NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2028573570|gb|QUA11525|]
View 

NADH dehydrogenase subunit 2 (mitochondrion) [Ursus rossicus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 0e+00

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 521.33  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570   1 MKPPILIIITSTIILGTTIVLFSSHWLMIWIGFEMNMLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  81 SGHWTISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSINPNLLVAMAAT 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 161 SVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHTWNKSPLI 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 241 ASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFESM 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*..
gi 2028573570 321 KKMIFLPPLIVASTMLLPLTPMLSIMN 347
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 521.33  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570   1 MKPPILIIITSTIILGTTIVLFSSHWLMIWIGFEMNMLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  81 SGHWTISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSINPNLLVAMAAT 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 161 SVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHTWNKSPLI 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 241 ASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFESM 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*..
gi 2028573570 321 KKMIFLPPLIVASTMLLPLTPMLSIMN 347
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 23-299 2.51e-33

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 128.31  E-value: 2.51e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  23 SSHWLMIWIGFEMNMLAI-IPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTISMIPNPIASTV---- 97
Cdd:COG1007   121 ANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAALAAGGansp 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  98 --------ITIALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSINPNL-------LVAMAATSV 162
Cdd:COG1007   201 llllglvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLaadwqllLAVLAVLSM 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 163 LVGGWGGLNQTQLRKILAYSSIAHMGWM-AAIMVYNP---TLMILNLTIYIMMTLGTF--MLFMYNLSTTTLSLSH---T 233
Cdd:COG1007   281 TVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPlgvSAALFYLLAYLFMNLGAFavILLLSRKGGEAEEIEDlagL 360

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2028573570 234 WNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYA 299
Cdd:COG1007   361 ARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 1.04e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 115.10  E-value: 1.04e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  23 SSHWLMIWIGFEMNMLAIIP-ILMKKFNPRAMEASTKYFLTQATASMLLMLGIII-----------NLLHSGHWTISMIP 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLmynytgtlsfdELSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  91 NPIASTVITIALAMKLGLSPFHFWVPEVTQGISLSSGMILL-TWQKIAPL-----SVLYQISPSINPNLLVAMAATSVLV 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 165 GGWGGLNQTQLRKILAYSSIAHMGWMAAIM----VYNPTLMILNLTIYIMMTLGTFMLFM-----YNLSTTTLSLSHTWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2028573570 236 KSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITA 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 22-296 1.27e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 109.65  E-value: 1.27e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  22 FSSHWLMIWIGFEMNMLAI-IPILMKKFNPRAMEASTKYFLTQATASMLLMLGI-----------IINLLHSGHWTISMI 89
Cdd:TIGR01770 120 SSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGIsliygftgslnFEDLLLFLSNGMLNI 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  90 PNPIASTV-ITIALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSI-------NPNLLVAMAATS 161
Cdd:TIGR01770 200 SLLLLGIVlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIFLAIIAFLS 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 162 VLVGGWGGLNQTQLRKILAYSSIAHMGW-MAAIMVYNPTLM---ILNLTIYIMMTLGTFMLFMynlstTTLSLSHTWNKS 237
Cdd:TIGR01770 280 MLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIkavLFYIFIYALMSLGAFGVLS-----LLRSYKDEWIEY 354

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 238 -----------PLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRL 296
Cdd:TIGR01770 355 isdfaglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 521.33  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570   1 MKPPILIIITSTIILGTTIVLFSSHWLMIWIGFEMNMLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  81 SGHWTISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSINPNLLVAMAAT 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 161 SVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHTWNKSPLI 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 241 ASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFESM 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*..
gi 2028573570 321 KKMIFLPPLIVASTMLLPLTPMLSIMN 347
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 23-343 2.52e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 383.77  E-value: 2.52e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  23 SSHWLMIWIGFEMNMLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTISMIPNPIASTVITIAL 102
Cdd:MTH00135   23 SSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLAL 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 103 AMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSiNPNLLVAMAATSVLVGGWGGLNQTQLRKILAYS 182
Cdd:MTH00135  103 ALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYS 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 183 SIAHMGWMAAIMVYNPTLMILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHTWNKSPLIASLILALMLSLGGLPPLSGFIP 262
Cdd:MTH00135  182 SIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMP 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 263 KWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFESMKKMIFLPPLIVASTMLLPLTPM 342
Cdd:MTH00135  262 KWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLPLAISTTATLMLLPLTPA 341


                  .
gi 2028573570 343 L 343
Cdd:MTH00135  342 I 342
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 23-346 5.24e-119

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 347.20  E-value: 5.24e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  23 SSHWLMIWIGFEMNMLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTISMIPNPIASTVITIAL 102
Cdd:MTH00112   23 SNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLAL 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 103 AMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSINPNLLVAMAATSVLVGGWGGLNQTQLRKILAYS 182
Cdd:MTH00112  103 AMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFS 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 183 SIAHMGWMAAIMVYNPTLMILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHTWNKSPLIASLILALMLSLGGLPPLSGFIP 262
Cdd:MTH00112  183 SIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMP 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 263 KWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFeSMKKMIFLPPLIVASTMLLPLTPM 342
Cdd:MTH00112  263 KWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRT-KPKKNTLTATLTTLSTLLLPLSPM 341


                  ....
gi 2028573570 343 LSIM 346
Cdd:MTH00112  342 ILTI 345
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 20-346 7.40e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 336.89  E-value: 7.40e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  20 VLFSSHWLMIWIGFEMNMLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTISMIPNPIASTVIT 99
Cdd:MTH00070   20 TLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLT 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 100 IALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSINPNLLVAMAATSVLVGGWGGLNQTQLRKIL 179
Cdd:MTH00070  100 IALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIM 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 180 AYSSIAHMGWMAAIMVYNPTLMILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHTWNKSPLIASLILALMLSLGGLPPLSG 259
Cdd:MTH00070  180 AYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTG 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 260 FIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFESMKKMIfLPPLIVASTMLLPL 339
Cdd:MTH00070  260 FIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNL-LSLTIILSLMLLPI 338


                  ....*...
gi 2028573570 340 TP-MLSIM 346
Cdd:MTH00070  339 TPtILNLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 20-306 2.58e-88

