NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2054262399|gb|QWT71643|]
View 

NADH dehydrogenase subunit 3 (mitochondrion) [Saussurella borneensis]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 5-115 2.88e-33

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 111.79  E-value: 2.88e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   5 MTLMMISATIAIVMIILASALSKKVVTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIAKIS 84
Cdd:MTH00161    3 LIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTS 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2054262399  85 SIKMWWILSSSFIMILIVGLFYEWKQGALKW 115
Cdd:MTH00161   83 NMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 5-115 2.88e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 111.79  E-value: 2.88e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   5 MTLMMISATIAIVMIILASALSKKVVTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIAKIS 84
Cdd:MTH00161    3 LIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTS 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2054262399  85 SIKMWWILSSSFIMILIVGLFYEWKQGALKW 115
Cdd:MTH00161   83 NMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 2.44e-22

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 83.63  E-value: 2.44e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399  19 IILASALSKKVvTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIAKISSIkMWWILSSSFIM 98
Cdd:pfam00507   1 LLLSRLLGPKR-PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGW-FGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2054262399  99 ILIVGLFYEWKQGALK 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 7-115 1.12e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 82.48  E-value: 1.12e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   7 LMMISATIAIVMIILASALSKKVvTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIAK-ISS 85
Cdd:COG0838    11 FLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFReLGW 89

                          90       100       110
                  ....*....|....*....|....*....|
gi 2054262399  86 IKMWWILssSFIMILIVGLFYEWKQGALKW 115
Cdd:COG0838    90 FGLIEML--VFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 5-115 2.88e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 111.79  E-value: 2.88e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   5 MTLMMISATIAIVMIILASALSKKVVTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIAKIS 84
Cdd:MTH00161    3 LIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTS 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2054262399  85 SIKMWWILSSSFIMILIVGLFYEWKQGALKW 115
Cdd:MTH00161   83 NMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 2.01e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 104.94  E-value: 2.01e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   1 MWNTMTLMMISATIAIVMIILASALSKKVVTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPI 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2054262399  81 AKISSIKMWWILSSSFIMILIVGLFYEWKQGALKWAS 117
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 9.71e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 103.15  E-value: 9.71e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   1 MWNTMTLMMISATIAIVMIILASALSKKVVTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPI 80
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2054262399  81 AKISSIKMWWILSSSFIMILIVGLFYEWKQGALKWA 116
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-117 2.91e-26

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 94.15  E-value: 2.91e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   1 MWNTMTLMMISATIAIVMIILASALSKKVVTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPI 80
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2054262399  81 AKISSIKMWWILSSSFIMILIVGLFYEWKQGALKWAS 117
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWSS 117
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 3-116 6.77e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 93.02  E-value: 6.77e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   3 NTMTLMMISATIAIVMIILASALSKkVVTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIAK 82
Cdd:MTH00113    2 NLISMLTISLALSTILTTLNFWLTQ-TKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2054262399  83 ISSIKMWWILSSSFIMILIVGLFYEWKQGALKWA 116
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 2.39e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 91.90  E-value: 2.39e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   1 MWNTMTLMMISATIAIVMIILASALSKkVVTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPI 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQ-MTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWG 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2054262399  81 AKISSIKMWWILSSSFIMILIVGLFYEWKQGALKWA 116
Cdd:MTH00136   80 DQLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWA 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 5.01e-25

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 91.20  E-value: 5.01e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   1 MWNTMTLMMISATIAIVMIILASALSKKVvTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPI 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRS-PDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2054262399  81 AKISSIKMWWILSSSFIMILIVGLFYEWKQGALKWA 116
Cdd:MTH00042   80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWA 115
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 4-116 4.48e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 88.51  E-value: 4.48e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   4 TMTLMMISATIAIVMIILASALSKkVVTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIAKI 83
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPL-NNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQL 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2054262399  84 SSIKMWWILSSSFIMILIVGLFYEWKQGALKWA 116
Cdd:MTH00069   81 NTPTNTLFWSTLILILLTLGLIYEWIQGGLEWA 113
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 3-116 3.01e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 86.53  E-value: 3.01e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   3 NTMTLMMISATIAIVMIILASALSKkVVTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIAK 82
Cdd:MTH00106    2 NLMLTLLTNTLLASLLVLIAFWLPQ-LNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2054262399  83 ISSIKMWWILSSSFIMILIVGLFYEWKQGALKWA 116
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWT 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 2.44e-22

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 83.63  E-value: 2.44e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399  19 IILASALSKKVvTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIAKISSIkMWWILSSSFIM 98
Cdd:pfam00507   1 LLLSRLLGPKR-PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGW-FGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2054262399  99 ILIVGLFYEWKQGALK 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 7-115 1.12e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 82.48  E-value: 1.12e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   7 LMMISATIAIVMIILASALSKKVvTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIAK-ISS 85
Cdd:COG0838    11 FLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFReLGW 89

                          90       100       110
                  ....*....|....*....|....*....|
gi 2054262399  86 IKMWWILssSFIMILIVGLFYEWKQGALKW 115
Cdd:COG0838    90 FGLIEML--VFIAILLVGLIYAWKKGALEW 117
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 5-115 8.18e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 80.33  E-value: 8.18e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   5 MTLMMISATIAIVMIILASALSK---KVVTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIA 81
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFwlpKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2054262399  82 KISSIKMWWIlsSSFIMILIVGLFYEWKQGALKW 115
Cdd:MTH00203   81 QLSSLSLLLA--FLFLILLTLGLIYEWLQGGLEW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 8-116 9.69e-20

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 77.60  E-value: 9.69e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   8 MMISATIAIVMIILASALSKKVvTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIAKISSIK 87
Cdd:PRK06602   15 LIVAIGLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWL 93

                          90       100
                  ....*....|....*....|....*....
gi 2054262399  88 MWWILsSSFIMILIVGLFYEWKQGALKWA 116
Cdd:PRK06602   94 GFVEA-MIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 3-115 4.20e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 73.17  E-value: 4.20e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   3 NTMTLMMISATIAIVMIILASALSKKVvTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIAK 82
Cdd:MTH00018    2 GLFILLIFSVVLSALFSGASYFLGVKQ-PDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYN 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2054262399  83 ISSIKMWWILsSSFIMILIVGLFYEWKQGALKW 115
Cdd:MTH00018   81 QIAPFGFWTM-VGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-115 5.61e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 70.51  E-value: 5.61e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   1 MWNTMTLMMISATIAIVmIILASALSKKVVTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPI 80
Cdd:MTH00055    5 FLGIFILLLFSIGLSTV-ISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVV 83

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2054262399  81 AKISSIKMWWILsSSFIMILIVGLFYEWKQGALKW 115
Cdd:MTH00055   84 YNQIGLFGFWVM-YLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 32-115 1.85e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 61.87  E-value: 1.85e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399  32 DREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIAKISSIKMWWILsSSFIMILIVGLFYEWKQG 111
Cdd:MTH00030   40 DSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIV-YTFLIVLAIGLAYEWIKG 118


                  ....
gi 2054262399 112 ALKW 115
Cdd:MTH00030  119 GLEW 122
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
7-117 1.96e-10

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 53.90  E-value: 1.96e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   7 LMMISATIAIVMI-ILASALSKKVV---TDREKSSPFECGFDPKSSPRlPFSIQFFLISMLFLIFDVEIALILPIIPIAK 82
Cdd:PRK08489   15 VLLVLTFVAFFLTtRLARFISRKLAqknTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFK 93

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2054262399  83 ISSIkMWWILSSSFIMILIVGLFYEWKQGALKWAS 117
Cdd:PRK08489   94 LLGL-FGLIEMLLFIVLLTIGFIYAWKKGALEWQS 127
ndhC CHL00022
NADH dehydrogenase subunit 3
 14-115 1.19e-09

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 51.91  E-value: 1.19e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399  14 IAIVMIILASALSKKVVTDR---EKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIAKISSIKMWw 90
Cdd:CHL00022   16 ISSLIPILAFLISGLLAPISkgpEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAF- 94

                          90       100
                  ....*....|....*....|....*
gi 2054262399  91 ILSSSFIMILIVGLFYEWKQGALKW 115
Cdd:CHL00022   95 IEALIFVLILIVGLVYAWRKGALEW 119
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 7-115 3.97e-07

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 45.05  E-value: 3.97e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   7 LMMISATIAIVMIILASALSKKVVtDREKSSPFECGFDPKSSPRLP--FSIQFFLISMLFLIFDVEialilpiipiakIS 84
Cdd:PRK07928   10 LGALAAAFAVVSVVVASLVGPKRY-NRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIE------------IV 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2054262399  85 SIKMWWILSSS-----------FIMILIVGLFYEWKQGALKW 115
Cdd:PRK07928   77 FLYPWAVSFDAlgvfglvemalFMLTVFVAYAYVWRRGGLEW 118
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
30-115 2.27e-06

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 43.19  E-value: 2.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399  30 VTDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPIAK----ISSIKMWwilssSFIMILIVGLF 105
Cdd:PRK07756   37 KPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDklglFALIEML-----IFVVMLLVGLA 111

                          90
                  ....*....|
gi 2054262399 106 YEWKQGALKW 115
Cdd:PRK07756  112 YAWKKKVLQW 121
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 4.12e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 34.10  E-value: 4.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262399   1 MWNTMTLMMISATIAIVMIILASALSKKVVtDREKSSPFECGFDPKSSPRLPFSIQFFLISMLFLIFDVEIALILPIIPI 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKF-DLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2054262399  81 AKISSIKMWwilsssFIMILIVGLFY-EWKQGALKW 115
Cdd:MTH00092   80 DFSSLISFF------MLMIFIFFGFYmEWWYGKLIW 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH