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Conserved domains on  [gi|2075393392|gb|QYF10868|]
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small cysteine rich protein [Tobacco rattle virus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF728 super family cl05055
Protein of unknown function (DUF728); This family consists of several uncharacterized ...
1-139 4.54e-66

Protein of unknown function (DUF728); This family consists of several uncharacterized tobravirus proteins of unknown function.


The actual alignment was detected with superfamily member pfam05304:

Pssm-ID: 461617  Cd Length: 139  Bit Score: 196.82  E-value: 4.54e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2075393392   1 MT*VLKGCVNEVTVLGHETCSIGHANKLRKQVADMVGVTRRCAENNCGWFVCVVINDFTFDVYNCCGRSHLEKCRKRVET 80
Cdd:pfam05304   1 MCCLKGCCNEETTLGGEECCIGGAAKKLKKQAADMGGTRRCAAENCCGFFCCVIIDDFFDDVNCCCGRHHEECCKKREER 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2075393392  81 RNREIWKQIRRNQAENMSATAKKSHNSKTSKKKFKEDREFGTPKRFLRDDVPFGIDRLF 139
Cdd:pfam05304  81 NNEEIKKIIRNNAAEMMAAAAKKHHNKKSKKKFFEDDEEFGPKKFFLDDDPFFGDDLFA 139
 
Name Accession Description Interval E-value
DUF728 pfam05304
Protein of unknown function (DUF728); This family consists of several uncharacterized ...
1-139 4.54e-66

Protein of unknown function (DUF728); This family consists of several uncharacterized tobravirus proteins of unknown function.


Pssm-ID: 461617  Cd Length: 139  Bit Score: 196.82  E-value: 4.54e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2075393392   1 MT*VLKGCVNEVTVLGHETCSIGHANKLRKQVADMVGVTRRCAENNCGWFVCVVINDFTFDVYNCCGRSHLEKCRKRVET 80
Cdd:pfam05304   1 MCCLKGCCNEETTLGGEECCIGGAAKKLKKQAADMGGTRRCAAENCCGFFCCVIIDDFFDDVNCCCGRHHEECCKKREER 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2075393392  81 RNREIWKQIRRNQAENMSATAKKSHNSKTSKKKFKEDREFGTPKRFLRDDVPFGIDRLF 139
Cdd:pfam05304  81 NNEEIKKIIRNNAAEMMAAAAKKHHNKKSKKKFFEDDEEFGPKKFFLDDDPFFGDDLFA 139
 
Name Accession Description Interval E-value
DUF728 pfam05304
Protein of unknown function (DUF728); This family consists of several uncharacterized ...
1-139 4.54e-66

Protein of unknown function (DUF728); This family consists of several uncharacterized tobravirus proteins of unknown function.


Pssm-ID: 461617  Cd Length: 139  Bit Score: 196.82  E-value: 4.54e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2075393392   1 MT*VLKGCVNEVTVLGHETCSIGHANKLRKQVADMVGVTRRCAENNCGWFVCVVINDFTFDVYNCCGRSHLEKCRKRVET 80
Cdd:pfam05304   1 MCCLKGCCNEETTLGGEECCIGGAAKKLKKQAADMGGTRRCAAENCCGFFCCVIIDDFFDDVNCCCGRHHEECCKKREER 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2075393392  81 RNREIWKQIRRNQAENMSATAKKSHNSKTSKKKFKEDREFGTPKRFLRDDVPFGIDRLF 139
Cdd:pfam05304  81 NNEEIKKIIRNNAAEMMAAAAKKHHNKKSKKKFFEDDEEFGPKKFFLDDDPFFGDDLFA 139
DUF728 pfam05304
Protein of unknown function (DUF728); This family consists of several uncharacterized ...
2-140 5.71e-66

Protein of unknown function (DUF728); This family consists of several uncharacterized tobravirus proteins of unknown function.


Pssm-ID: 461617  Cd Length: 139  Bit Score: 196.82  E-value: 5.71e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2075393392   2 T*VLKGCVNEVTVLGHETCSIGHANKLRKQVADMVGVTRRCAENNCGWFVCVVINDFTFDVYNCCGRSHLEKCRKRVETR 81
Cdd:pfam05304   1 MCCLKGCCNEETTLGGEECCIGGAAKKLKKQAADMGGTRRCAAENCCGFFCCVIIDDFFDDVNCCCGRHHEECCKKREER 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2075393392  82 NREIWKQIRRNQAENMSATAKKSHNSKTSKKKFKEDREFGTPKRFLRDDVPFGIDRLFA 140
Cdd:pfam05304  81 NNEEIKKIIRNNAAEMMAAAAKKHHNKKSKKKFFEDDEEFGPKKFFLDDDPFFGDDLFA 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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