NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2054262403|gb|QWT71647|]
View 

NADH dehydrogenase subunit 6 (mitochondrion) [Saussurella borneensis]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-166 7.01e-28

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 101.42  E-value: 7.01e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262403   1 MKTLYMLSMMMNSMFTTTKQPMIMVMIILTQTIIIAIKTGMESESFWFSYMLVIIFIGGMMVMFIYITSITPNEMNSTNL 80
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262403  81 MLTLTSMLLFSAIALITMMKTNHMSNLETNTMSIEMISneystiLKPLFNEPMNKISLMMMIYLFIAMIAVTKITDLKSG 160
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFS------LSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKG 154


                  ....*.
gi 2054262403 161 PLRKKN 166
Cdd:MTH00166  155 PLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-166 7.01e-28

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 101.42  E-value: 7.01e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262403   1 MKTLYMLSMMMNSMFTTTKQPMIMVMIILTQTIIIAIKTGMESESFWFSYMLVIIFIGGMMVMFIYITSITPNEMNSTNL 80
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262403  81 MLTLTSMLLFSAIALITMMKTNHMSNLETNTMSIEMISneystiLKPLFNEPMNKISLMMMIYLFIAMIAVTKITDLKSG 160
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFS------LSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKG 154


                  ....*.
gi 2054262403 161 PLRKKN 166
Cdd:MTH00166  155 PLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-166 7.01e-28

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 101.42  E-value: 7.01e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262403   1 MKTLYMLSMMMNSMFTTTKQPMIMVMIILTQTIIIAIKTGMESESFWFSYMLVIIFIGGMMVMFIYITSITPNEMNSTNL 80
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262403  81 MLTLTSMLLFSAIALITMMKTNHMSNLETNTMSIEMISneystiLKPLFNEPMNKISLMMMIYLFIAMIAVTKITDLKSG 160
Cdd:MTH00166   81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFS------LSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKG 154


                  ....*.
gi 2054262403 161 PLRKKN 166
Cdd:MTH00166  155 PLRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-165 1.22e-08

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 51.16  E-value: 1.22e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262403   1 MKTLYMLSMMMNSMFTTTKQPMIMVMIILTQTIIIAIKTGMESESfWFSYMLVIIFIGGMMVMFIYITSITPNEMNSTNL 80
Cdd:MTH00212    3 LSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMESNS-WYGYILFLIYIGGLLVLFGYMVALSPNEHLFFKK 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262403  81 MLTLTSMLLFSAIALITMMktnhmsNLETNTMSIEMISNEYSTILKPLFNEPMnKISLMMMIYLFIAMIAVTKITDLKSG 160
Cdd:MTH00212   82 YFKGFGMILISLNLYLLLM------TLGSSNFSPMLNLKLELNVSKILSNNNI-PILLFLGLILLIALLMVVKICQYYKG 154


                  ....*
gi 2054262403 161 PLRKK 165
Cdd:MTH00212  155 PLRPF 159
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-163 9.34e-07

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 46.03  E-value: 9.34e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262403   1 MKTLYMLSMMMNSMFTTTKQPMIMVMIILTQTIIIAIKTGMESeSFWFSYMLVIIFIGGMMVMFIYITSITPNEMNSTNL 80
Cdd:MTH00152    3 LMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTL-SSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSNF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262403  81 MLTLTSMLLFSAIALITMMkTNHMSNLETNTMSIEMISNEYSTILKPLFNEPMNKISLMMMIYLFIAMIAVTKITDLKSG 160
Cdd:MTH00152   82 KFVFFSLTLFGFLGLFFFF-LYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEG 160


                  ...
gi 2054262403 161 PLR 163
Cdd:MTH00152  161 SLR 163
ND6 MTH00015
NADH dehydrogenase subunit 6; Validated
 3-163 5.71e-03

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 164590  Cd Length: 155  Bit Score: 35.60  E-value: 5.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262403   3 TLYMLSMMMNSMFTTTKQPMIMVMIILTQTIIIAIKTGMESESFWFSYMLVIIFIGGMMVMFIYITSITPNEMNSTnlml 82
Cdd:MTH00015    4 SFFLILMISLTCSLFLATTPITLGINILMMALLLATTMASALSSWFAFLTFLIYVGGMLVMFAYFLALTPNQQLNL---- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262403  83 tltsmllfSAIALITMMKTNHMSNLETNTMSIEMISNEYSTILKPLFNEPMNKISLMMMIYLFIAMIAVTKITDLKSGPL 162
Cdd:MTH00015   80 --------GPMAKYTLITLLTLSTTLKLTNPPSPSFFSSTQGNTFLYQPENAPLLIFLALILLLTMVIVVKLTRRSSGPL 151


                  .
gi 2054262403 163 R 163
Cdd:MTH00015  152 R 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH