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Conserved domains on  [gi|1983828705|gb|QRN74895|]
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NS3 [Equine encephalosis virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Orbi_NS3 super family cl03281
Orbivirus NS3; The function of this Orbivirus non structural protein is uncertain. However it ...
 21-133 2.92e-04

Orbivirus NS3; The function of this Orbivirus non structural protein is uncertain. However it may play a role on release of the virus from infected cells.


The actual alignment was detected with superfamily member pfam01616:

Pssm-ID: 460267  Cd Length: 193  Bit Score: 40.58  E-value: 2.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983828705  21 YPPTAPVPPMMTWnnlkidsvdgmrdLALNILDKNITSTTGADECDKREKAMFASVAESAADSPAVRMIKIQIYSRVLDD 100
Cdd:pfam01616  39 AAKAAFAPSAEAF-------------RADEILDKAKRHTNEAILPKKAEDAAEAKKAEAFIDDTLLRAAKRALLEQICPK 105

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1983828705 101 MEKERVKAERRRAVLRLASY------TIITVMLLSTFLM 133
Cdd:pfam01616 106 LKDDLSAFKIKGAIIETPLLfaalnaLLGSVCLGASDLM 144
 
Name Accession Description Interval E-value
Orbi_NS3 pfam01616
Orbivirus NS3; The function of this Orbivirus non structural protein is uncertain. However it ...
 21-133 2.92e-04

Orbivirus NS3; The function of this Orbivirus non structural protein is uncertain. However it may play a role on release of the virus from infected cells.


Pssm-ID: 460267  Cd Length: 193  Bit Score: 40.58  E-value: 2.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983828705  21 YPPTAPVPPMMTWnnlkidsvdgmrdLALNILDKNITSTTGADECDKREKAMFASVAESAADSPAVRMIKIQIYSRVLDD 100
Cdd:pfam01616  39 AAKAAFAPSAEAF-------------RADEILDKAKRHTNEAILPKKAEDAAEAKKAEAFIDDTLLRAAKRALLEQICPK 105

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1983828705 101 MEKERVKAERRRAVLRLASY------TIITVMLLSTFLM 133
Cdd:pfam01616 106 LKDDLSAFKIKGAIIETPLLfaalnaLLGSVCLGASDLM 144
 
Name Accession Description Interval E-value
Orbi_NS3 pfam01616
Orbivirus NS3; The function of this Orbivirus non structural protein is uncertain. However it ...
 21-133 2.92e-04

Orbivirus NS3; The function of this Orbivirus non structural protein is uncertain. However it may play a role on release of the virus from infected cells.


Pssm-ID: 460267  Cd Length: 193  Bit Score: 40.58  E-value: 2.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1983828705  21 YPPTAPVPPMMTWnnlkidsvdgmrdLALNILDKNITSTTGADECDKREKAMFASVAESAADSPAVRMIKIQIYSRVLDD 100
Cdd:pfam01616  39 AAKAAFAPSAEAF-------------RADEILDKAKRHTNEAILPKKAEDAAEAKKAEAFIDDTLLRAAKRALLEQICPK 105

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1983828705 101 MEKERVKAERRRAVLRLASY------TIITVMLLSTFLM 133
Cdd:pfam01616 106 LKDDLSAFKIKGAIIETPLLfaalnaLLGSVCLGASDLM 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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