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Conserved domains on  [gi|1953441326|gb|QQL13607|]
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cytochrome b, partial (mitochondrion) [Niviventer gladiusmaculus]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 753.78  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   1 RKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00100    5 RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  81 NGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 160
Cdd:MTH00100   85 NGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 161 WGGFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVL 240
Cdd:MTH00100  165 WGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 241 FFPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTL 320
Cdd:MTH00100  245 FSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCL 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1953441326 321 YWILVANLFILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKMLK 374
Cdd:MTH00100  325 FWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 753.78  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   1 RKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00100    5 RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  81 NGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 160
Cdd:MTH00100   85 NGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 161 WGGFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVL 240
Cdd:MTH00100  165 WGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 241 FFPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTL 320
Cdd:MTH00100  245 FSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCL 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1953441326 321 YWILVANLFILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKMLK 374
Cdd:MTH00100  325 FWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-369 1.42e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 376.82  E-value: 1.42e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   7 LKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMF 86
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  87 FICLFLHVGRGMYYGSYTF---LeTWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 163
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 164 FSVDKATLTRFFAFH-FILPFIIAALVIVHLLFLHETGSNNPTGLD----SDADKIPFHPYYTIKDLLGVFILLLLLMTL 238
Cdd:COG1290   179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLGVFALL 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 239 VLFFPDllGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVVALILSILVLALLPLLHTSKQRSLTFRPI 316
Cdd:COG1290   259 AFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPV 336

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1953441326 317 TQTLYWILVANLFILTWIGGQPVehPFIIIGQLASISYFSIILILMPISGIIE 369
Cdd:COG1290   337 RTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-202 1.95e-98

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 290.42  E-value: 1.95e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   5 PLLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGAS 84
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  85 MFFICLFLHVGRGMYYGSY--TFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 162
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1953441326 163 GFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSN 202
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-200 7.71e-90

