLSHFRKLVPGIG 315
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1949544299 345 KAHYLLDGQIMRGDCDYEAVVSINYNSAQYKTVNNTWKSWKRVDNNTDGYDGMIFG--DKLIIPDIEKYQSVYDSGMLVQ 422
Cdd:pfam00974 316 KAYTIHNGSLMEGMCMYKRVDEVSKDRTTYRAATSFTKWERPFGDEWAGFNGIIIGpnGTTLIPEMQKYVLQQHMDLMLP 395
                         410
                  ....*....|.
gi 1949544299 423 RNLVEVPHLSI 433
Cdd:pfam00974 396 SSVKPLPHPLI 406
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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