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 269.11  E-value: 2.58e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  20 VLFSSHWLMIWIGFEMNMLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTISMIPNPIASTVIT 99
Cdd:MTH00041   20 VISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIIT 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 100 IALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSINPNLLVAMAATSVLVGGWGGLNQTQLRKIL 179
Cdd:MTH00041  100 LALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKIL 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 180 AYSSIAHMGWMAAIMVYNPTLMILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHTWNKSPLIASLILALMLSLGGLPPLSG 259
Cdd:MTH00041  180 AFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTG 259

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2028573570 260 FIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYATALTMFP 306
Cdd:MTH00041  260 FLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFP 306
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 20-344 5.94e-86

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 262.98  E-value: 5.94e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  20 VLFSSHWLMIWIGFEMNMLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTISMIPNPIASTVIT 99
Cdd:MTH00200   20 TFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLIL 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 100 IALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSINPNLLVAMAATSVLVGGWGGLNQTQLRKIL 179
Cdd:MTH00200  100 LALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKIL 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 180 AYSSIAHMGWMAAIMVYNPTLMILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHTWNKSPLIASLILALMLSLGGLPPLSG 259
Cdd:MTH00200  180 AYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTG 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 260 FIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFESMKKMIfLPPLIVASTMLLPL 339
Cdd:MTH00200  260 FFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLL-VGLLLLLSILGLPL 338


                  ....*
gi 2028573570 340 TPMLS 344
Cdd:MTH00200  339 TPQLL 343
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 20-320 2.97e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 180.85  E-value: 2.97e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  20 VLFSSHWLMIWIGFEMNMLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTISmipnpiasTVIT 99
Cdd:MTH00144   20 SLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 100 IALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSINP-NLLVAMAATSVLVGGWGGLNQTQLRKI 178
Cdd:MTH00144   92 LGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLNQTQVRAL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 179 LAYSSIAHMGWMAAIMVYNPTLMILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHTwNKSPLIASLILALMLSLGGLPPLS 258
Cdd:MTH00144  172 LAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSIISLLLSLGGLPPFL 250

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2028573570 259 GFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFESM 320
Cdd:MTH00144  251 GFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSI 312
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 20-346 1.82e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 173.86  E-value: 1.82e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  20 VLFSSHWLMIWIGFEMNMLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLhsghwtISMIPNPIASTVIT 99
Cdd:MTH00160   21 SISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------NLMLFNNISSMLIN 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 100 IALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQIspsINPNLLVAMAATSVLVGGWGGLNQTQLRKIL 179
Cdd:MTH00160   95 SSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIGAIGGLNQTSLRKIL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 180 AYSSIAHMGWMAAIMVYNPTLMILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHTWNKSPLIASLILALMLSLGGLPPLSG 259
Cdd:MTH00160  172 AYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLG 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 260 FIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYATALTMFpsaNNMKMKWQFESMKKMIFLPPLIVASTMLLPL 339
Cdd:MTH00160  252 FLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNY---NKNKWNLKKKKNKFSLILNFLSFISLFGLIL 328


                  ....*..
gi 2028573570 340 TPMLSIM 346
Cdd:MTH00160  329 SSLLFLL 335
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-299 2.33e-49

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 168.03  E-value: 2.33e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570   1 MKPPILIIITSTIILGTTIVLFSSHWLMIWIGFEMNMLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLh 80
Cdd:MTH00011    3 STFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWS- 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  81 sghwTISMIPNPIASTvITIALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSINPNLLVAMAAT 160
Cdd:MTH00011   82 ----FPSLLKNITALM-LLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 161 SVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHTWNKSPLI 240
Cdd:MTH00011  157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2028573570 241 ASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYA 299
Cdd:MTH00011  237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 21-336 9.75e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 145.20  E-value: 9.75e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  21 LFSSHWLMIWIGFEMNMLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTISMIPnpiastvITI 100
Cdd:MTH00197   15 LSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLSVVL-------VIL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 101 ALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPsiNPNLLVAMAATSVLVGGWGGLNQTQLRKILA 180
Cdd:MTH00197   88 GLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMNQSNIRQLLA 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 181 YSSIAHMGWMAAIMVYNPTLMILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHTWNKSPLIASLILALMLSLGGLPPLSGF 260
Cdd:MTH00197  166 YSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGF 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2028573570 261 IPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYATALTMFPSANNMKMKWQFESMKK--MIFLPPLIVASTML 336
Cdd:MTH00197  246 FLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFilLMMMLPLLMIFTMI 323
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 23-299 2.51e-33

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 128.31  E-value: 2.51e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  23 SSHWLMIWIGFEMNMLAI-IPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTISMIPNPIASTV---- 97
Cdd:COG1007   121 ANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAALAAGGansp 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  98 --------ITIALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSINPNL-------LVAMAATSV 162
Cdd:COG1007   201 llllglvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLaadwqllLAVLAVLSM 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 163 LVGGWGGLNQTQLRKILAYSSIAHMGWM-AAIMVYNP---TLMILNLTIYIMMTLGTF--MLFMYNLSTTTLSLSH---T 233
Cdd:COG1007   281 TVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPlgvSAALFYLLAYLFMNLGAFavILLLSRKGGEAEEIEDlagL 360

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2028573570 234 WNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYA 299
Cdd:COG1007   361 ARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 1.04e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 115.10  E-value: 1.04e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  23 SSHWLMIWIGFEMNMLAIIP-ILMKKFNPRAMEASTKYFLTQATASMLLMLGIII-----------NLLHSGHWTISMIP 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLmynytgtlsfdELSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  91 NPIASTVITIALAMKLGLSPFHFWVPEVTQGISLSSGMILL-TWQKIAPL-----SVLYQISPSINPNLLVAMAATSVLV 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 165 GGWGGLNQTQLRKILAYSSIAHMGWMAAIM----VYNPTLMILNLTIYIMMTLGTFMLFM-----YNLSTTTLSLSHTWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2028573570 236 KSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITA 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
22-296 2.48e-28

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 114.53  E-value: 2.48e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  22 FSSHWLMIWIGFEMNMLAI-IPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTISMIPNPIASTV--- 97
Cdd:PRK05777  121 SANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALADGSgns 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  98 ---------ITIALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAP----LSVLYQISPSINP---NLLVAMAATS 161
Cdd:PRK05777  201 llllfglvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfavlLRLLVVAFGGLSEdwqQVLAIIAIAS 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 162 VLVGGWGGLNQTQLRKILAYSSIAHMGWM------------AAIMVYnptlmilnLTIYIMMTLGTF----MLFMYNLST 225
Cdd:PRK05777  281 MLVGNLAALSQTNIKRLLAYSSIAHAGYLlvglaagtaegySAVLFY--------LLAYLFMTLGAFgvisLLRRKGGEA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2028573570 226 TTLS----LSHTwnkSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRL 296
Cdd:PRK05777  353 ESISdfagLSKR---SPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 23-344 3.14e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 111.26  E-value: 3.14e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  23 SSHWLMIWIGFEMNMLAI-IPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTI----SMIPNPIASTV 97
Cdd:MTH00199  116 SINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILTGDVGKIL 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  98 ITIALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSInpNLLVAMAATSVLVGGWGGLNQTQLRK 177
Cdd:MTH00199  196 ITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVT--NVVLICAVLSIIYGAIGALNQTKIKR 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 178 ILAYSSIAHMGW------------MAAIMVYnptlmilnLTIYIMMTLGTFMLFMYNLSTTTL--SLSHTWNKSPLIASL 243
Cdd:MTH00199  274 LLAYSGIGHMGFilfgvaigsfesIQASLIY--------MIIYVIMSICSFSIILSLKLTKGLivEVSGLSRKNPVIALT 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 244 ILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYataLTMFPSANNMkMKWQ--FESMK 321
Cdd:MTH00199  346 LALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ---IIYFQADYSI-LIWQkvLKKEE 421

                         330       340
                  ....*....|....*....|...
gi 2028573570 322 KMIFLPPLIVASTMLLPLTPMLS 344
Cdd:MTH00199  422 RLDLSKSILIGVTFFIILFLMIS 444
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 22-296 1.27e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 109.65  E-value: 1.27e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  22 FSSHWLMIWIGFEMNMLAI-IPILMKKFNPRAMEASTKYFLTQATASMLLMLGI-----------IINLLHSGHWTISMI 89
Cdd:TIGR01770 120 SSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGIsliygftgslnFEDLLLFLSNGMLNI 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  90 PNPIASTV-ITIALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSI-------NPNLLVAMAATS 161
Cdd:TIGR01770 200 SLLLLGIVlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIFLAIIAFLS 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 162 VLVGGWGGLNQTQLRKILAYSSIAHMGW-MAAIMVYNPTLM---ILNLTIYIMMTLGTFMLFMynlstTTLSLSHTWNKS 237
Cdd:TIGR01770 280 MLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIkavLFYIFIYALMSLGAFGVLS-----LLRSYKDEWIEY 354

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 238 -----------PLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRL 296
Cdd:TIGR01770 355 isdfaglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 20-296 1.66e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 107.81  E-value: 1.66e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  20 VLFSSHWLMIWIGFEMNMLAI-IPILMKKFNPRAMEASTKYFLTQATASMLLMLGI-------------IINLLHSGHWT 85
Cdd:MTH00196    9 LISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsYINLVLNSGQS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  86 ISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSInpNLLVAMAATSVLVG 165
Cdd:MTH00196   89 FSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNV--NILLIGGLFSLFVG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 166 GWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMI----LNLTIYIMMTLGTFM-LFMYNLSTTTL-SLSHTWNKSPL 239
Cdd:MTH00196  167 AIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIqaslVYLFIYIIMSICVFSiILALNVYKNLIiEFSGLSRRLPI 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2028573570 240 IASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRL 296
Cdd:MTH00196  247 LAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 20-296 5.12e-23

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 99.07  E-value: 5.12e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  20 VLFSSHWLMIWIGFEMNMLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWT-------ISMIPNP 92
Cdd:COG0651   123 AFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNmadlaarLAELDPG 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  93 IASTV---ITIALAMKLGLSPFHFWVPE-----------VTQGISLSSGM--ILLTWQKIAPLSVLYQISPsinpnLLVA 156
Cdd:COG0651   203 LLLAAfalLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGT-----LLLV 277

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 157 MAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM-AAIMVYNPTLMILNLTIYIMMTLGTFMLFM------YNLSTTTLS 229
Cdd:COG0651   278 LGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYIlLGLGLGTPLGLAGALFHLLNHALAKALLFLaagaieRATGTRDLD 357

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2028573570 230 -LSHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRL 296
Cdd:COG0651   358 kLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-296 4.50e-16

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 78.89  E-value: 4.50e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  51 RAMEASTKYFLTQATASMLLMLGI-IINLLHSGHWTISMIPNPIAST-------------VITIALAMKLGLSPFHFWVP 116
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGFsWLYGLSGGEIELQEIVNGLINTqmynspgisialiFITVGIGFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 117 EVTQGISLSSGMILLTWQKIAPLSVLYQISPSINP-------NLLVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMGW 189
Cdd:CHL00049  239 DVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYfssnewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 190 -MAAIMVYNP----TLMILNLTIYIMMTLGTFM-LFMYNLSTTTLSL---SHTWNKSPLIASLILALMLSLGGLPPLSGF 260
Cdd:CHL00049  319 vIIGIIVGDSndgyASMITYMLFYIFMNLGTFAcIVLFGLRTGTDNIrdyAGLYTKDPFLALSLALCLLSLGGIPPLAGF 398

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2028573570 261 IPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRL 296
Cdd:CHL00049  399 FGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
23-295 6.78e-16

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 78.55  E-value: 6.78e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  23 SSHWLMIWIGFEMnmLAIIPILMK---KFNPRAMEASTKYFLTQATASMLLMLGI-IINLLHSGHWTISMIPNPIA---S 95
Cdd:PRK02504  129 ATELVMIFISLET--LSIASYLLTgymKRDPRSNEAALKYLLIGAASSAIFLYGSsLLYGLSGGSTQLSAIALALItspS 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  96 TVITIAL-------AMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIA----PLSVLYQISPSINPN---LLVAMAATS 161
Cdd:PRK02504  207 LGLALALvfviagiAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEQwklLFTALAILS 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 162 VLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNP----TLMILNLTIYIMMTLGTFM-LFMYNLSTTTLSLSH---T 233
Cdd:PRK02504  287 MVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTeagyASMVFYLLAYLFMNLGAFAcVILFSLRTGTDQISDyagL 366

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2028573570 234 WNKSPLIaSLILAL-MLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMR 295
Cdd:PRK02504  367 YQKDPLL-TLGLSLcLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIR 428
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 23-267 8.69e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 75.28  E-value: 8.69e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  23 SSHWLMIWIGFEMNMLAIIPILMKKFNPRAM---------EASTKYFLTQATASMLLMLGIIINLLHSGH---------- 83
Cdd:MTH00198  207 SANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNegmlgtilsa 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  84 ----WTISMIPNPIASTVITIALAMKLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLyqISPSINPNLLVAMAA 159
Cdd:MTH00198  287 tletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITSKLLLSVAI 364

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 160 TSVLVGGWGGLNQTQLRKILAYSSIAHMGWMaAIMVYNPTLMILN-----LTIYIMMTLGTFMLFM-------------- 220
Cdd:MTH00198  365 ISLVVGAFGALNQTRIKRLLAYSGIGHIGFI-LIGVSAGTYESLQaswtyAVTYLVSALASFTVICtleefgtrtptsrq 443

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2028573570 221 -------YNLSTTTLSLSHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWMII 267
Cdd:MTH00198  444 rdgsfgnYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 49-299 2.33e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 67.60  E-value: 2.33e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  49 NPRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTISMIPNPIAST--------VITIALAMKLGLSPFHFWVPEV-T 119
Cdd:PRK08375  151 DRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAENptvvtafgFVLLALALKAAVFPLHTWLPRAyP 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 120 QGISLSSGMILLTWQKIAP------LSVLYQISPSINPNL---LVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM 190
Cdd:PRK08375  231 AAPPVVTALLSGLVTKVAVyaliriYFTVFGGDFRFALGLgwlLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYI 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 191 AAIMVYNPTLMILNLTIYIM----MTLGTFML---FMYNLSTTTLS-LSHTWNKSPLIASLILALMLSLGGLPPLSGFIP 262
Cdd:PRK08375  311 LLGLALLTPLALAAGLLHLLhhalMKGALFLAagaIEVTYGTRRLSeLSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVS 390

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 2028573570 263 KWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYA 299
Cdd:PRK08375  391 KWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYR 427
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 3.31e-12

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 60.73  E-value: 3.31e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2028573570 291 YFYMRLTYATALTMFPSANNMKMKWQFESMKKMIFLPPLIVASTMLLPLTP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 2.22e-11

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 64.58  E-value: 2.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  50 PRAMEASTKYFLTQATASmLLMLGIIINLLHSGHWTIS---MIPNPIASTV-------ITIALAMKLGLSPFHFWVPEV- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGS-LLMLLAILGLYFLGGGTFDlleLLNLPLPFGVqtwlflaFFIAFAVKVPLFPLHTWLPDAh 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 119 TQGISLSSGMILLTWQKIAPLSVLyQISPSINPN-------LLVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWMA 191
Cdd:TIGR01972 231 VEAPTAGSVILAGVLLKMGTYGFL-RFNLPLFPDaslyfapVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 192 -AIMVYNPTLMILNLTIYIMMTLGTFMLFMynLSTTTLSLSHT---------WNKSPLIASLILALMLSLGGLPPLSGFI 261
Cdd:TIGR01972 310 lGIFSFNELGISGAVFQMISHGLITAALFL--LVGVLYERAHTrdiakygglANKMPVLAAFFMLFAMASLGLPGTSGFV 387


                  ....*..
gi 2028573570 262 PKWMIIQ 268
Cdd:TIGR01972 388 GEFLILL 394
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 50-266 3.60e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 63.96  E-value: 3.60e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  50 PRAMEASTKYFLTQATASMLLMLGIII-----NLLHSGHWTISMIPNP-----IASTVITIALAMKLGLSPFHFWVPEvT 119
Cdd:PRK08376  168 WEAIEAGIKYMFVGSLASSMVLLGIALlygqyGTLNMAYLAVKMSENPtvvakIALALFIAGLAMKSGAVPVHMWLPD-A 246

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 120 QGISLSSGMILLTWQKIAPLSVLYQIS-----PSINPN----LLVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM 190
Cdd:PRK08376  247 YPAAPSSISAMLLVIKQAGLYALARVLfsiygPAINLAtvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYM 326

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 191 -----AAIMVYNPTLM--------------ILNLTIYIMMTLGTFMLFMYNLSTTTLS----LSHTWNKSpLIASLILAL 247
Cdd:PRK08376  327 llglgVGLAALGDPAMasygeialaggiyhIVNHALYKALLFLTAGAVIYETGTRNLNelggLARTMPKT-TIAFLIGAA 405

                         250
                  ....*....|....*....
gi 2028573570 248 MLSlgGLPPLSGFIPKWMI 266
Cdd:PRK08376  406 AIV--GLPPFNGFASKWLI 422
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 49-300 5.88e-11

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 63.63  E-value: 5.88e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  49 NPRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTIS----MIPNPIASTVITIALAM-------KLGLSPFHFWVPE 117
Cdd:COG1009   157 KPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSellaAAPTILSSPLLTLILLLlllgafgKSAQFPLHFWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 118 -----------------VTQGISLssgmilltwqkIAPLSVLYQISPSINPnLLVAMAATSVLVGGWGGLNQTQLRKILA 180
Cdd:COG1009   237 amegptpvsallhaatmVKAGVYL-----------LARLSPLFALSPVWLT-VVAIIGAITALFAALIALAQTDIKRVLA 304

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 181 YSSIAHMGWM-AAIMVYNPTLMILNLtiyimMTLGTFM--LFMynlstTTLSLSHT------------WNKSPLIASLIL 245
Cdd:COG1009   305 YSTVSQLGYMfLALGVGAYVAALFHL-----LTHAFFKalLFL-----GAGSVIHAtgtrdirkmgglRKKMPITAITFL 374

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2028573570 246 ALMLSLGGLPPLSGFIPKWMIIQELTKNDM--IVMPMFMAITALLNLYFYMRLTYAT 300
Cdd:COG1009   375 IGALSLAGIPPFAGFFSKEAILEAALEAGGlgPLLLAVALLGAFLTAFYSFRLFFLV 431
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 50-267 5.94e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 63.18  E-value: 5.94e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  50 PRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTISMIP---NPIASTV-------ITIALAMKLGLSPFHFWVPEVT 119
Cdd:COG1008   157 ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAElaaAPLPLTAqlllflaFFIAFAVKVPMFPFHTWLPDAH 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 120 QGISLSSGMIL---------------------LTWQKIAPLsvlyqispsinpnlLVAMAATSVLVGGWGGLNQTQLRKI 178
Cdd:COG1008   237 VEAPTAGSVLLagvllkmggygllrfalplfpEASAYFAPL--------------LAALGVIGIIYGALVALAQTDLKRL 302

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 179 LAYSSIAHMGWM-AAIMVYNPtlMILNLTIYIM-----MTLGTFML--FMYN-LSTTTLS-LSHTWNKSPLIASLILALM 248
Cdd:COG1008   303 IAYSSVSHMGFVlLGIFALNP--LGLQGAVLQMvshglITAALFLLvgVLYDrTHTRDIAdLGGLAKRMPVLAALFLLAA 380

                         250
                  ....*....|....*....
gi 2028573570 249 LSLGGLPPLSGFIPKWMII 267
Cdd:COG1008   381 LASLGLPGTSGFVGEFLVL 399
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 50-298 7.98e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 63.07  E-value: 7.98e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  50 PRAMEASTKYFLTQATASMLLMLGIIInlLHSGHWTISM------------------IPNPIASTVITIALAM-----KL 106
Cdd:PRK12667  160 GDAVEAAIKYALIGAVGTTLYFLALAF--LYATFGTLNMadlsakirglsfpltgglAGNPPLALGVALALALwaftiKA 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 107 GLSPFHFWVPEV-----------TQGISLSSGMILLtwqkIAPLSVLYQISPSINP------NLLVAMAATSVLVGGWGG 169
Cdd:PRK12667  238 AIFPNHFWLPDAhpaapspvsamLSGLVVNVGAYAI----IRFLYTIFGISPSLIDfraalsPILIILGAVSAIIGALMM 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 170 LNQTQLRKILAYSSIAHMGWMAaIMVYNPTLMILNLTIYIMM--TLGTFMLFM-------YNLSTTTLSLSHTWNKSPLI 240
Cdd:PRK12667  314 VVQKDVKRLLAYSTISHMGYIF-MGIGIGTQLGLAAALFHIInhAIAKSLLFLasgvfihAAGTRDIDELAGLGRKMPIA 392

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028573570 241 ASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTY 298
Cdd:PRK12667  393 SFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWY 450
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
53-296 4.53e-10

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 60.73  E-value: 4.53e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  53 MEASTKYFLTQATASMLLMLGIiiNLLHSGHWTISMI-------------PNPIASTVITIALAMKLGLSPFhFWVPEV- 118
Cdd:PRK12663  157 LRGAIKYVVLNLIGSWLFLLGI--GLLYGTFGTLNMAhiamrlndmgdtaTLTTIALLFLLAFGMKAALFPF-MWLPAAy 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 119 -TQGISLSSGMI-LLTWQKIAPL----SVLYQISPSINPNLLVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM-A 191
Cdd:PRK12663  234 hTPNTEVAALFAaLLTKVGIYALirvfTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFIlL 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 192 AIMVYNPTLMilNLTIYIM---MTLGTFMLF-----MYNLSTTTLS-LSHTWNKSPLIASLILALMLSLGGLPPLSGFIP 262
Cdd:PRK12663  314 GLALGTPAGI--NGAIFYLvhdMVVKTALFLiagslVRLTGYRSLQyLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWG 391

                         250       260       270
                  ....*....|....*....|....*....|....
gi 2028573570 263 KWMIIQELTKNDMIVMPMFMAITALLNLYFYMRL 296
Cdd:PRK12663  392 KVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 52-263 8.26e-10

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 60.32  E-value: 8.26e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  52 AMEAstkyfLTQATASMLLML-GIIINLLHSGHWTISMIP-NPIASTVITIALAM-------KLGLSPFHFWVPE----- 117
Cdd:PRK12644  159 ALQA-----LLVTTAGGLAMLvGIIILGQAAGTYRLSELLaDPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGamaap 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 118 ------------VTQGISLssgmilltwqkIAPLSVLYQISPSINPNLLVAMAATsVLVGGWGGLNQTQLRKILAYSSIA 185
Cdd:PRK12644  234 tpvsaylhaaamVKAGIYL-----------VARLAPGFADVPVWRPTVLVLGLAT-MLLGGWRALRQHDLKLILAYGTVS 301

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 186 HMGWMAAIMVY-NPTLMILNLTiyimMTLGTFM----LFMY----NLSTTTLS---LSHTWNKSPLIASLILALMLSLGG 253
Cdd:PRK12644  302 QLGFLTVLVGIgTRDAALAGLA----MLLAHALfkaaLFLVvgiiDHSTGTRDirkLSGLGRRQPVLAVVAALAAASMAG 377

                         250
                  ....*....|
gi 2028573570 254 LPPLSGFIPK 263
Cdd:PRK12644  378 LPPLLGFVAK 387
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 20-307 2.76e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 55.39  E-value: 2.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  20 VLFSSHWLMIWIGFEMNMLA--IIPILMKKFNpraMEASTKYFLTQATASMLLMLGIIINLLHSGHWTISMIPNP----- 92
Cdd:PRK08668  114 VFLANDLLTLYIFWEIMTFSsfMMVPMGKKES---RKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGlindt 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  93 ------IASTVITIALAMKLGLSPFHFWVPEV--------------------TQGISLSSGMILLTwqKIAPLSVLYQIS 146
Cdd:PRK08668  191 stgfalIVFLFLLAFGVAKAGIFPLHVWAPDAyseapqsfsavlsgqlsklgAYGFLLVLYVLPGT--KLFSEFGTYRGV 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 147 PSINpNLLVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMGW-MAAIMVYNPT------LMILNLTIYIMMTLGTFMLF 219
Cdd:PRK08668  269 PLFN-YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYiLVGLGLGTSLgfagglFHVFNHALFKGLFFLIFAAV 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 220 MYNLSTTTLS----LSHtwnKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMR 295
Cdd:PRK08668  348 IYRTGTTKISemggLIE---KMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFR 424

                         330
                  ....*....|..
gi 2028573570 296 LTYATALTMFPS 307
Cdd:PRK08668  425 PLAGVFLGQLPS 436
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 98-330 3.51e-08