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 268.10  E-value: 7.71e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  14 FIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  94 VGRGMYYG--SYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 171
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1953441326 172 TRFFAFHFILPFIIAALVIVHLLFLHETG 200
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 254-290 8.17e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 48.25  E-value: 8.17e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1953441326 254 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVAL 290
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLM 101
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 753.78  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   1 RKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00100    5 RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  81 NGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 160
Cdd:MTH00100   85 NGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 161 WGGFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVL 240
Cdd:MTH00100  165 WGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 241 FFPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTL 320
Cdd:MTH00100  245 FSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCL 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1953441326 321 YWILVANLFILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKMLK 374
Cdd:MTH00100  325 FWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00119
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 684.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   1 RKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00119    6 RKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  81 NGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 160
Cdd:MTH00119   86 NGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWI 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 161 WGGFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVL 240
Cdd:MTH00119  166 WGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLAL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 241 FFPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTL 320
Cdd:MTH00119  246 FSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLL 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1953441326 321 YWILVANLFILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKMLK 374
Cdd:MTH00119  326 FWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
CYTB MTH00131
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 679.84  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   1 RKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00131    5 RKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  81 NGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 160
Cdd:MTH00131   85 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 161 WGGFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVL 240
Cdd:MTH00131  165 WGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLAL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 241 FFPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTL 320
Cdd:MTH00131  245 FSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFL 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1953441326 321 YWILVANLFILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKMLK 374
Cdd:MTH00131  325 FWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00074
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 663.30  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   1 RKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00074    6 RKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  81 NGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 160
Cdd:MTH00074   86 NGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWI 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 161 WGGFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVL 240
Cdd:MTH00074  166 WGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 241 FFPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTL 320
Cdd:MTH00074  246 FSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQIL 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1953441326 321 YWILVANLFILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKMLK 374
Cdd:MTH00074  326 FWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
CYTB MTH00191
cytochrome b; Provisional
 1-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 632.34  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   1 RKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00191    2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  81 NGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 160
Cdd:MTH00191   82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 161 WGGFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVL 240
Cdd:MTH00191  162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 241 FFPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTL 320
Cdd:MTH00191  242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVV 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1953441326 321 YWILVANLFILTWIGGQPVEHPFIIIGQLASISYFSIILILMPI 364
Cdd:MTH00191  322 FWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 7-362 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 611.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   7 LKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMF 86
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  87 FICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSV 166
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 167 DKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVLFFPDLL 246
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 247 GDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTLYWILVA 326
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1953441326 327 NLFILTWIGGQPVEHPFIIIGQLASISYFSIILILM 362
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-373 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 596.89  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   1 RKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00145    6 RKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  81 NGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 160
Cdd:MTH00145   86 NGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWV 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 161 WGGFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVL 240
Cdd:MTH00145  166 WGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 241 FFPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTL 320
Cdd:MTH00145  246 FFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVL 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1953441326 321 YWILVANLFILTWIGGQPVEHPFIIIGQLASISYFSIILILmPISGIIEDKML 373
Cdd:MTH00145  326 FWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 1-373 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 592.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   1 RKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00034    5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  81 NGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 160
Cdd:MTH00034   85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 161 WGGFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVL 240
Cdd:MTH00034  165 WGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLAL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 241 FFPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTL 320
Cdd:MTH00034  245 LFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIA 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1953441326 321 YWILVANLFILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKML 373
Cdd:MTH00034  325 FWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00016
cytochrome b; Validated
 1-374 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 558.91  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   1 RKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00016    6 RKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  81 NGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 160
Cdd:MTH00016   86 NGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWL 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 161 WGGFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVL 240
Cdd:MTH00016  166 WGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 241 FFPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTL 320
Cdd:MTH00016  246 LWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQIL 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1953441326 321 YWILVANLFILTWIGGQPVEHPFIIIGQLASISYFSiILILMPISGIIEDKMLK 374
Cdd:MTH00016  326 FWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLLK 378
CYTB MTH00022
cytochrome b; Validated
 1-374 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 515.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   1 RKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00022    4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  81 NGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 160
Cdd:MTH00022   84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWV 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 161 WGGFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVL 240
Cdd:MTH00022  164 WGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVY 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 241 FFPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTL 320
Cdd:MTH00022  244 FAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMA 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1953441326 321 YWILVANLFILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKMLK 374
Cdd:MTH00022  324 FWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 512.33  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   1 RKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00053    6 RKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  81 NGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 160
Cdd:MTH00053   86 NGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWV 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 161 WGGFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVL 240
Cdd:MTH00053  166 WGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVF 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 241 FFPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTL 320
Cdd:MTH00053  246 LFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKIL 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1953441326 321 YWILVANLFILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKMLK 374
Cdd:MTH00053  326 FWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 1-374 1.87e-177

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 497.91  E-value: 1.87e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   1 RKTHPLLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00224    6 RTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  81 NGASMFFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 160
Cdd:MTH00224   86 NGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWI 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 161 WGGFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVL 240
Cdd:MTH00224  166 WGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 241 FFPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTL 320
Cdd:MTH00224  246 FEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLL 325

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1953441326 321 YWILVANLFILTWIGGQPVEHPFIIIGQLASISYFSiILILMPISGIIEDKMLK 374
Cdd:MTH00224  326 FWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 15-370 1.99e-133

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 386.60  E-value: 1.99e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  15 IDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 94
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  95 GRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRF 174
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 175 FAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVL--FFPDLLGDPDNY 252
Cdd:MTH00033  176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENF 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 253 SPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTLYWILVANLFILT 332
Cdd:MTH00033  256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1953441326 333 WIGGQPV-EHPFIIIGQLASISYFSIILILMPISGIIED 370
Cdd:MTH00033  336 WIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-369 1.42e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 376.82  E-value: 1.42e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   7 LKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMF 86
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  87 FICLFLHVGRGMYYGSYTF---LeTWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 163
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 164 FSVDKATLTRFFAFH-FILPFIIAALVIVHLLFLHETGSNNPTGLD----SDADKIPFHPYYTIKDLLGVFILLLLLMTL 238
Cdd:COG1290   179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPErkktEKVDGVPFHPYYTVKDGFGFFVFLGVFALL 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 239 VLFFPDllGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVVALILSILVLALLPLLHTSKQRSLTFRPI 316
Cdd:COG1290   259 AFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPV 336

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1953441326 317 TQTLYWILVANLFILTWIGGQPVehPFIIIGQLASISYFSIILILMPISGIIE 369
Cdd:COG1290   337 RTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 8-362 4.03e-120

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 351.55  E-value: 4.03e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   8 KIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFF 87
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  88 ICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVD 167
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 168 KATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDlLGVFILLLLLMTLVLFFPDLLG 247
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 248 DPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQrslTFRPITQTLYWILVAN 327
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1953441326 328 LFILTWIGGQPVEHPFIIIGQLASISYFSIILILM 362
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-202 1.95e-98

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 290.42  E-value: 1.95e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   5 PLLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGAS 84
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  85 MFFICLFLHVGRGMYYGSY--TFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 162
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1953441326 163 GFSVDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSN 202
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 6-360 6.90e-92

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 279.56  E-value: 6.90e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326   6 LLKIINHAFIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASM 85
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  86 FFICLFLHVGRGMYYGSYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFS 165
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 166 VDKATLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGL-DSDADKIPFHPYYTIKDLLGVFILLLLLMTLVLFFPD 244
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 245 LLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVaLILSILVLALLPLLHTSKQRSLtfrpITQTLYWIL 324
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLI 315

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1953441326 325 VANLFILTWIGGQPVEHPFIIIGQLASISYFSIILI 360
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-200 7.71e-90

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 268.10  E-value: 7.71e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  14 FIDLPAPSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  94 VGRGMYYG--SYTFLETWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 171
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1953441326 172 TRFFAFHFILPFIIAALVIVHLLFLHETG 200
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 203-350 5.75e-47

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 156.65  E-value: 5.75e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 203 NPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVLFFPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPN 282
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1953441326 283 KLGGVVALILSILVLALLPLLHTSKQRSlTFRPITQTLYWILVANLFILTWIGGQPVEHPFIIIGQLA 350
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
84-249 1.25e-42

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 146.23  E-value: 1.25e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  84 SMFFICLFLHVGRGMYYGSYTFLE--TWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 161
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 162 GGFSVDKATLTRFFAFHF-ILPFIIAALVIVHLLFLHETGSNNPTGLDSDADKIPFHPYYTIKDLLGVFILLLLLMTLVL 240
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1953441326 241 FFPDLLGDP 249
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 29-204 1.41e-41

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 145.24  E-value: 1.41e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  29 FGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMYYGSYTFLE- 107
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 108 -TWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 185
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 1953441326 186 AALVIVHLLFLHETGSNNP 204
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
254-354 2.95e-41

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 140.31  E-value: 2.95e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 254 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILVLALLPLLHTSKQRSLTFRPITQTLYWILVANLFILTW 333
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1953441326 334 IGGQPVEHPFIIIGQLASISY 354
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
petB CHL00070
cytochrome b6
 20-204 4.12e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 128.30  E-value: 4.12e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326  20 PSNISSWWNFGSLLGLCLIIQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGMY 99
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953441326 100 YGSYTFLE--TWNIGVVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAF 177
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 1953441326 178 H-FILPFIIAALVIVHLLFLHETGSNNP 204
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 254-290 2.07e-08

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 52.87  E-value: 2.07e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1953441326 254 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVAL 290
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMM 102
petD CHL00058
cytochrome b6/f complex subunit IV
 254-290 7.93e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 51.16  E-value: 7.93e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1953441326 254 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVAL 290
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLM 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 254-290 8.17e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 48.25  E-value: 8.17e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1953441326 254 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVAL 290
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLM 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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