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 54.93  E-value: 3.51e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  98 ITIALAMKLGLSPFHFWVP----EVTQGISLSSGMILLTWQKIAPLSVLYQISPSINPNL---LVAMAATSVLVGGWGGL 170
Cdd:MTH00226  236 IFLAMAVKIPIFPFHIWLPkahvEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQNLapaVIAMGIVGIVYGSFATC 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 171 NQTQLRKILAYSSIAHMGwMAAIMVYNPTLMILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHTW---------NKSPLIA 241
Cdd:MTH00226  316 RQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRlikyyrglsITMPIWG 394

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 242 SLILALMLSLGGLPPLSGFIPKWM-IIQELTKNDMI--VMPMFMAITALLNLYFYMRLTYATALTMFPSANNMKMKwQFE 318
Cdd:MTH00226  395 TIMIVTSLANVAVPPSGNFIGEYLsILSSFNWNPIIgvFVCSGVILSAVYSFYFANRVTFGAPGNLITFARDVNRR-EFY 473

                         250
                  ....*....|..
gi 2028573570 319 SMKKMIFLPPLI 330
Cdd:MTH00226  474 ITASMVFFAFLI 485
PRK12650 PRK12650
DUF4040 family protein;
78-263 2.40e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 52.35  E-value: 2.40e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  78 LLHSGHWTismiPNPIASTVITIALAM----KLGLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQISPSINPN- 152
Cdd:PRK12650  194 ILHSDVWA----EKPGLTTVVAVLIAVaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVa 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 153 ----LLVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM-AAIMVYNPtlmiLNLTIYIMMTLGTFM----LFM--- 220
Cdd:PRK12650  270 vwnwLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTP----FALTAAVVHTLAHALfkssLFMlig 345

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2028573570 221 ---YNLSTTTLS-LSHTWNKSPLIASLILALMLSLGGLPPLSGFIPK 263
Cdd:PRK12650  346 vvdHQAGTRDIRrLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
29-302 1.85e-06

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 49.26  E-value: 1.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  29 IWIGFEMNMLAIIPILMKKFNPRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTIS----MIPNPIASTVITIALAM 104
Cdd:PRK06277  125 LYVFFEIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITdihnALLVNPTSPVIYGGLLL 204

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 105 KL-------GLSPFHFWVPEVTQGISLSSGMILLTWQKIAPLSVLYQI-----SPSINPNLLVAMAATSVLVGGWG---G 169
Cdd:PRK06277  205 LIfgllygsGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIfklfgGLSYFPSAQGVLIALSVLAMVFGvvmA 284

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 170 LNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMI-------LNLTIYI-MMTLGTFMLFMYNLSTTTLSLSHTWNKSPLIA 241
Cdd:PRK06277  285 LLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYKsALFLGAGIVSYRTKTSNLRKLGGLLPVMPVVA 364

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2028573570 242 SLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYATAL 302
Cdd:PRK06277  365 FMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFYLIYL 425
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-342 1.86e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 49.35  E-value: 1.86e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 152 NLLVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMILNLTIYIM-MTLGTFMLFM------YNLS 224
Cdd:PRK12662  280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnHSIVKSALFMvsgsisYHFG 359

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 225 TTTLS-LSHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRLTYATALT 303
Cdd:PRK12662  360 TTKLEdCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKIVEALYFE 439

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2028573570 304 MfPSANNMKMKWQFESMKKMIFLPPLIVASTMLLPLTPM 342
Cdd:PRK12662  440 S-RMVESKANDKAFKTPNAMVLCIWIMAILSIIVGIYPI 477
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 52-332 1.97e-05

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 46.30  E-value: 1.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  52 AMEASTKYFLTQATASMLLMLGI--------IINLLHSGHWTISMIPN--PIASTVITIALAMKLGLSPFHFWVPEVTQG 121
Cdd:PRK08377  156 AAEASMKYIVLGGIGSSFFLIGValiygatgTLNMAHIAQLAGTIDPTvaQVGLALLIFGLAVEAELFPLNAWAPDAYQA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 122 ------ISLSSGMILLTWQKIAPLSVLYQISPSINP--NLLVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAI 193
Cdd:PRK08377  236 aphpitVMFSAFVVKAGLYAMARILYLMQNANGWSSvlKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 194 MVYNPTL--------MILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWM 265
Cdd:PRK08377  316 LALGTQAgvdagvfhMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFR 395

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2028573570 266 IIQELTKNDMIVMPMFMAITALLNLYFYMRLTYatalTMFPSANNMKMKWQFESMKKMIFLPPLIVA 332
Cdd:PRK08377  396 IILAGLSAGYTWPVALVLGASVVEAVYYFRLIH----TMWFKGEGERIRENAAIGIILLLLAALIVV 458
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 100-296 4.29e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 44.94  E-value: 4.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 100 IALAMKLGLSPFHFWVPEVTQG-----ISLSSGmiLLT----WQKIAPLSVLYQISPSINPNLLVAMAATSVLVGGWGGL 170
Cdd:PRK07691  217 FVFATKAGLFPLYFWLPGSYYAppiaiAALFGA--LLTkvgvYAIARTFTLFFSHDTSFTHYLILILALLTIIFGVIGAV 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 171 NQTQLRKILAYSSIAHMGWM-AAIMVYNPTLMI--LNLTIYIMMTLGTFMLF---MYNLSTTTL--SLSHTWNKSPLIAS 242
Cdd:PRK07691  295 AYFDIKKIIIYNIMIAVGVIlVGVAMMTESGMIgaIYYLIHDMIVKAALFLLigiMIKITGTTDlkKMGGLIKRYPVLGW 374

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2028573570 243 LILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAITALLNLYFYMRL 296
Cdd:PRK07691  375 MFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-268 1.43e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 43.42  E-value: 1.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 152 NLLVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM------------AAIMVYnptlMILNLTIYIMMTLGTFMLF 219
Cdd:PRK12665  274 TLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMvfgialstvaglSGAIYY----VAHHITVQTTLFLVVGLIE 349

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2028573570 220 MYNLSTTTLSLSHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQ 268
Cdd:PRK12665  350 RQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 55-267 1.83e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 43.27  E-value: 1.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  55 ASTKYFLTQATASMLLMLGII----INLLHSGHWTISMIPN-PIASTVIT-------IALAMKLGLSPFHFWVPEV---- 118
Cdd:PRK05846  162 AATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIADLLNlPLPPGVQYwlflaffIAFAVKMPMFPLHTWLPDAhvqa 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 119 -TQGISLSSGMILltwqKIAP---LSVLYQISPSINPN---LLVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWMA 191
Cdd:PRK05846  242 pTAGSVLLAGILL----KMGAyglLRFSLPLFPDASHEfapIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVT 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 192 aimvynptlmilnLTIYIMMTLG----TFMLFMYNLSTTTLSLS--------HT---------WNKSPLIASLILALMLS 250
Cdd:PRK05846  318 -------------LGIFAGNQLGiqgaIFQMISHGLSSAALFLLvgvlydrlHTrdiadygglAKVMPVLAAFFLFFAMA 384

                         250
                  ....*....|....*..
gi 2028573570 251 LGGLPPLSGFIPKWMII 267
Cdd:PRK05846  385 SLGLPGTSGFVGEFLIL 401
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-288 4.89e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.94  E-value: 4.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  55 ASTKYFLTQATASMLLMLGIIINLLHSGHWTISMIPNPIASTVIT----------IALAMKLGLSPFHFWVP----EVTQ 120
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTFTFDLAELGAKSYPLAlelllyagflIAFGVKLPIFPLHTWLPdahgEASA 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 121 GISLSSGMILLTWQKIAPLSVLYQISPSINPNLLVAMAATSVLVGGWGGLN---QTQLRKILAYSSIAHMGWMaAIMVYN 197
Cdd:PRK12561  218 PVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPALAILGVVNIIYGALNafaQDNVKRRLAYSSVSHMGFV-LLGIAA 296

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 198 PTLMILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHTWN---------KSPLIASLILALMLSLGGLPPLSGFIPKWMIIQ 268
Cdd:PRK12561  297 FTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSipnmgglakVMPKTFALFTASSMASLALPGMSGFVSELTVFL 376

                         250       260
                  ....*....|....*....|
gi 2028573570 269 ELTKNDmIVMPMFMAITALL 288
Cdd:PRK12561  377 GITSSD-VYSSTFRTITILL 395
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
98-190 9.91e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 40.84  E-value: 9.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  98 ITIALAMKLGLSPFHFWVP----EVTQGISLSSGMILL-----------------TWQKIAPlsvlyqispsinpnLLVA 156
Cdd:PRK06473  211 ILVGFGIKIPLVPFHTWLPdahvEASTPVSVLLAGVLLklgtygllrfgvglfpeAWVYLAP--------------WLAT 276

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2028573570 157 MAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM 190
Cdd:PRK06473  277 WAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-270 2.05e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.10  E-value: 2.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  59 YFLTQATASMLLMLGIIINLLHSGHWTISMI--PNPIASTVIT---IALAMKLGLSPFHFWVPEVTQGI-----SLSSGM 128
Cdd:PRK08667  167 YFVMTQLSTVFLMLGIIVLFIQTGSFELSPLgaSAGILSLVFLllfLGFGIKAGIIPFHKWLPYAHPASpsnvsALMSGV 246

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 129 ILltwqKIAPLSVLYQISPSINPNL-----LVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMG-WMAAIMVY------ 196
Cdd:PRK08667  247 ML----KVAVYGLVRFLMDVLSPELwwgvlILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiILMGIGLYvifgvy 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 197 -NPTLMILNLTIYIMMTL--GTFMLFMYNLSTTTLSLSHTWN---------KSPLIASLILALMLSLGGLPPLSGFIPKW 264
Cdd:PRK08667  323 gLDTLALLALGGALFHSLnhALFKSLLFLTAGSVVHATGTRNiekmgglvkLMPYTSALFLVGAVSIAALPPFNGFASEL 402


                  ....*.
gi 2028573570 265 MIIQEL 270
Cdd:PRK08667  403 LLYESF 408
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 22-284 2.94e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 39.41  E-value: 2.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  22 FSSHWLMIWIGFEMNMLAIIPILMKKFNPRAMEASTKYFLTQATASMLLML---GIIINLLHSGHWTISMI---PNPIAS 95
Cdd:PRK06589  134 LSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLpavILIYTKTGNLDFVSGGLfskNQSIIL 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  96 TVITIALAMKLGLSPFHFWVPE-----------------VTQGISLSSGMILLTWqKIAPLSVLYQISpsinpNLLVAMA 158
Cdd:PRK06589  214 LLMFIYGIAKTAIFPVHSWLPAamvahypvsallhavivVKTGLFCIYKILLYIF-GLSYLQRIFAEF-----NWLIFIP 287

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 159 ATSVLVGGWGGLNQTQLRKILAYSSIAHMGW--MAAIMVYNPTLMILNLTIyIMMTLGTFMLFMYNLSTTTLS------- 229
Cdd:PRK06589  288 IVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHL-VSHSFAKICLFYSMGSIYSLKkedqvdk 366

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2028573570 230 LSHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTKNDMIVMPMFMAI 284
Cdd:PRK06589  367 LHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVML 421
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
50-268 3.32e-03

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 39.11  E-value: 3.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  50 PRAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTIS--MIPNPIASTVITIALAMKLGLSPFHFWVPE------VTQG 121
Cdd:PRK12668  139 KAAVRAGFRYLLVHVLGGVLLLAGILLHYAETGSFAFGaiAGLGGTAAWLILIGFGVNAAFPPLHAWLPDaypeatVTGS 218

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 122 ISLSSgmilLTwQKIApLSVLYQISPSINpnLLVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM-AAIMVynPTL 200
Cdd:PRK12668  219 VFLSA----FT-TKTA-VYALARAFPGTE--LLIYIGAAMAVYGVFFALLENDLRRLLSYHIVSQVGYMvAGIGI--GTA 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 201 MILNltiyimmtlGTF-----------MLFM------YNLSTTTLS-LSHTWNKSPLIASLILALMLSLGGLPPLSGFIP 262
Cdd:PRK12668  289 LAIN---------GAVahafnhilykgLLFMsagavlYRTGTEKLTeLGGLYRSMPLTALFCLVGALSISAFPLFSGFVS 359


                  ....*.
gi 2028573570 263 KWMIIQ 268
Cdd:PRK12668  360 KSMIIS 365
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 49-291 3.69e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 38.98  E-value: 3.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  49 NPRAMEASTKYFLTQATASMLLMLGIIINLlHSGHWTI-SMIPNPIASTV---ITIALAMKLGLSPFHFWVPEVTQGISL 124
Cdd:MTH00207  133 NPKSLGAGMITALTNRIGDVMLLLSIGWTL-NQGHWSItNMWQTDMNNYIalsIMIAAMTKSAQMPFSSWLPAAMAAPTP 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 125 SSGMILLTWQKIAPLSVLYQISPSINP-----NLLVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMG-WMAAIMVYNP 198
Cdd:MTH00207  212 VSALVHSSTLVTAGVFLLIRFYPFLSStywfnPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGvMMASLGLGMP 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 199 TLMILNLTIYIMMTLGTF-----MLFMYNLSTTTLSLSHTWNKSPLIASLILALMLSLGGLPPLSGFIPKWMIIQE--LT 271
Cdd:MTH00207  292 KLALFHLITHALFKALLFvcagsLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESslFY 371

                         250       260
                  ....*....|....*....|
gi 2028573570 272 KNDMIVMPMFMAITALLNLY 291
Cdd:MTH00207  372 PHNSLMILMIFLATALTAAY 391
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 51-278 4.56e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 38.78  E-value: 4.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  51 RAMEASTKYFLTQATASMLLMLGIIINLLHSGHWTISMIPN--PIASTVITIALAMKLGLSPFHFWVPEVTQGISLSSGM 128
Cdd:PRK07234  141 RAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSA 220

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 129 IL---LTWQKIAPLSVLYQISPSINPnLLVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWMAAIMVYNPTLMIlnl 205
Cdd:PRK07234  221 LLsgvVVKAGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVGGLYAL--- 296

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2028573570 206 tiyimmTLGTFMLFMYNLSTTTLSLSHTWNKSPLIA-----SLILAlMLSLGGLPPLSGFIPKWMIIQELTKNDMIVM 278
Cdd:PRK07234  297 ------AHGLVKSTLFLCAGALPSRNFTELISQMLGigkwiPLTMA-SFSIAGFPLLAGFVSKVLTLKNLLPWQAIAL 367
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 21-190 5.46e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 38.58  E-value: 5.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  21 LFSSHWLMIWIGFEMNML---AIIPILMKKFNpraMEASTKYFLTQATASMLLMLGIII------NLLHSG--HWTISMI 89
Cdd:PRK08676  119 FFSDNLALFWIFAELTTVfsaMLIAILSAREN---IDAALKYIFIASTAMIFAFIGLIFlfsltrQALGTGtlNWTELAA 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  90 PNP--------IASTVITIALAMKLGLSPFHFWVPEV-TQGISLSSGMILLTWQKIAPLSVLY--------QISPSINpN 152
Cdd:PRK08676  196 HASllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRlsallrqsGAAEQFS-N 274

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2028573570 153 LLVAMAATSVLVGGWGGLNQTQLRKILAYSSIAHMGWM 190
Cdd:PRK08676  275 VLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLM 312
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 20-270 5.80e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 38.62  E-value: 5.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  20 VLFSSHWLMIWIGFE-MNMLAIIPILMKKFNPRAmeasTKYFLTQATASMLLML-GIIINLLHSGHWTISMIPNPIASTV 97
Cdd:PRK06459   88 VLTSDNYLLFLAGWEiMTIPSYVAIALTKKNKRP----AFVFMAFGELSTVLILaGFAWAFIISGTTNFSYLPSPVPLIL 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570  98 ITIALAMKLGLSPFHF--WVPEV------TQGISLSSGMILLTWQKIAPLSVLYQISPSINPNL-LVAMAATSVLVGGWG 168
Cdd:PRK06459  164 ASFGFIIKMGMMPFLVseWLPIAhgnapsNFSAILSATMTLMGVYGILKMTILTQTIPIGYFGLtILAIGAFSILFGALY 243

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 169 GLNQTQLRKILAYSSIAHMGWMAA-----IMVYNPTLMI-----LNLTIYIMM-TLGTFMLFMYNLSTTTLSLSHTWNKS 237
Cdd:PRK06459  244 AYVSENVKGLLAFSTIENNGAILValglyMVTKQLITSIehfslITVILYSFAhSVAKTGLFLSSGLQEKQSITYSKKIR 323

                         250       260       270
                  ....*....|....*....|....*....|....
gi 2028573570 238 PLIASLILALM-LSLGGLPPLSGFIPKWMIIQEL 270
Cdd:PRK06459  324 NRWIELGLTLLaSSLSGLLPNIGGVASWLLLESL 357
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 107-272 7.45e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 38.27  E-value: 7.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 107 GLSPFHFWVPEVTQGISLSSGMILLT------WQKIAPLSVLYQISPSINPNLLVAMAATSVLVGGWGGLNQTQLRKILA 180
Cdd:PRK08042  195 GIIPLHGWVPQAHANASAPAAALFSTvvmkigLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGLYALMEHNIQRLLA 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 181 YSSIAHMG--------WMAAIMVYNPTLMILNLTiyimmtLGTFMLFMYNLSTTTLSLS--HTW---------------N 235
Cdd:PRK08042  275 YHTLENIGiillglgaGVTGIALEQPALIALGLV------GGLYHLLNHSLFKSVLFLGagSVWfrtghrdieklggigK 348

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2028573570 236 KSPLIASLILALMLSLGGLPPLSGFIPKWMIIQELTK 272
Cdd:PRK08042  349 KMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 100-261 8.22e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 38.11  E-value: 8.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 100 IALAMKLGLSPFHFWVPE-----------VTQGISLS---SGMILLTWqkiaPLsvLYQISPSINPnLLVAMAATSVLVG 165
Cdd:MTH00217  214 LSLAIKIPKIPFHIWLPQahveapvagsvILAGVLLKlggYGFIRFSW----PL--LPEASEYFSP-LIQTLSLLAIIYG 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028573570 166 GWGGLNQTQLRKILAYSSIAHMGwMAAIMVYNPTLMILNLTIYIMMTLGTFMLFMYNLSTTTLSLSHT---------WNK 236
Cdd:MTH00217  287 SLTTCRQVDLKRIIAYSSVAHMG-LVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTrlikyyrgmVIT 365

                         170       180
                  ....*....|....*....|....*
gi 2028573570 237 SPLIASLILALMLSLGGLPPLSGFI 261
Cdd:MTH00217  366 MPLFGILMLLLVLANASIPLSCNFV 390
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH