|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15319 |
PRK15319 |
fibronectin-binding autotransporter adhesin ShdA; |
1-1826 |
0e+00 |
|
fibronectin-binding autotransporter adhesin ShdA;
Pssm-ID: 185219 [Multi-domain] Cd Length: 2039 Bit Score: 2571.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1 MYVVASELARGHSKVKAQVCASETHSPNQKSEYGQIIKATRAALACAVAAALGFFSPLAMADNQVSYADAQTHVLDASTP 80
Cdd:PRK15319 4 MYVVASELARGHSKVKAQVCASETHSPNQKSEYGQIIKATRAALACAVAAALGFFSPLAMADNQVSYADAQTHVLDASTP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 81 PMSYSGTDEGSALYVSGVATVGWQPTTVTGTGLVIETSGGGADDPDGGKYVSNAISLDHYAILELTDAKITTTGIYTQGI 160
Cdd:PRK15319 84 PISYSGTDEGAALYVSGVATVGWQPTTVTGTGLVIETSGGGADDPDGGKYVSNAISLDHYAILELTDAKITTTGIYTQGI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 161 SAADGSKLTLTDSTLTIDGNFGVMTLYTGSEATLDGTIVEAANSSSAQVQQGSTLNVLDGSTITLAQGQINVVAGNTATD 240
Cdd:PRK15319 164 SAADGSTLTLTDSTLTIDGNFGVMTLYTGSEATLDGTIVEAANSSSAQVQQGSTLNVLDGSTITLAQGQINVVAGNTATD 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 241 EGSTLNLSDSSVSSAGTMSTIQGTNKAALNLTNATITHTNASGAAVQANNATTLDIIGGNITSAGTGVYILASDARIDGA 320
Cdd:PRK15319 244 EGSTLNLSDSSVSSAGTMSTIQGTNKAALNLTNATITHTNASGAAVQANNATTLDISGGNITSAGTGVYILASDARIDGA 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 321 TINADGDGIFITSKRKLDGYEDLNALTVNKAQVNSDTIALHVDTGTTINAPIVLTDSTFEAPEVIKLGSKVVIQANNTTL 400
Cdd:PRK15319 324 TINADGDGIFITSKRKLTGYEDLNALTVSDANVTSDTVALHVDGSTTINDPIELTDSTFTAPTAIKLGSKATIQAENTTL 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 401 IGDVAQSDMSSSSLSLSQGSTLTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLTNDGDITLGNASGSTGTLLTVDNTLTLQ 480
Cdd:PRK15319 404 TGNIVQTDASSSSLSLSQGSTLTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLTNDGDITLGNASGSTGTLLTVDNTLTLQ 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 481 DDSQINATLDTANSSPIIKAANVTLGGTLNLSSTATFVAPETDEHFGSITLIDSQSAITTDFDSVTLDADTSAMPDYLTI 560
Cdd:PRK15319 484 DGSQINATLDTANSSPIIKAANVTLDGTLNLSSTATFVAPETDEHFGSITLIDSQTAITTDFDSVTLDADTSAMPDYLTI 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 561 NAGVDANDNTNYELSTGLSWYAGANSARAAHGTFTVDAGSTFTVTSELDETTATSNWNGSKLTKQGDGTL---------- 630
Cdd:PRK15319 564 NAGVDANDNTNYELSTGLSWYAGANSARAAHGTFTVDAGSTFTVTSELDETTATSNWNGSKLTKQGDGTLilsntgndyg 643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 631 -------------------------------------------------------ILSNTGNDYGDTEIDGGILAAKDAA 655
Cdd:PRK15319 644 dteidggilaakdaaalgtgdvtiaesatlalsqgtldnnvtgegqivksgsdelIVTGDNNYSGGTTISGGTLTADHAD 723
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 656 ALGTGDVT------------------------------------------------------------------------ 663
Cdd:PRK15319 724 SLGSGDVDnsgvlkvgegelenilsgsgslvktgtgeltlsgdntysggttitggtltadhadslgsgdidnsgvlkvge 803
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 664 ----------------------------------------------------IAESATLELSQGTLDNNVTGEGQIVKSG 691
Cdd:PRK15319 804 gdlentlsgsgslvktgtgeltlsggndysggttiiggtltadhadslgsgdIDNSGVLQVGEGELKNTLFGSGSLVKTG 883
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 692 SDELIVTGANDYSGGTTISAGALTADHADSLGTGTIANNGVLKVGEGELENTLSGTGSLVKTGTGELTLSGDNDYSGGTT 771
Cdd:PRK15319 884 TGELTLNGDNDYSGGTTIDDGVLIADHADSLGTGAVANSGVLQVGEGELKNTLSGSGSLVKTGTGELTLSGDNSYSGGTT 963
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 772 IDDGVLIADNADSLGTGAVANNGELQVGEGELENTLSGSGSLVKTGTGELTLNGDNSYSGGTTITGGTLIAANVNALGGG 851
Cdd:PRK15319 964 IIGGTLIADHADSLGTGAVANSGVLQVGEGELENTLSGSGSLVKTGTGELTLGGDNSYSGDTTIADGTLIAANVNALGSG 1043
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 852 DVDNAGTLKLDAEGEFNLANVTTQSGATTELSKGTTLNVDSLTQQADSTLNIDLSKTNGESAITADSVSLAGALNITGIG 931
Cdd:PRK15319 1044 NIDNSGTLMLDANGAFELANITTHSGATTALAAGSTLDAGQLTQEDGSTLSIDLGAATDDAVITADSVTLGGTLNVTGIG 1123
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 932 NVTDSWTPEAYTYTLIDSDSAITTDFNDLTVAGMNSEDVDFLTIDGKVDEADNTHYDLTASLSWYADRDNATTDAHGTFT 1011
Cdd:PRK15319 1124 SVTDSWTPEAYTYTLIDSDSAITSDFDDLTIAGMNREDVDFLTIDGKVDEADNTHYDLTASLSWYADRDNATTDAHGTFT 1203
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1012 LSDPDGSFNVAATLTDVDDTLDPGSRWDGKSLTKEGAGTLILSGDNDYSGGTTINEGTLVAASTTALGTGLVDNNATLVL 1091
Cdd:PRK15319 1204 LSDPDGSFNVAATLTDVDDTLDPGSRWDGKSLTKEGAGTLILSGDNDYSGGTTINEGTLVAASTTALGTGLVDNNATLVL 1283
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1092 DVDGEVSAVGGITTHSGATTQLALGTSLDLGDSALIQQDGSTLNVELNSDSVQPLITGGSATLGGDLVVSDASLQARASD 1171
Cdd:PRK15319 1284 DADGEVSAVGGITTHSGATTQLALGTSLDLGDSALIQQDGSTLNVELNSDSVQPLITGGSATLGGDLVVSDASLQARASD 1363
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1172 AEFQSFKLMDMDSDISGDFTSLKMNLTDQPDYLTVTGTINPEDASEYLLTEGLSWNATATSATPAHGTFTLGAGDSFEVT 1251
Cdd:PRK15319 1364 AEFQSFKLMDMDSDISGDFTSLTMNLTDQPDYLTVTGTINPEDASEYLLTEGLSWNATATSATPAHGTFTLGAGDSFEVT 1443
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1252 SVLGDKTGNGDWDGKSLTKLGAGKLTLSGANTYTGDTNVQEGTLWLAGDGTIGEVGSQQAVNVASDATFGGSNGTTVNGK 1331
Cdd:PRK15319 1444 SVLGDKTGNGDWDGKSLTKLGAGKLTLSGANTYTGDTNVQEGTLWLSGDGSIGEMGSQQAVNVASGATFGGSNGTTVNGK 1523
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1332 VTNEGTLVFGDSEETGAIFTLNGDLINMGTMTSGSSSSTPGNTLYVDGDYTGNGGSLYLNTVLGDDDSATDKLVITGDAS 1411
Cdd:PRK15319 1524 VTNEGTLVFGDSEETGAIFTLNGDLINMGTMTSGSSSSTPGNTLYVDGNYTGNGGSLYLNTVLGDDDSATDKLVITGDAS 1603
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1412 GTTDLYINGIGDGAQTTNGIEVVDVGGVSTSDAFELKNEVNAGLYTYRLYWNESDNDWYLASKAQSDDDDSGGDDsdvTP 1491
Cdd:PRK15319 1604 GTTDLYINGIGDGAQTTNGIEVVDVGGVSTSDAFELKNEVNAGLYTYRLYWNESDNDWYLASKAQSDDDDSGGDD---TP 1680
|
1690 1700 1710 1720 1730 1740 1750 1760
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1492 SDGGDDGGNVTPPDD------------------------GGDVAPQYRADIGAYMGNQWMARNLQMQTLYDREGSQYRNA 1547
Cdd:PRK15319 1681 SDGGDDGGNVTPPDDggdggnvtppddggdggdvtppdhGGDVAPQYRADIGAYMGNQWMARNLQMQTLYDREGSQYRNA 1760
|
1770 1780 1790 1800 1810 1820 1830 1840
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1548 DGSVWARFKAGKAESEAVSGNIDMDSNYSQFQLGGDILAWGNGQQSVTVGVMASYINADTDSTGNRGADGSQFTSSGNVD 1627
Cdd:PRK15319 1761 DGSVWARFKAGKAESEAVSGNIDMDSNYSQFQLGGDILAWGNGQQSVTVGVMASYINADTDSTGNRGADGSQFTSSGNVD 1840
|
1850 1860 1870 1880 1890 1900 1910 1920
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1628 GYNLGVYATWFADAQTHSGAYVDSWYQYGFYNNSVESGDAGSESYDSTANAVSLETGYRYDIALSNGNTVSLTPQAQVVW 1707
Cdd:PRK15319 1841 GYNLGVYATWFADAQTHSGAYVDSWYQYGFYNNSVESGDAGSESYDSTANAVSLETGYRYDIALSNGNTVSLTPQAQVVW 1920
|
1930 1940 1950 1960 1970 1980 1990 2000
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1708 QNYSADSVKDNYGTRIDGQDGDSWTTRLGLRVDGKLYKGSRTVIQPFAEANWLHTSDDVSVSFDDATVKQDLPANRAELK 1787
Cdd:PRK15319 1921 QNYSADSVKDNYGTRIDGQDGDSWTTRLGLRVDGKLYKGSRTVIQPFAEANWLHTSDDVSVSFDDATVKQDLPANRAELK 2000
|
2010 2020 2030
....*....|....*....|....*....|....*....
gi 1478601329 1788 VGLQADIDKQWSVRAQVAGQTGSNDFGDLNGSLNLRYNW 1826
Cdd:PRK15319 2001 VGLQADIDKQWSVRAQVAGQTGSNDFGDLNGSLNLRYNW 2039
|
|
| autotrans_barl |
TIGR01414 |
outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, ... |
1372-1826 |
1.68e-101 |
|
outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273608 [Multi-domain] Cd Length: 431 Bit Score: 333.20 E-value: 1.68e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1372 GNTLYVDGDYTGNGGsLYLNTVLGDDDSATDKLVITGDASGTTDLYINGIGD-GAQTTNGIEVVDVGGvSTSDAFELKN- 1449
Cdd:TIGR01414 5 FNTLTVNGLYTGNGG-FVMNTDLGGDNSQTDRLVVNGNASGTTGVVVNNIGGeGAQTGDGITLVTVNG-GSDAAFTLANg 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1450 EVNAGLYTYRLYWN--ESDNDWYLASKAQSddddsggddsdvtpsdggddggnvtPPDDGGDVAPQYRADIGAYMGNQWM 1527
Cdd:TIGR01414 83 KVDAGAYTYTLYKNgtEDNNNWYLTSSLPD-------------------------LTPPGQQLSPTYRAEAGSYAANANA 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1528 ARNLQ-MQTLYDREGSQYRNADG---SVWARFKAGKAESEAVSGNIDMDSNYSQFQLGGDILAWGNGQQSVTVGVMASYI 1603
Cdd:TIGR01414 138 ALFLAeLDTLRQRMGDLRSAARDagnGVWARIFGGDNHLDGDAGAAGYDQNTTGVQLGGDILLAGNADGDLHVGLMAGYA 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1604 NADTDSTGNRGadgsqfTSSGNVDGYNLGVYATWFADaqthSGAYVDSWYQYGFYNNSVESGDAG---SESYDSTANAVS 1680
Cdd:TIGR01414 218 KADIKTRSYKY------GGKGKVDGYGLGLYGTWLQD----SGAYVDGVLQYSRFRNDVSSTGSNgkvSGKYNSNGFTAS 287
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1681 LETGYRYDIAlsnGNTVSLTPQAQVVWQNYSADSVKDNYGTRIDGQDGDSWTTRLGLRVDGKLYKGSRTVIQPFAEANWL 1760
Cdd:TIGR01414 288 LEAGYRYNLG---GNGWYVEPQAQLSYFGVSGDDYKESNGTRVLGGGGDSLQGRLGLRVGYQFDLGTGRAVKPYLKANVL 364
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1478601329 1761 H-TSDDVSVSFDDATVKQDLPANRAELKVGLQADIDKQWSVRAQVAGQTGSNDFGDLNGSLNLRYNW 1826
Cdd:TIGR01414 365 HeFKGGTGVRVNGVTIRNDFSGTRAEYGVGVNAKIKDNLSLYADVDYQKGGKKYTDNQGNLGVRYSF 431
|
|
| AidA |
COG3468 |
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ... |
1001-1826 |
5.25e-79 |
|
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain] Cd Length: 846 Bit Score: 281.06 E-value: 5.25e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1001 NATTDAHGTFTLSDPDGSFNVAATLTDVDDTLDPGSRWDGKSLTKEGAGTLILSGDNDYSGGTTINEGTLVAASTTALGT 1080
Cdd:COG3468 48 GAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAGSGGTGGNSTGGGGGNSGTGGTGGGGGGGGSGNGGGGGGGGGGGGTGG 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1081 GLVDNNATLVLDVDGEVSAVGGITTHSGATTQLALGTSLDLGDSALIQQDGSTLNVELNSDSVQPLITGGSATLGGDLVV 1160
Cdd:COG3468 128 GGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGGTGSGGGGSGGGGGAGGGGGGGAGGSGGAGSTGSGAGGGGGGSGGGGG 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1161 SDASLQARASDAEFQSFKLMDMDSDISGDFTSLKMNLTDQPDYLTVTGTINPEDASEYLLTEGLSWNATATSATPAHGTF 1240
Cdd:COG3468 208 AAGTGGGGGGGGGAGGATGGAGSGGNTGGGVGGGGGSAGGTGGGGLTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGG 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1241 TLGAGDSFEVTSVLGDKTGNGDWDGKSLTKLGAGKLTLSGANTYTGDTNVQEGTLWLAGDGTIGEVGSQQAVNVASDATF 1320
Cdd:COG3468 288 GGGASGTGGGGTASTGGGGGGGGGNGGGGGGGSNAGGGSGGGGGGGGGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGG 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1321 GGSNGTTVNGKVTNEGTLVFGDSEETGAIFTLNGD-LINMGTMTSGSSSSTPGNTLYVDGDYTGNGGSLYLNTVLGDDDS 1399
Cdd:COG3468 368 GGGGGSGGGGGAGGGGANTGSDGVGTGLTTGGTGNnGGGGVGGGGGGGLTLTGGTLTVNGNYTGNNGTLVLNTVLGDDNS 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1400 ATDKLVITGDASGTTDLYINGI-GDGAQTTNGIEVVDVGGvSTSDAFELKNEVNAGLYTYRLY---WNESDNDWYLASKA 1475
Cdd:COG3468 448 PTDRLVVNGNTSGTTGVRVNNAgGLGAQTVNGIEVVEVNG-ASDGAFTLGGRVVAGAYEYTLYqggSGGDDGNWYLRSTL 526
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1476 qsddddsggddsdvtpsdggddggnvtppDDGGDVAPQYRADIGAYMGNQWMARNL-QMQTLYDREGSQYRN-----ADG 1549
Cdd:COG3468 527 -----------------------------TPPDPPTPVYRPEVPSYLANPAAANGLfELGTLHDRLGERRYTdtgesDNS 577
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1550 SVWARFKAGKAESEAVSGNIDMDSNYSQFQLGGDILAWGNGQQSVTVGVMASYINADTDSTGNRGADGsqftsSGNVDGY 1629
Cdd:COG3468 578 GAWLRVEGGHNRSRDSSGQLDYDSNRYGLQLGGDLLQWEDGGGRLHVGVMAGYGNGDSDVRSRATGTG-----KGDVDGY 652
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1630 NLGVYATWFADaqthSGAYVDSWYQYGFYNNSVESGDAG--SESYDSTANAVSLETGYRYDIalsnGNTVSLTPQAQVVW 1707
Cdd:COG3468 653 SLGLYGTWYGN----NGFYVDGVLQYSWFDNDVSSDDLGgvTGSYDGNGYSASLEAGYPFKL----GEGWSLEPQAQLIY 724
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1708 QNYSADSVKDNYGTRIDGQDGDSWTTRLGLRVDGKLYKGSRTVIQPFAEANWLH-TSDDVSVSFDDATVKQDLPANRAEL 1786
Cdd:COG3468 725 QGVDFDDFTDSNGTRVSGDDGDSLQGRLGLRLGYEFHWDDGRALQPYLEANWLHeFLGDNSVTVNGVSFSQDGSGTWGEL 804
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 1478601329 1787 KVGLQADIDKQWSVRAQVAGQTGSNDFG--DLNGSLNLRYNW 1826
Cdd:COG3468 805 GLGVTGQLNKNLSLYGDVGYQTGLDGYDssDTSGNLGVRYSF 846
|
|
| PRK14849 |
PRK14849 |
autotransporter barrel domain-containing lipoprotein; |
1054-1826 |
6.27e-61 |
|
autotransporter barrel domain-containing lipoprotein;
Pssm-ID: 184851 [Multi-domain] Cd Length: 1806 Bit Score: 231.93 E-value: 6.27e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1054 SGDNDYSGGTTINEGTLVAASTTALG-TGLVDNNATLVLDVDGEVSAVGGITTHSGATTQLALGtsldlgdsALIQQDGS 1132
Cdd:PRK14849 1036 NGQNDYQGATYVQMGTLRTDADGALGnTRELNISNAAIVDLNGSTQTVETFTGQMGSTVLFKEG--------ALTVNKGG 1107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1133 tlnvelnsdsvqplITGGSATLGGDLVVSDASLQARASDAEFQSFKLMDMDSDISGDFT--------------SLKMNLT 1198
Cdd:PRK14849 1108 --------------ISQGELTGGGNLNVTGGTLAIEGLNARYNALTSISPNAEVSLDNTqglgrgniandgllTLKNVTG 1173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1199 DQPDYLTVTGTINPEDASEYLLT---------------EGLSWNATAT---SATPAHGTFTLGAGDSFEVTSVLgdkTGN 1260
Cdd:PRK14849 1174 ELRNSISGKGIVSATARTDVELDgdnsrfvgqfnidtgSALSVNEQKNlgdASVINNGLLTISTERSWAMTHSI---SGS 1250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1261 GDwdgksLTKLGAGKLTLSG-ANTYTGDTNVQEGTLWLAGDGTIGEvgSQQAVNVASDATFGGSNGTTVNGKVTNEGTLV 1339
Cdd:PRK14849 1251 GD-----VTKLGTGILTLNNdSAAYQGTTDIVGGEIAFGSDSAINM--ASQHINIHNSGVMSGNVTTAGDVNVMPGGTLR 1323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1340 FGDSeetgaifTLNGDLINMGTMTSGSSSSTPGNTLYVDGDYTGNGGSLYLNTVLGDDDSATDKLVITGDASGTTDLYIN 1419
Cdd:PRK14849 1324 VAKT-------TIGGNLENGGTVQMNSEGGKPGNVLTVNGNYTGNNGLMTFNATLGGDNSPTDKMNVKGDTQGNTRVRVD 1396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1420 GIGD-GAQTTNGIEVVDVGGVSTSDAFELKNEVNAGLYTYRLYWNESDND--WYLASKAQSddddsggddsdVTPSDGGD 1496
Cdd:PRK14849 1397 NIGGvGAQTVNGIELIEVGGNSAGNFALTTGTVEAGAYVYTLAKGKGNDEknWYLTSKWDG-----------VTPPDTPD 1465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1497 DGGNvtPPDDGGDVAPQYRADIGAYMGNQWMARNLQMQTLYDREGS-QY------RNADGSVWARFKAGKAESEAVSGNI 1569
Cdd:PRK14849 1466 PINN--PPVVDPEGPSVYRPEAGSYISNIAAANSLFSHRLHDRLGEpQYidslhsQGSASSMWMRHVGGHERSRAGDGQL 1543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1570 DMDSNYSQFQLGGDILAWG-NGQQSVTVGVMASYINADTDSTGNRGAdgsqFTSSGNVDGYNLGVYATWFADAQTHSGAY 1648
Cdd:PRK14849 1544 NTQANRYVLQLGGDLAQWSsNAQDRWHLGVMAGYANQHSNTQSNRVG----YKSDGRISGYSAGLYATWYQNDANKTGAY 1619
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1649 VDSWYQYGFYNNSVESGDAGSESYDSTANAVSLETGYRYDIALSNG-----NTVSLTPQAQVVWQNYSADSVKDNYGTRI 1723
Cdd:PRK14849 1620 VDSWALYNWFDNSVSSDNRSADDYDSRGVTASVEGGYTFEAGTFSGsegtlNTWYVQPQAQITWMGVKDSDHTRKDGTRI 1699
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1724 DGQDGDSWTTRLGLRV----DGKLYKGSRTVIQPFAEANWLHTSDDVSVSFDDATVKQDLPANRAELKVGLQADIDKQWS 1799
Cdd:PRK14849 1700 ETEGDGNVQTRLGVKTylnsHHQRDDGKQREFQPYIEANWINNSKVYAVKMNGQTVGREGARNLGEVRTGVEAKVNNNLS 1779
|
810 820
....*....|....*....|....*..
gi 1478601329 1800 VRAQVAGQTGSNDFGDLNGSLNLRYNW 1826
Cdd:PRK14849 1780 LWGNVGVQLGDKGYSDTQGMLGVKYSW 1806
|
|
| PRK15313 |
PRK15313 |
intestinal colonization autotransporter adhesin MisL; |
1371-1826 |
4.68e-56 |
|
intestinal colonization autotransporter adhesin MisL;
Pssm-ID: 237940 [Multi-domain] Cd Length: 955 Bit Score: 213.12 E-value: 4.68e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1371 PGNTLYVDGDYTGNGGSLYLNTVLGDDDSATDKLVITGDASGTTDLYINGIGD-GAQTTNGIEVVDVGGvSTSDAFELKN 1449
Cdd:PRK15313 456 PWQTLTINEDYVGNGGKLVFNTVLNDDDSETDRLQVLGNTSGNTFVAVNNIGGaGAQTIEGIEIVNVAG-NSNGTFEKAS 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1450 EVNAGLYTYRLYwnESDNDWYLASKAQSDDDDSGGDDSDVTPSDGGDDGGNVTP-------------------------- 1503
Cdd:PRK15313 535 RIVAGAYDYNVV--QKGKNWYLTSYIEPDEPIIPDPVDPVIPDPVIPDPVDPDPvdpvipdpvipdpvdpdpvdpepvdp 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1504 -------PDDGGDVAP-----QYRADIGAYMGNQWMARNLQMQTLYDREG-SQYRN------ADGSVWARFKAGKAESEA 1564
Cdd:PRK15313 613 vipdptiPDIGQSDTPpitehQFRPEVGSYLANNYAANTLFMTRLHDRLGeTQYTDmltgekKVTSLWMRNVGAHTRFND 692
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1565 VSGNIDMDSNYSQFQLGGDILAWG-NGQQSVTVGVMASYINADTDSTGNRgadgSQFTSSGNVDGYNLGVYATWFADAQT 1643
Cdd:PRK15313 693 GSGQLKTRINSYVLQLGGDLAQWStDGLDRWHIGAMAGYANSQNRTLSSV----SDYHSRGQVTGYSVGLYGTWYANNID 768
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1644 HSGAYVDSWYQYGFYNNSVESGDAGSESYDSTANAVSLETGYRYDIALSNGNTVSLTPQAQVVWQNYSADSVKDNYGTRI 1723
Cdd:PRK15313 769 RSGAYVDTWMLYNWFDNKVMGQDQAAEKYKSKGITASVEAGYSFRLGESAHQSYWLQPKAQVVWMGVQADDNREANGTLV 848
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1724 DGQDGDSWTTRLGLRV----DGKLYKGSRTVIQPFAEANWLHTSDDVSVSFDDATVKQDLPANRAELKVGLQADIDKQWS 1799
Cdd:PRK15313 849 KDDTAGNLLTRMGVKAyingHNAIDDNKSREFQPFVEANWIHNTQPASVKMDDVSSDMRGTKNIGELKVGIEGQITPRLN 928
|
490 500
....*....|....*....|....*..
gi 1478601329 1800 VRAQVAGQTGSNDFGDLNGSLNLRYNW 1826
Cdd:PRK15313 929 VWGNVAQQVGDQGYSNTQGLLGVKYSF 955
|
|
| PRK09752 |
PRK09752 |
AIDA-I family autotransporter YfaL; |
1236-1826 |
1.09e-45 |
|
AIDA-I family autotransporter YfaL;
Pssm-ID: 182059 [Multi-domain] Cd Length: 1250 Bit Score: 181.41 E-value: 1.09e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1236 AHGTFTLGAGDSFEVTSVLGDKTGNGDWDGKSLTKLGAGKLTLSGANTYTGDTNVQEGTL--------------WLaGDG 1301
Cdd:PRK09752 631 ADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLkgdvadiipyasslWV-GDG 709
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1302 TIGEVG--------------------------SQQAVNVASDATFGGSNGTTVNGK--VTNEGTL---VFGDSEETGAIF 1350
Cdd:PRK09752 710 ATFVTGadqdiqsidatssgtidisdgtvlrlTGQDTSVALNASLFNGDGTLVNATdgVTLTGELntnLETDSLTYLSDV 789
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1351 TLNGDLINMGTMTSGSSSSTpGNTLYVDGDYTGnGGSLYLNTVLGDDDSATDKLVITGDASGTTDLYINGI-GDGAQTTN 1429
Cdd:PRK09752 790 TVNGNLTNTSGAVSLQNGVA-GDTLTVNGDYTG-GGTLLLDSELNGDDSVSDQLVLNGNTAGNTTVVVNSItGIGEPTST 867
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1430 GIEVVDVGGVST----SDAFELKNE--VNAGLYTYRLYwnESDNDWYLasKAQSDDDDSGGDDSDVTPSDGGDDGGNVTP 1503
Cdd:PRK09752 868 GIKVVDFAADPTqfqnNAQFSLAGSgyVNMGAYDYTLV--EDNNDWYL--RSQEVTPPSPPDPDPTPDPDPTPDPDPTPD 943
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1504 PDDGGDVAPQYRADIGAYMGNQWMARNLQMQTLYDREGsqyrnADGSVWARFKAGKAESEAVSGNIDMDSNYSQFQLGGD 1583
Cdd:PRK09752 944 PEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAG-----GDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGD 1018
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1584 ILA--WGNGQQSVtVGVMASYinadTDSTGNRGADGSQFTSSGNVDGYNLGVYATWFADAQTHSGAYVDSWYQYGFYNNS 1661
Cdd:PRK09752 1019 LFSgrWGDDGEWM-LGIVGGY----SDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFNND 1093
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1662 VESGDAGSESYDSTANAVSLETGYRYdialSNGNTVSLTPQAQVVWQNYSADSVKDNYGTRIDGQDGDSWTTRLGLRVDG 1741
Cdd:PRK09752 1094 VSEQEDGTDHYHSSGIIASLEAGYQW----LPGRGVVIEPQAQVIYQGVQQDDFTAANHARVSQSQGDDIQTRLGLHSEW 1169
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1742 KLYKGsrtvIQPFAEANWLHTSDDVSVSFDDATVKQDLPANRAELKVGLQADIDKQWSVRAQVAGQTGSNDFGDLNGSLN 1821
Cdd:PRK09752 1170 RTAVH----VIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLS 1245
|
....*
gi 1478601329 1822 LRYNW 1826
Cdd:PRK09752 1246 MTVKW 1250
|
|
| auto_AIDA-I |
NF033176 |
autotransporter adhesin AIDA-I; |
1267-1826 |
5.47e-39 |
|
autotransporter adhesin AIDA-I;
Pssm-ID: 380183 [Multi-domain] Cd Length: 1287 Bit Score: 159.82 E-value: 5.47e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1267 SLTKLGAGKLTLSGANTYTGDTNVQEGTLWLaGDGTIGE---VGSQQAVNVASDATFGGS---------NGTTVNGKVTN 1334
Cdd:NF033176 735 ALVKDNSGVMSYEGTLTQARGVNVKNGGIIL-GSAVVNAdmaVSQNAYINISDQATINGSvnnkgsvviNNSIINGNITN 813
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1335 EGTLVFGDSEETGAifTLNGDLINMGTMTSGSSSSTPGNTLYVdGDYTGNGGS-LYLNTVLGDDDSATDKLVITGDASGT 1413
Cdd:NF033176 814 DADLSFGTAKLLSA--TVNGSLVNNKNIILNPTKESAGNTLTV-SNYTGTPGSvISLGGVLEGDNSLTDRLVVKGNTSGQ 890
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1414 TD-LYINGIGDGAQTTNGIEVVDVGGVSTSdAFELKNEVNAGLYTYRLY-WNESDND---WYLASKaqsddddsggddsd 1488
Cdd:NF033176 891 SDiVYVNEGGSGGQTIEGINIISVEGNSDA-EFSLKNRVVAGAYDYTLQkGNVSGTDkkgWYLTSH-------------- 955
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1489 vtpsdggddggnvTPPDDggdvAPQYRADIGAYMGNQWMARNLQMQTLYDREGSQYRNAD-----GSVWARFKAGKAESE 1563
Cdd:NF033176 956 -------------LPTSD----TRQYRPENGSYATNMALANSLFLMDLNERKQFSAVNDNtqpesASVWMKITGGRTSGK 1018
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1564 AVSGNIDMDSNYSQFQLGGDILAWGNGQ-QSVTVGVMASYINADTDSTGNRGADGSQFTssgnVDGYNLGVYATWFADAQ 1642
Cdd:NF033176 1019 LSDGQNKTTTNQFINQLGGDIYKYHAEKlGDFTLGIMGGYANAKGKTINHTSKKGARNT----LDGYSAGLYGTWYQNGA 1094
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1643 THSGAYVDSWYQYGFYNNSVESGDAGSESYDSTANAVSLETGYRYDIALSNG-----NTVSLTPQAQVVWQNYSADSVKD 1717
Cdd:NF033176 1095 NATGLFAETWMQYNWFNASVKGDGLEEEKYNLNGLTASVGGGYNLNVHTWTSpegikGEFWLQPHLQAVWMGVTPDTHQE 1174
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1718 NYGTRIDGQDGDSWTTRLGLR----VDGKLYKGSRTVIQPFAEANWLHTSDDVSVSFDDATVKQDLPANRAELKVGLQAD 1793
Cdd:NF033176 1175 DNGTVVQGTGKNNLQTKAGIRaswkVKSSLDKDTGREFRPYIEANWIHNTHEFGVKMSGDNQLLSGSRNQGEIKTGIEGV 1254
|
570 580 590
....*....|....*....|....*....|...
gi 1478601329 1794 IDKQWSVRAQVAGQTGSNDFGDLNGSLNLRYNW 1826
Cdd:NF033176 1255 ITQNLSVNGGVAYQAGGHGSNAISGALGIKYSF 1287
|
|
| PL2_Passenger_AT |
cd01344 |
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of ... |
1272-1476 |
1.92e-37 |
|
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43, AIDA-1 and IcsA, as well as, the less characterized ShdA, MisL, and BapA autotransporters.
Pssm-ID: 238654 [Multi-domain] Cd Length: 188 Bit Score: 139.74 E-value: 1.92e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1272 GAGKLTLSGANTYTGDTNVQEGTLWLAGDGTIGEVGSQqAVNVASDATFGGsNGTTVNGKVTNEGTLVFGDSEetgaift 1351
Cdd:cd01344 5 GNGGWKLGGDLTLGGGALTLTTSLTLTGTLLTGGAGTL-TLDSTSTWNITG-TSTLNVGNLTNAGTIDLGNGS------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1352 lngdlinmgtmtsgssssTPGNTLYVDGDYTGNGGSLYLNTVLGDDDSATDKLVITGDASGTTDLYINGI-GDGAQTTNG 1430
Cdd:cd01344 76 ------------------PAGGTLTITGNYTGNGGTLRLNTVLGDDDSPTDRLVIDGDASGTTRVAVNNAgGSGATTGNG 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1478601329 1431 IEVVDVGGVSTSDAFELKNEVNAGLYTYRLYWN---ESDNDWYLASKAQ 1476
Cdd:cd01344 138 IEVVEVGGTSSNGAFSLAGRVVAGAYEYRLYRGgvsGNDGNWYLRSELA 186
|
|
| Autotransporter |
pfam03797 |
Autotransporter beta-domain; Secretion of protein products occurs by a number of different ... |
1551-1804 |
6.71e-32 |
|
Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.
Pssm-ID: 461054 [Multi-domain] Cd Length: 255 Bit Score: 125.96 E-value: 6.71e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1551 VWARFKAGKAESEAVSGNIDMDSNYSQFQLGGDILAWGNgqqsVTVGVMASYINADTDSTGNRGadgsqftsSGNVDGYN 1630
Cdd:pfam03797 1 VWARGFGGRGKQDGDGGAAGYDADTGGLQVGADYRLGDN----LRLGVAFGYSRSDADVDGRGG--------SGDSDSYS 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1631 LGVYATWFADaqthSGAYVDSWYQYGFYNNSVE-------SGDAGSESYDSTANAVSLETGYRYDIalsnGNTVSLTPQA 1703
Cdd:pfam03797 69 LGLYGTYYGD----GGWYLDGGLGYGWHDNDTRrsvdlggFSETAKGDYDGNGFGASLEAGYRFAL----GGGWTLEPFA 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1704 QVVWQNYSADSVKDN---YGTRIDGQDGDSWTTRLGLRVDGKLYKGSRTvIQPFAEANWLHTSDDVSVSFDDA------- 1773
Cdd:pfam03797 141 GLAYVRLRLDGFTESggaAALSVDSQSYDSLTGRLGLRLSYTFDLGGGT-LTPYARLGWRHEFGDDDPVTTAAfaglsga 219
|
250 260 270
....*....|....*....|....*....|....*
gi 1478601329 1774 ----TVKQDLPANRAELKVGLQADIDKQWSVRAQV 1804
Cdd:pfam03797 220 gsftVAGADLARDSLELGAGLSAQLSDNLSLYANY 254
|
|
| Autotransporter |
smart00869 |
Autotransporter beta-domain; Secretion of protein products occurs by a number of different ... |
1558-1815 |
3.00e-28 |
|
Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.
Pssm-ID: 214872 [Multi-domain] Cd Length: 268 Bit Score: 116.13 E-value: 3.00e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1558 GKAESEAVSGNIDMDSNYSQFQLGGDILAWGNGQqsVTVGVMASYINADTDSTGNRGAdgsqftSSGNVDGYNLGVYATW 1637
Cdd:smart00869 8 LRQDSSGSGGSAGFDYDSYGLQLGADYRLSDNGN--LSLGFAAGYGNSKVDFSGNKGS------GKGDVDSYGLGLYAGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1638 FADAqthsGAYVDSWYQYGFYNNSVES------GDAGSESYDSTANAVSLETGYRYDIalsnGNTVSLTPQAQVVWQNYS 1711
Cdd:smart00869 80 SLGN----GLYLDAQLGYGRSDNDTKRkvtlggAGRAKGSYDGTGYGASLEAGYRFYL----GGGLTLTPFAGLAYSRVR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1712 ADSVKDNYGT----RIDGQDGDSWTTRLGLRVDGKLYKGSRTVIQPFAEANWLHTSDD---------VSVSFDDATVKQD 1778
Cdd:smart00869 152 QDGFTESGGGafglSVDSQSLDSLSLPLGLRLEYRLALGDGATLTPYLRLAYVHDFYDdnpvvtaslLGSGASFTTSGTD 231
|
250 260 270
....*....|....*....|....*....|....*..
gi 1478601329 1779 LPANRAELKVGLQADIDKQWSVRAQVAGQTGSNDFGD 1815
Cdd:smart00869 232 LDRNAAELGLGLSAKLSNGLSLSLNYDGEFGGSSRSH 268
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
58-1647 |
8.01e-27 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 120.26 E-value: 8.01e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 58 LAMADNQVSYADAQTHVLDASTPPMSYSGTDEGSALYVSGVATVGWQPTTVTGTGLVIETSGGGADDPDGGKYVSNAISL 137
Cdd:COG3210 72 GNTSASTGGIGAAAANTAGTLETGLTSNIGGGSVNGSNSTGNGTLTTTAASATTGNNTGGTTTSSTNTVTTLGGTTTGNT 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 138 DHYAILELTDAKITTTGIYTQGISAADGSKLTLTDSTLTIDGNFGVMTLYTGSEATLDGTIVEAANSSSAQVQQGSTLNV 217
Cdd:COG3210 152 VLSTSGAGNNTNTNNSSSGTNIGNSIPTTGGSLNVVAANPTGVTGVGGALINATAGVLANAGGGTAGGVASANSTLTGGV 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 218 LDGSTITLAQGQINVVAGNTATDEGSTLNLSDSSVSSAGTMSTIQGTNKAALNLTNATITHTNASGAAVQANNATTLDII 297
Cdd:COG3210 232 VAAGTGAGVISTGGTDISSLSVAAGAGTGGAGGTGNAGNTTIGTTVTGTNATGSNTAGASSGDTTTNGTSSVTGAGGTGV 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 298 GGNITSAGTGVYILASDARIDGATINADGDGIFITSKRkldgyeDLNALTVNKAQVNSDTIALHVDTGTTINAPIVLTDS 377
Cdd:COG3210 312 LGGGTAAGITTTNTVGGNGDGNNTTANSGAGLVSGGTG------GNNGTTGTGAGSGLTGTGNGGGLTTAGAGTVASTVG 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 378 TFEAPEVIKLGSKVVIQANNTTLIGDVAQSDMSSSSLSLSQGSTLTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLTNDGD 457
Cdd:COG3210 386 TATASTGNASSTTVLGSGSLATGNTGTTIAGNGGSANAGGFTTTGGVLGITGNGTVTGGTIGGLTGSGTTNGAGLSGNTD 465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 458 ITLGNASGSTGTLLTVDNTLTLQDDSQINATLDTANSSPIIKAANVTLGGTLNLSSTATFVAPETDEHFGSITLIDSQSA 537
Cdd:COG3210 466 VSGTGTVTNSAGNTTSATTLAGGGIGTVTTNATISNNAGGDANGIATGLTGITAGGGGGGNATSGGTGGDGTTLSGSGLT 545
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 538 ITTDFDSVTLDADTSAMPDYLTINAGVDANDNTNYELSTGLSWYAGANSARAAHGTFTVDAGSTFTVTSELDETTATSNW 617
Cdd:COG3210 546 TTVSGGASGTTAASGSNTANTLGVLAATGGTSNATTAGNSTSATGGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGAGA 625
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 618 NGSKLTKQGDGTLILSNTGNdygdTEIDGGILAAKDAAALGTGDVTIAESATLELSQGTLDNNVTGEGQIVKSGSDELIV 697
Cdd:COG3210 626 NATGGGAGLTGSAVGAALSG----TGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNN 701
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 698 TGANDYSGGTTISAGALTADHADSLGTGTIANNGVlkvgeGELENTLSGTGSLVKTGTGELTLSGDNDysggTTIDDGVL 777
Cdd:COG3210 702 AGNTLTISTGSITVTGQIGALANANGDTVTFGNLG-----TGATLTLNAGVTITSGNAGTLSIGLTAN----TTASGTTL 772
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 778 IADNAdslgTGAVANNGELQVGEGELENTLSGSGSLVKTGTGELTLNGDNSYSGGTTITGGTLIAANVNALGGGDVDNAG 857
Cdd:COG3210 773 TLANA----NGNTSAGATLDNAGAEISIDITADGTITAAGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDT 848
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 858 TLKLDAEGEFNLANVTTQSGATTELSKGTTLNVDSLTQQADSTLNIDLSKTNGESAITADSVSLAGALNITGIGNVTDSW 937
Cdd:COG3210 849 TTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTG 928
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 938 TPEAYTYTLIDSDSAITTDFNDLTVAGMNSEDVDFLTIDGKVDEADNTHYDLTASLSWYADRDNATTDAHGTFTLSDPDG 1017
Cdd:COG3210 929 GNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTAST 1008
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1018 SFNVAATLTDVDDTLDPGSRWDGKSLTKEGAGTLILSGDNDYSGGTTINEGTLVAASTTALGTGLVDNNATLVLDVDGEV 1097
Cdd:COG3210 1009 TGGSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNGVGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGA 1088
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1098 SAVGGITTHSGATTQLALGTSLDLGDSALIQQDGSTLNVELNSDSVQPLITGGSATLGGDLVVSDASLQARASDAEFQSF 1177
Cdd:COG3210 1089 GTTHTLGGITNGGATGTSGGTTTSTGGVTASKVGGTTTVGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTA 1168
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1178 KLMDMDSDISGDFTSLKMNLTDQPDYLTVTGTINPEDASEYLLTEGLSWNATATSATPAHGTFTLGAGDSFEVTSVLGDK 1257
Cdd:COG3210 1169 VAAATTTTTGSAINGGADSAATEGTAGTDLKGGDSTGGSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAG 1248
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1258 TGNGDWDGKSLTKLGAGKLTLSGANTYTGDTNVQEGTLWLAGDGTIGEVGSQQAVNVASDATFGGSNGTTVNGKVTNEGT 1337
Cdd:COG3210 1249 SASGTGDATTGATAGAVSNGATSTVAGNAGATATGSTVDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAV 1328
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1338 LVFGDSEETGAIFTLNGDLINMGTMTSGSSSSTPGNTLYVDGDYTGNGGSLYLNTVLGDDDSATDKLVITGDASGTTDLY 1417
Cdd:COG3210 1329 AAVNSGGVNAGGGTINTTAANTGLNGGNGATDSAAGAGSGGAAGSLAATAGAGTVLTGAGNNTGAEGTNAGRDGGVTTSG 1408
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1418 INGIGDGAQTTNGIEVVDVGGVSTSDAFELKNEVNAGLYTYRLYWNESDNDWYLASKAQSDDDDSGGDDSDVTPSDGGDD 1497
Cdd:COG3210 1409 TGVGNNGGVSGTTVAGTTGSSATTGTGGTGNTTGTSVAGAGGGNADASAINTGNASSLGAGGSTAGNAVGGAVIGGTTTG 1488
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1498 GGNVTPPDDGGDVAPQYRADIGAYMGNqwmarnlqMQTLYDREGSQYRNADGSVWARFKAGKAESEAVSGNIDMDSNYSQ 1577
Cdd:COG3210 1489 GNGAGVAGATASNGGTSTGAGGTAGGT--------TAEVAKASLEGGEGTYGGSSVAEAGTGGGILGAVSGAGSEGGAAG 1560
|
1530 1540 1550 1560 1570 1580 1590
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1578 FQLGGDILAWGNGQQSVTVGVMASYINADTDSTGNRGADGSQFTSSGNVDGYNLGVYATWFADAQTHSGA 1647
Cdd:COG3210 1561 GVTGSVGVGGTDGAGGDTGGADDTGAQAPTAGNTATLTLSLAEGTNAEYGGTTNVTSGTAGNAGATGANS 1630
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
97-1733 |
3.82e-26 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 117.95 E-value: 3.82e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 97 GVATVGWQPTTVTGTGLVIETSGGGADDPDGGKYVSNAISLDHYAILELTDAKITTTGIYTQGISAADGSKLTLTDSTLT 176
Cdd:COG3210 42 SGGVGTAGGIASNAGTTASTSGGSGTAGGVGNTSASTGGIGAAAANTAGTLETGLTSNIGGGSVNGSNSTGNGTLTTTAA 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 177 IDGNFGVMTLYTGSEATLDGTIVEAANSSSAQVQQGSTLNVLDGSTITLAQGQINVVAGNTATDEGSTLNLSDSSVSSAG 256
Cdd:COG3210 122 SATTGNNTGGTTTSSTNTVTTLGGTTTGNTVLSTSGAGNNTNTNNSSSGTNIGNSIPTTGGSLNVVAANPTGVTGVGGAL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 257 TMSTIQGTNKAALNLTNATITHTNASGAAVQANNATTLDIIGGNITSAGTGVYILASDARIDGATINADGDGIFITSKRK 336
Cdd:COG3210 202 INATAGVLANAGGGTAGGVASANSTLTGGVVAAGTGAGVISTGGTDISSLSVAAGAGTGGAGGTGNAGNTTIGTTVTGTN 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 337 LDGYEDLNALTVNKAQVNSDTIALHVDTGTTINAPIVLTDSTFEAPEVIKLGSKVVIQANNTTLIGDV-----AQSDMSS 411
Cdd:COG3210 282 ATGSNTAGASSGDTTTNGTSSVTGAGGTGVLGGGTAAGITTTNTVGGNGDGNNTTANSGAGLVSGGTGgnngtTGTGAGS 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 412 SSLSLSQGSTLTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLTNDGDITLGNASGSTGTLLTVDNTLTLQDDSQINATLDT 491
Cdd:COG3210 362 GLTGTGNGGGLTTAGAGTVASTVGTATASTGNASSTTVLGSGSLATGNTGTTIAGNGGSANAGGFTTTGGVLGITGNGTV 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 492 ANSSPIIKAANVTLGGTLNLSSTATFVAPETDEHFGSITLIDSQSAITTDFDSVTLDADTSAMPDYLTINAGVDANDNTN 571
Cdd:COG3210 442 TGGTIGGLTGSGTTNGAGLSGNTDVSGTGTVTNSAGNTTSATTLAGGGIGTVTTNATISNNAGGDANGIATGLTGITAGG 521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 572 YELSTGLSWYAGANSARAAHGTFTVDAGSTFTVTSELD-----ETTATSNWNGSKLTKQGDGTLILSNTGNDYGDTEIDG 646
Cdd:COG3210 522 GGGGNATSGGTGGDGTTLSGSGLTTTVSGGASGTTAASgsntaNTLGVLAATGGTSNATTAGNSTSATGGTGTNSGGTVL 601
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 647 GILAAKDAAALGTGDVTIAESATLELSQGTLDNNVTGEGQIVKSGSDELIVTGANDYSGGTTISAGALTADHADSLGTGT 726
Cdd:COG3210 602 SIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGSAVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSG 681
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 727 IANNGVLKVGEGELENTLSGTGSLVKTGTGELTLSGDNdysGGTTIDDGVLIADNADSLGTGAVANNGELQVGEGELENT 806
Cdd:COG3210 682 ATGGTTGTTLNAATGGTLNNAGNTLTISTGSITVTGQI---GALANANGDTVTFGNLGTGATLTLNAGVTITSGNAGTLS 758
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 807 LSGSGSLVKTGTG-ELTLNGDNSYSGGTTITGGTLIAANVNAlgGGDVDNAGTLKLDAEGEFNLANVTTQSGATTELSKG 885
Cdd:COG3210 759 IGLTANTTASGTTlTLANANGNTSAGATLDNAGAEISIDITA--DGTITAAGTTAINVTGSGGTITINTATTGLTGTGDT 836
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 886 TTLNVDSLTQQADSTLNIDLSKTNGESAITADSVSLAGALNITGIGNVTDSWTPEAYTYTLIDSDSAITTDFNDLTVAGM 965
Cdd:COG3210 837 TSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGAVLATV 916
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 966 NSEDVDFLTIDGKVDEADNTHYDLTASLSWYADRDNATTDAHGTFTLSDPDGSFNVAATLTDVDDTLDPGSRWDGKSLTK 1045
Cdd:COG3210 917 TATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGI 996
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1046 EGAGTLILSGDNDYSGGT------------TINEGTLVAASTTALGTGLVDNNATLVLDVDGEVSAVGGITTHSGATTQL 1113
Cdd:COG3210 997 LVAGNSGTTASTTGGSGAivaggngvtgttGTASATGTGTAATAGGQNGVGVNASGISGGNAAALTASGTAGTTGGTAAS 1076
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1114 ALGTSLDLGDSALIQQDGSTLNVELNSDSVQPLITGGSATLGGDLVVSDASLQARASDAEFQSFKLMDMDSDISGDFTSL 1193
Cdd:COG3210 1077 NGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKVGGTTTVGATGTSTASTEAAGAGTLTGLVAVSAVAG 1156
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1194 KMNLTDQPDYLTVTGTINPEDASEYLLTEGLSWNATATSATPAHGTFTLGAGDSFEVTSVLGDKTGNGDWDGKSLTKLGA 1273
Cdd:COG3210 1157 GASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLKGGDSTGGSTTTIGTTNVTTTTTLTASDTGNTTATGGS 1236
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1274 GKLTLSGANTYTGDTNVQEGTLWLAGDGTIGEVGSQQAVNVASDATFGGSNGTTVNGKVTNEGTLVFGDSEETGAIFTLN 1353
Cdd:COG3210 1237 SAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGATATGSTVDIGSTSATSAGGSLDTTGNTAGANGATVGT 1316
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1354 GDLINMGTMTSGSSSSTPGNTLYVDGDYTGNGGSLYLNTVLGDDDSATDKLVITGDASGTTDLYINGIGDGAQTTNGIEV 1433
Cdd:COG3210 1317 GIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGATDSAAGAGSGGAAGSLAATAGAGTVLTGAGNNTGAEGT 1396
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1434 VDVGGVSTSDAFELKNEVNAGLYTYRLYWNESDNDWYLASKAQSDDDDSGGDDSDVTPSDGGDDGGNVTPPDDGGDVAPQ 1513
Cdd:COG3210 1397 NAGRDGGVTTSGTGVGNNGGVSGTTVAGTTGSSATTGTGGTGNTTGTSVAGAGGGNADASAINTGNASSLGAGGSTAGNA 1476
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1514 YRADIGAYMGNQWMARNLQMQTLYDREGSQYRNADGSVWARFKAGKAESEAVSGNIDMDSNYSQFQLGGDILAWGNGQQS 1593
Cdd:COG3210 1477 VGGAVIGGTTTGGNGAGVAGATASNGGTSTGAGGTAGGTTAEVAKASLEGGEGTYGGSSVAEAGTGGGILGAVSGAGSEG 1556
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1594 VTVGVMASYINADTDSTGNRGADGSQFTSSGNVDGYNLGVYATWFADAQTHSGAYVDSWYQYGFYNNSVESGDAGSESYD 1673
Cdd:COG3210 1557 GAAGGVTGSVGVGGTDGAGGDTGGADDTGAQAPTAGNTATLTLSLAEGTNAEYGGTTNVTSGTAGNAGATGANSNTVVTT 1636
|
1610 1620 1630 1640 1650 1660
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1674 STANAVSLETGYRYDIALSNGNTVSLTPQAQVVWQNYSADSVKDNYGTRIDGQDGDSWTT 1733
Cdd:COG3210 1637 NGGEGVLALVAGGNTTNGTTLSGAVNGAGNGWAVDLTDATLAGLGGATTAAAGNVATGDT 1696
|
|
| PL_Passenger_AT |
cd00253 |
Pertactin-like passenger domains (virulence factors) of autotransporter proteins of the type V ... |
1312-1473 |
5.21e-26 |
|
Pertactin-like passenger domains (virulence factors) of autotransporter proteins of the type V secretion system. Autotransporters are proteins used by Gram-negative bacteria to transport proteins across their outer membranes. The C-terminal (beta) domain of autotransporters forms a pore in the outer membrane through which the N-terminal passenger domain is transported. Following transport, the passenger domain is generally cleaved by an outer membrane protease with the passenger domain either remaining in contact with the surface via a noncovalent interaction with the beta domain or cleaved to release a soluble protein. These proteins are highly diverse and perform a variety of functions that promote virulence, including catalyzing proteolysis, serving as an adhesin, mediating actin-promoted motility, or serving as a cytotoxin. Proteins in this family share similarity in the C-terminal region of the passenger domain as seen in the pertactin structure P.69, a Bordetella pertussis agglutinogen responsible for human pertussis. The P.69 protein consists of a 16-stranded parallel beta-helix with a V-shaped cross-section, and is one of the largest beta-helix known to date.
Pssm-ID: 238156 [Multi-domain] Cd Length: 186 Bit Score: 106.68 E-value: 5.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1312 VNVASDATFGGSNGTTVNGKVTNEGTLVFGDS---EETGAIFTLNGDLINMGTMTSGSSSSTPGNTLYVDGDYTGNGGSL 1388
Cdd:cd00253 15 LTLGGGGALTLTGNSVWLGTLQAGGGTVSLNSnslWTLTGDSTVNGNLTNSGGTVDFGSASGAFNTLTVNGNYLGGNGTF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1389 YLNTVLGDDDSATDKLVITGDASGTTDLYINGIG-DGAQTTNGIEVVDVGGvSTSDAFELKNEVNAGLYTYRLYWNE--S 1465
Cdd:cd00253 95 VLNTDLGGDNSPTDKLVVTGNASGTTNVAVVNAGgEGASTGDGIELVEVNG-GSDAAFSLAGRVDAGAYEYTLYKGGvgN 173
|
....*...
gi 1478601329 1466 DNDWYLAS 1473
Cdd:cd00253 174 NGNWYLRS 181
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
95-1334 |
1.39e-23 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 109.47 E-value: 1.39e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 95 VSGVATVGWQPTTVTGTGLVIETSGGGADDPDGGKYVSNAISLDHYAILELTDAKITTTGIYTQGISAADGSKLTLTDST 174
Cdd:COG3210 472 VTNSAGNTTSATTLAGGGIGTVTTNATISNNAGGDANGIATGLTGITAGGGGGGNATSGGTGGDGTTLSGSGLTTTVSGG 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 175 LTIDGNFGVMTLYTGSEATLDGTIVEAANSSSAQVQQGSTLNVLDGSTITLAQGQINVVAGNTATDEGSTLNLSDSSVSS 254
Cdd:COG3210 552 ASGTTAASGSNTANTLGVLAATGGTSNATTAGNSTSATGGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGG 631
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 255 AGTMSTIQGTNKAALNLTNATITHTNASGAAVQANNATTLDIIGGNITSAGTGVYILASDARIDGATINADGDGIFITSK 334
Cdd:COG3210 632 AGLTGSAVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTG 711
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 335 RKLDGYEDLNALTVNKAQVNSDTIAlhVDTGTTINAPIVLTDSTFEApevIKLGSKVVIQANNTTLIGDVAQSDMSSSSL 414
Cdd:COG3210 712 SITVTGQIGALANANGDTVTFGNLG--TGATLTLNAGVTITSGNAGT---LSIGLTANTTASGTTLTLANANGNTSAGAT 786
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 415 SLSQGSTLTGSVDAmfttlslddTSQWNMTDPSTVGNLTNDGDITLGNASGSTGTLLTVDNTLTLQDDSQINATLDTANS 494
Cdd:COG3210 787 LDNAGAEISIDITA---------DGTITAAGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGA 857
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 495 SPIIKAANVTLGGTLNLSSTATFVAPETDEHFGSITLIDSQSAITTDFDSVTLDADTSAMPDYLTINAGVDANDNTNYEL 574
Cdd:COG3210 858 SGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTG 937
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 575 STGLSWYAGANSARAAHGTFTVDAGSTFTVTSELDETTATSNWNGSKLTKQGDGTLILSNTGNDYGDTEIDGGILAAKDA 654
Cdd:COG3210 938 AGNGTTALSGTQGNAGLSAASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVA 1017
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 655 AALGTGDVTIAESATLELSQGTLDNNVTGEGQIVKSGSDELIVTGANDYSGGTTISAGALTADHADSLGTGTIANNGVLK 734
Cdd:COG3210 1018 GGNGVTGTTGTASATGTGTAATAGGQNGVGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGI 1097
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 735 VGEGELENTLSGTGSLVKTGTGELTLSGDNDYSGGTTIDDGVLIADNADSLGTGAVANNGELQVGEGELENTLSGSGSLV 814
Cdd:COG3210 1098 TNGGATGTSGGTTTSTGGVTASKVGGTTTVGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTT 1177
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 815 KTGTGELTLNGDNSYSGGTTITGGTLIAANVNALGGGDVDNAGTLKLDAEGEFNLANVTTQSGATTELSKGTTLNVDSLT 894
Cdd:COG3210 1178 GSAINGGADSAATEGTAGTDLKGGDSTGGSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDAT 1257
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 895 QQADSTLNIDLSKTNGESAITADSVSLAGALNITGIGNVTDSWTPEAYTYTLIDSDSAITTDFNDLTVAGMNSEDVDFLT 974
Cdd:COG3210 1258 TGATAGAVSNGATSTVAGNAGATATGSTVDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVN 1337
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 975 IDGKVDEADNTHYDLTASLSWYADRDNATTDAHGTFTLSDPDGSFNVAATLTDVDDTLDPGSRWDGKSLTKEGAGTLILS 1054
Cdd:COG3210 1338 AGGGTINTTAANTGLNGGNGATDSAAGAGSGGAAGSLAATAGAGTVLTGAGNNTGAEGTNAGRDGGVTTSGTGVGNNGGV 1417
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1055 GDNDYSGGTTINEGTLVAASTTALGTGLVDNNATLVLDVDGEVSAVGGITTHSGATTQLALGTSLDLGDSALIQQDGSTL 1134
Cdd:COG3210 1418 SGTTVAGTTGSSATTGTGGTGNTTGTSVAGAGGGNADASAINTGNASSLGAGGSTAGNAVGGAVIGGTTTGGNGAGVAGA 1497
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1135 NVELNSDSVQPLITGGSATLGGDLVVSDASLQARASDAEFQSFKLMDMDSDISGDFTSLKMNLTDQPDYLTVTGTINPED 1214
Cdd:COG3210 1498 TASNGGTSTGAGGTAGGTTAEVAKASLEGGEGTYGGSSVAEAGTGGGILGAVSGAGSEGGAAGGVTGSVGVGGTDGAGGD 1577
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1215 ASEYLLTEGLSWNATATSATPAHGTFTLGAGDSFEVTSVLGDKTGNGDWDGKSLTKLGAGKLTLSGANTYTGDTNVQEGT 1294
Cdd:COG3210 1578 TGGADDTGAQAPTAGNTATLTLSLAEGTNAEYGGTTNVTSGTAGNAGATGANSNTVVTTNGGEGVLALVAGGNTTNGTTL 1657
|
1210 1220 1230 1240
....*....|....*....|....*....|....*....|
gi 1478601329 1295 LWLAGDGTIGEVGSQQAVNVASDATFGGSNGTTVNGKVTN 1334
Cdd:COG3210 1658 SGAVNGAGNGWAVDLTDATLAGLGGATTAAAGNVATGDTA 1697
|
|
| AC_1 |
pfam18883 |
Autochaperone Domain Type 1; This entry represents the autochaperone domain of type 1 (AC-1) ... |
1373-1460 |
6.89e-22 |
|
Autochaperone Domain Type 1; This entry represents the autochaperone domain of type 1 (AC-1) in the Type Va Secretion System (T5aSS). Autotransporters (ATs) belong to a family of modular proteins secreted by the Type V, subtype a, secretion system (T5aSS) and considered as an important source of virulence factors in lipopolysaccharidic diderm bacteria (archetypical Gram-negative bacteria). The AC of type 1 with beta-fold appears as a prevalent and conserved structural element exclusively associated to beta-helical AT passenger.
Pssm-ID: 465898 [Multi-domain] Cd Length: 114 Bit Score: 92.29 E-value: 6.89e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1373 NTLYVDGDYTGNGGSLYLNTVLGDDDSATDKLVITGD-ASGTTDLYINGI-GDGAQTT-NGIEVVDVGGVSTSDAFELKN 1449
Cdd:pfam18883 24 KTLTVDGDYTGNDGTLALNTYLGGDGSPSDKLVIDGGtASGTTNLRINNTgGPGALTTnDGILVVDVGGTTSDGAFRLAG 103
|
90
....*....|.
gi 1478601329 1450 EVNAGLYTYRL 1460
Cdd:pfam18883 104 RAVAGPYEYLL 114
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
58-1142 |
1.82e-21 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 102.54 E-value: 1.82e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 58 LAMADNQVSYADAQTHVLDASTPPMSYSGTDEGSALYVSGVATVGWQPTTVTGTGLVIETSGGGADDPDGGKYVSNAISL 137
Cdd:COG3210 596 SGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGSAVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGGTT 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 138 DHYAILELTDAKITTTGIYTQGISAADGSKLTLTDSTLTIDGNFG-----------VMTLYTGSEATLDGTIVEAANSSS 206
Cdd:COG3210 676 GTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSITVTGQIGalanangdtvtFGNLGTGATLTLNAGVTITSGNAG 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 207 AQVQQGSTLNVLDGSTITLAQGQINVVAGNTATDEGSTLNlsdsSVSSAGTMSTIQGTNKAALNLTNATITHTNASGAAV 286
Cdd:COG3210 756 TLSIGLTANTTASGTTLTLANANGNTSAGATLDNAGAEIS----IDITADGTITAAGTTAINVTGSGGTITINTATTGLT 831
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 287 QANNAT------TLDIIGGNITSAGTGVYILASDARIDGATINADGDGIFITSKRKLDGYEDLNALTVNKAQVNSDTIAL 360
Cdd:COG3210 832 GTGDTTsgaggsNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGA 911
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 361 HVDTGTTINAPIVLTDSTFEAPEVIKLGSKVVIQANNTTLIGDVAQSDMSSSSLSLSQGSTLTGSVDAMFTTLSLDDTSQ 440
Cdd:COG3210 912 VLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVI 991
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 441 WNMTDPSTVGNLTNDGDITLGNASGSTGTLLTVDNTLTLQDDSQINATLDTANSSPIIKAANVTLGGTLNLSSTATFVAP 520
Cdd:COG3210 992 AATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNGVGVNASGISGGNAAALTASGTAGTTG 1071
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 521 ETDEHFGSITLIDSQSAITTDFDSVTLDADTSAMPDYLTINAGVDANDNTNYELSTGLSWYAGANSARAAHGTFTVDAGS 600
Cdd:COG3210 1072 GTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKVGGTTTVGATGTSTASTEAAGAGTLTGLVAV 1151
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 601 TFTVTSELDETTATSNWNGSKLTKQGDGTLILSNTGNDYGDTEIDGGILAAKDAAALGTGDVTIAESATLELSQGTLDNN 680
Cdd:COG3210 1152 SAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLKGGDSTGGSTTTIGTTNVTTTTTLTASDTGNTT 1231
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 681 VTGEGQIVKSGSDELIVTGANDYSGGTTISAGALTADHADSLGTGTIANNGVLKVGEGELENTLSGTGSLVKTGTGELTL 760
Cdd:COG3210 1232 ATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGATATGSTVDIGSTSATSAGGSLDTTGNTAGANG 1311
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 761 SGDNDYSGGTTIDDGVLIADNADSLGTGAVANNGELQVGEGELENTLSGSGSLVKTGTGELTLNGDNSYSGGTTITGGTL 840
Cdd:COG3210 1312 ATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGATDSAAGAGSGGAAGSLAATAGAGTVLTGAGNNT 1391
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 841 IAANVNALGGGDVDNAGTLKLDAEGEFNLANVTTQSGATTELSKGTTLNVDSLTQQADSTLNIDLSKTNGESAITADSVS 920
Cdd:COG3210 1392 GAEGTNAGRDGGVTTSGTGVGNNGGVSGTTVAGTTGSSATTGTGGTGNTTGTSVAGAGGGNADASAINTGNASSLGAGGS 1471
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 921 LAGALNITGIGNVTDSWTPEAYTYTLIDSDSAITTDFNDLTVAGMNSEDVDFLTIDGKVDEADNTHYDLTASLSWYADRD 1000
Cdd:COG3210 1472 TAGNAVGGAVIGGTTTGGNGAGVAGATASNGGTSTGAGGTAGGTTAEVAKASLEGGEGTYGGSSVAEAGTGGGILGAVSG 1551
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1001 NATTDAHGTFTLSDPDGSFNVAATLTDVDDTLDPGSRWDGKSLTKEGAGTLILSGDNDYSGGTTINEGTLVAASTTALGT 1080
Cdd:COG3210 1552 AGSEGGAAGGVTGSVGVGGTDGAGGDTGGADDTGAQAPTAGNTATLTLSLAEGTNAEYGGTTNVTSGTAGNAGATGANSN 1631
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1478601329 1081 GLVDNNATLVLDVDGEVSAVGGITTHSGATTQLALGTSLDLGDSALIQQDGSTLNVELNSDS 1142
Cdd:COG3210 1632 TVVTTNGGEGVLALVAGGNTTNGTTLSGAVNGAGNGWAVDLTDATLAGLGGATTAAAGNVAT 1693
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
150-1063 |
9.26e-19 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 93.68 E-value: 9.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 150 ITTTGIYTQGISAADGSKLTLTDSTLTIDGNFGVMTL---YTGSEATLDGTIVEAANSSSAQVQQGSTLNVLDGSTITLA 226
Cdd:COG3210 787 LDNAGAEISIDITADGTITAAGTTAINVTGSGGTITIntaTTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGAN 866
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 227 QGQINVVAGNTATDEGSTLNLSDSSVSSAGTMSTIQGTNKAALNLTNATITHTNASGAAVQANNATTLDIIGGNITSAGT 306
Cdd:COG3210 867 SGSLAATAASITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALS 946
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 307 GVYILASDARIDGATINADGDGIFITSKRKLDGYEDLNALTVNKAQVNSDTIALHVDTGTTINAPIVLTDSTFEAPEVIK 386
Cdd:COG3210 947 GTQGNAGLSAASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTT 1026
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 387 LGSKVVIQANNTTLIGDVAQSDMSSSSLSLSQGSTLTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLTNDGDITLGNASGS 466
Cdd:COG3210 1027 GTASATGTGTAATAGGQNGVGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTS 1106
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 467 TGTLLTVDNTLTLQDDSQINATLDTANSSPIIKAANVTLGGTLNLSSTATFVAPETDEHFGSITLIDSQSAITTDFDSVT 546
Cdd:COG3210 1107 GGTTTSTGGVTASKVGGTTTVGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGAD 1186
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 547 LDADTSAMPDYLTINAGVDANDNTNYELSTGLSWYAGANSARAAHGTFTVDAGSTFTVTSELDETTATSNWNGSKLTKQG 626
Cdd:COG3210 1187 SAATEGTAGTDLKGGDSTGGSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVS 1266
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 627 DGTLILSNTGNDYGDTEIDGGILAAKDAAALGTGDVTIAESATLELSQGTLDNNVTGEGQIVKSGSDELIVTGANDYSGG 706
Cdd:COG3210 1267 NGATSTVAGNAGATATGSTVDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTT 1346
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 707 TTISAGALTADHADSLGTGTIANNGVLKVGEGELENTLSGTGSLVKTGTGELTLSGDNDYSGGTTIDDGVLIADNADSLG 786
Cdd:COG3210 1347 AANTGLNGGNGATDSAAGAGSGGAAGSLAATAGAGTVLTGAGNNTGAEGTNAGRDGGVTTSGTGVGNNGGVSGTTVAGTT 1426
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 787 TGAVANNGELQVGEGELENTLSGSGSLVKTGTGELTLNGDNSYSGGTTITGGTLIAANVNALGGGDVDNAGTLKLDAEGE 866
Cdd:COG3210 1427 GSSATTGTGGTGNTTGTSVAGAGGGNADASAINTGNASSLGAGGSTAGNAVGGAVIGGTTTGGNGAGVAGATASNGGTST 1506
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 867 FNLANVTTQSGATTELSKGTTLNVDSLTQQADSTLNIDLSKTNGESAITADSVSLAGALNITGIGNVTDSwtpeaYTYTL 946
Cdd:COG3210 1507 GAGGTAGGTTAEVAKASLEGGEGTYGGSSVAEAGTGGGILGAVSGAGSEGGAAGGVTGSVGVGGTDGAGG-----DTGGA 1581
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 947 IDSDSAITTDFNDLTVAGMNSEDVDFLTIDGKVDEADNTHYDLTASLSWYADRDNATTDAHGTFTLSDPDGSFNVAATLT 1026
Cdd:COG3210 1582 DDTGAQAPTAGNTATLTLSLAEGTNAEYGGTTNVTSGTAGNAGATGANSNTVVTTNGGEGVLALVAGGNTTNGTTLSGAV 1661
|
890 900 910
....*....|....*....|....*....|....*..
gi 1478601329 1027 DVDDTLDPGSRWDGKSLTKEGAGTLILSGDNDYSGGT 1063
Cdd:COG3210 1662 NGAGNGWAVDLTDATLAGLGGATTAAAGNVATGDTAP 1698
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
922-1826 |
2.28e-12 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 72.50 E-value: 2.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 922 AGALNITGIGNVTDSWTPEAYTYTLIDSDSAITTDFNDLTVAGMNSEDVDFLTIDGKVDEADNTHYDLTASLSWYADRDN 1001
Cdd:COG4625 2 GGGGGGGGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1002 ATTDAHGTFTLSDPDGSFNVAATLTDVDDTLDPGSRWDGKSLTKEGAGTLILSGDNDYSGGTTINEGTLVAASTTALGTG 1081
Cdd:COG4625 82 GGGGGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1082 LVDNNATLVLDVDGEVSAVGGITTHSGATTQLALGTSLDLGDSALIQQDGSTLNVELNSDSVqplITGGSATLGGDLVVS 1161
Cdd:COG4625 162 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGG---GGGGGGGGGGGGGGG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1162 DASLQARASDAEFQSFKLMDMDSDISGDFTSLKMNLTDQPDYLTVTGTINPEDASEYLLTEGLSWNATATSATPAHGTFT 1241
Cdd:COG4625 239 GGGGGGGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1242 LGAGDSFEVTSVLGDKTGNGDWDGKSLTKLGAGKLTLSGANTYTGDTNVQEGTLWLAGDGTIGEVGSQQAVNVASDATFG 1321
Cdd:COG4625 319 GGGGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGG 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1322 GSNGTTVNGKVTNEGTLVFGDSEETGAIFTLNGDLINMGTMTSGSssstpGNTLYVDGDYTGNGGSLYLNTVLGDDDSAT 1401
Cdd:COG4625 399 GGGGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGG-----GATGGGGGGGGGAGGSGGGAGAGGGSGSGA 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1402 DKLVITGDASGTTDLYINGIGDGAQTTNGIEVVDVGGVSTSDAFELKNEVNAGLYTYRLYWNESDNDWYLASKAQSDDDD 1481
Cdd:COG4625 474 GTLTLTGNNTYTGTTTVNGGGNYTQSAGSTLAVEVDAANSDRLVVTGTATLNGGTVVVLAGGYAPGTTYTILAVAAALDA 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1482 SGGDDSDVTPSDGGDDGGNVTPPDDGGDVAPQYRADIGAYMGNQWMA-----RNLQMQTLYDREGSQYRNADGSVWARFK 1556
Cdd:COG4625 554 LAGNGDLSALYNALAALDAAAARAALDQLSGEIHASAAAALLQASRAlrdalSNRLRALRGAGAAGDAAAEGWGVWAQGF 633
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1557 AGKAESEAVSGNIDMDSNYSQFQLGGDILAWGNgqqsVTVGVMASYINADTDSTGNRgadgsqftSSGNVDGYNLGVYAT 1636
Cdd:COG4625 634 GSWGDQDGDGGAAGYDSSTGGLLVGADYRLGDN----WRLGVALGYSRSDVDVDDRG--------SSGDSDSYHLGLYGG 701
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1637 WFADAQTHSGAYVDSWYQYGFYNNSVESGDAGSESYDSTANAVSLETGYRYDIALSNgntVSLTPQAQVVWQNYSADSVK 1716
Cdd:COG4625 702 YQFGALYLDGGLGYGWNDYDTDRTIAFGGLSRTATADYDGDTASAFLEAGYRFDLGG---LTLTPFAGLAYVRLRTDGFT 778
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1717 DNYGT---RIDGQDGDSWTTRLGLRVDGKLYKGSRTVIQPFAEANWLHTSDDVSVSFDDA----------TVKQDLPANR 1783
Cdd:COG4625 779 ETGGAaalSVDSQSTDSLRSTLGLRASRTFSLGGGVTLTPSGRLGWRHEFGDDDPSTTASfagapgaaftVAGAPLARDA 858
|
890 900 910 920
....*....|....*....|....*....|....*....|...
gi 1478601329 1784 AELKVGLQADIDKQWSVRAQVAGQTGSnDFGDLNGSLNLRYNW 1826
Cdd:COG4625 859 LVLGAGLSARLSDGLSLGLGYDGEFGS-GYTDHGGSAGLRYRF 900
|
|
| PRK14849 |
PRK14849 |
autotransporter barrel domain-containing lipoprotein; |
632-930 |
1.54e-10 |
|
autotransporter barrel domain-containing lipoprotein;
Pssm-ID: 184851 [Multi-domain] Cd Length: 1806 Bit Score: 66.68 E-value: 1.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 632 LSNTGNDY-GDTEIDGGILAAKDAAALG-TGDVTIAESATLELS--------------------QGTLDNNVTGEGQIVK 689
Cdd:PRK14849 1034 LSNGQNDYqGATYVQMGTLRTDADGALGnTRELNISNAAIVDLNgstqtvetftgqmgstvlfkEGALTVNKGGISQGEL 1113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 690 SGSDELIVTGAN--------DYSGGTTISAGA-LTADHADSLGTGTIANNGVLKVGE--GELENTLSGTGSLVKTGTGEL 758
Cdd:PRK14849 1114 TGGGNLNVTGGTlaieglnaRYNALTSISPNAeVSLDNTQGLGRGNIANDGLLTLKNvtGELRNSISGKGIVSATARTDV 1193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 759 TLSGDND-YSGGTTIDDGVLIADNAD-SLGTGAVANNGELQVGEGE---LENTLSGSGSLVKTGTGELTLNGD------- 826
Cdd:PRK14849 1194 ELDGDNSrFVGQFNIDTGSALSVNEQkNLGDASVINNGLLTISTERswaMTHSISGSGDVTKLGTGILTLNNDsaayqgt 1273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 827 ----------------NSYSGGTTITGGTLIAANVNALG-----------------GGDVDNAGTLKLDAEGEfNLANVT 873
Cdd:PRK14849 1274 tdivggeiafgsdsaiNMASQHINIHNSGVMSGNVTTAGdvnvmpggtlrvakttiGGNLENGGTVQMNSEGG-KPGNVL 1352
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1478601329 874 TQSGATTELSKGTTLNVDSLTQQADSTLNIDLSKTNGESAITADSVSLAGALNITGI 930
Cdd:PRK14849 1353 TVNGNYTGNNGLMTFNATLGGDNSPTDKMNVKGDTQGNTRVRVDNIGGVGAQTVNGI 1409
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
575-1114 |
7.15e-09 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 60.95 E-value: 7.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 575 STGLSWYAGANSARAAHGTFTVDAGSTFTVTSELDETTATSNWNGSKLTKQGDGTLILSNTGNDYGDTEIDGGILAAKDA 654
Cdd:COG4625 2 GGGGGGGGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 655 AALGTGDVTIAESATLELSQGTLDNNVTGEGQIVKSGSDELIVTGANDYSGGTTISAGALTADHADSLGTGTIANNGVLK 734
Cdd:COG4625 82 GGGGGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 735 VGEGELENTLSGTGSLVKTGTGELTLSGDNDYSGGTTIDDGVLIADNADSLGTGAVANNGELQVGEGELENTLSGSGSLV 814
Cdd:COG4625 162 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 815 KTGTGELTLNGDNSYSGGTTITGGTLIAANVNALGGGDVDNAGTLKLDAEGEFNLANVTTQSGATTELSKGTTLNVDSLT 894
Cdd:COG4625 242 GGGGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 895 QQADSTLNIDLSKTNGESAITADSVSLAGALNITGIGNVTDSWTPEAYTYTLIDSDSAITTDFNDLTVAGMNSEDVDFLT 974
Cdd:COG4625 322 GGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGG 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 975 IDGKVDEADNTHYDLTASLSWYADRDNATTDAHGTFTLSDPDGSFNVAATLTDVDDTLDPGSRWDGksLTKEGAGTLILS 1054
Cdd:COG4625 402 GGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGG--GSGSGAGTLTLT 479
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1055 GDNDYSGGTTINEGTLVAASTTALGTGLVDNNATLVLDVDGEVSAVGGITTHSGATTQLA 1114
Cdd:COG4625 480 GNNTYTGTTTVNGGGNYTQSAGSTLAVEVDAANSDRLVVTGTATLNGGTVVVLAGGYAPG 539
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
419-938 |
1.30e-07 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 56.71 E-value: 1.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 419 GSTLTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLTNDGDITLGNASGSTGTLLTVDNTLTLQDDSQINATLDTANSSPII 498
Cdd:COG4625 21 GAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGTGGVGGGGGGG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 499 KAANVTLGGTLNLSSTATFVAPETDEHFGSITLIDSQSAITTDFDSVTLDADTSAMPDYLTINAGVDANDNTNYELSTGL 578
Cdd:COG4625 101 GGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAGGGGGGGGGGGGGGGGGGGG 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 579 SWYAGANSARAAHGTFTVDAGSTFTVTSELDETTAT-SNWNGSKLTKQGDGTLILSNTGNDYGDTEIDGGILAAKDAAAL 657
Cdd:COG4625 181 GGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGgGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGNGG 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 658 GTGDVTIAESATLELSQGTLDNNVTGEGQIVKSGSDELIVTGANDYSGGTTISAGALTADHADSLGTGTIANNGVLKVGE 737
Cdd:COG4625 261 GGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGS 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 738 GELENTLSGTGSLVKTGTGELTLSGDNDYSGGTTIDDGVLIADNADSLGTGAVANNGELQVGEGELENTLSGSGSLVKTG 817
Cdd:COG4625 341 GGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGGGGGAGGTGGGGAGGGGGAA 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 818 TGELTLNGDNSYSGGTTITGGTLIAANVNALGGGDVDNAGTLKLDAEGEFNLANVTTQSGATTELSKGTTLNVDSLTQQA 897
Cdd:COG4625 421 GGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGNNTYTGTTTVNGGGNYTQSA 500
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1478601329 898 DSTLNIDLSKTNGESAITADSVSLAGALNITGIGNVTDSWT 938
Cdd:COG4625 501 GSTLAVEVDAANSDRLVVTGTATLNGGTVVVLAGGYAPGTT 541
|
|
| PATR |
pfam12951 |
Passenger-associated-transport-repeat; This Autotransporter-associated beta strand repeat ... |
1043-1070 |
1.59e-07 |
|
Passenger-associated-transport-repeat; This Autotransporter-associated beta strand repeat model represents a core 32-residue region of a class of bacterial protein repeat found in one to 30 copies per protein. Most proteins with a copy of this repeat have domains associated with membrane autotransporters (pfam03797). The repeats occur with a periodicity of 60 to 100 residues. A pattern of sequence conservation is that every second residue is well-conserved across most of the domain. These repeats as likely to have a beta-helical structure. This repeat plays a role in the efficient transport of autotransporter virulence factors to the bacterial surface during growth and infection. The repeat is always associated with the passenger domain of the autotransporter. For these reasons it has been coined the Passenger-associated Transport Repeat (PATR). The mechanism by which the PATR motif promotes transport is uncertain but it is likely that the conserved glycines (see HMM Logo) are required for flexibility of folding and that this folding drives secretion. Autotransporters that contain PATR(s) associate with distinct virulence traits such as subtilisin (S8) type protease domains and polymorphic outer-membrane protein repeats, whilst SPATE (S6) type protease and lipase-like autotransporters do not tend to contain PATR motifs.
Pssm-ID: 463760 [Multi-domain] Cd Length: 28 Bit Score: 48.88 E-value: 1.59e-07
10 20
....*....|....*....|....*...
gi 1478601329 1043 LTKEGAGTLILSGDNDYSGGTTINEGTL 1070
Cdd:pfam12951 1 LTKTGAGTLTLTGANTYTGGTTVNAGTL 28
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
395-926 |
1.67e-07 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 56.33 E-value: 1.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 395 ANNTTLIGDVAQSDMSSSSLSLSQGSTLTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLTNDGDITLGNASGSTGTLLTVD 474
Cdd:COG4625 50 AGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGA 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 475 NTLTLQDDSQINATLDTANSSPIIKAANVTLGGTLNLSSTATFVAPETDEHFGSITLIDSQSAITTDFDSVTLDADTSAM 554
Cdd:COG4625 130 GGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGG 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 555 PDYLTINAGVDANDNTNYELSTGLSWYAGANSARAAHGTFTVDAGSTFTVTSELDETTATSNWNGSKLTKQGDGTLILSN 634
Cdd:COG4625 210 GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGG 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 635 TGNDYGDTEIDGGILAAKDAAALGTGDVTIAESATLELSQGTLDNNVTGEGQIVKSGSDELIVTGANDYSGGTTISAGAL 714
Cdd:COG4625 290 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGG 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 715 TADHADSLGTGTIANNGVLKVGEGELENTLSGTGSLVKTGTGELTLSGDNDYSGGTTIDDGVLIADNADSLGTGAVANNG 794
Cdd:COG4625 370 GGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGGGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGG 449
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 795 ELQVGEGELENTLSGSGSLVKTGTGELTLNGDNSYSGGTTITGGTLIAANVNALGGGDVDNAGTLKLDAEGEFNLANVTT 874
Cdd:COG4625 450 GGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGNNTYTGTTTVNGGGNYTQSAGSTLAVEVDAANSDRLVVTGTATLNGGTV 529
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 1478601329 875 QSGATTeLSKGTTLNVDSLTQQADSTLNIDLSKTNGESAITADSVSLAGALN 926
Cdd:COG4625 530 VVLAGG-YAPGTTYTILAVAAALDALAGNGDLSALYNALAALDAAAARAALD 580
|
|
| Hia |
COG5295 |
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, ... |
216-830 |
4.27e-07 |
|
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444098 [Multi-domain] Cd Length: 785 Bit Score: 55.16 E-value: 4.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 216 NVLDGSTITLAQGQINVVAGNTATDEGSTLNLSDSSVSSAGTMSTIQGTNKAALNLTNATITHTNASGAAVQANNATTLD 295
Cdd:COG5295 4 NAGAVAAGTALTTVASGASTTASGSSATVTSAAQSTGSAATSSGSSSAAGGSGSTSSLTAAAATAGAGSGGTSATAASSV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 296 IIGGNiTSAGTGVYILASDARIDGATINADGDGIFITSKRKLDGYEDLNALTVNKAQVNSDTIALHVDTGTTINAPIVLT 375
Cdd:COG5295 84 ASGGA-SAATAASTGTGNTAGTAATVAGAASSGSATNAGASAGASAAAAAGSTAAAGGAAASTGGSSAAGGSNTATATGS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 376 DSTFEAPEVIKLGSKVVIQANNTTLIGDVAQSDMSSSSLSLSQGSTLTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLTND 455
Cdd:COG5295 163 STANAATAAAGATSTSASGSSSGASGAAAASAATGASAGGTASAAASASSSATGTSASVGVNAGAATGSAASAGGSASAG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 456 GDITLGNASGSTGTLLTVDNTLTLQDDSQINATLDTANSSPIIKAANVTLGGTLNLSSTATFVAPETDehfGSITLIDSQ 535
Cdd:COG5295 243 AASGNATTASASSVSGSAVAAGTASTATTASTTAASGAAGTATAAAGGDAAAAGSASSTGAANATAGG---GNAGSGGGG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 536 SAITTDFDSVTLDADTSAMPDYLTINAGVDANDNTNYELSTGLSWYAGANSARAAHGTFTVDAGSTFTVTSELDETTATS 615
Cdd:COG5295 320 AAALGSAGGSSGVGTASGASAAAATNDGTANGAGTSAAADATSGGGAGGGGAAATSSSGGSATAAGNAAGAAGAGSAGSG 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 616 NWNGSKLTKQGDGTLILSNTGNDYGDTEIDGGILAAKDAAALGTGDVTIAESATLELSQGTLDNNVTGEGQIVKSGSDEL 695
Cdd:COG5295 400 GSSTGASAGGGASAAGGAAAGSAAAGTSSNTSAVGASNGASGTSSSASSAGAAGGGTAGAGGAANVGAATTAASAAATAA 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 696 IVTGANDYSGGTTISAGALTADHADSLGTGTIANNGVLKVGEGELENTLSGTGSLVKTGTGELTLSGDNDYSGGTTIDDG 775
Cdd:COG5295 480 AATSSAAIAGATATGAGAAAGGAGAGAAGGAGSAAAGGAANAAAASGATATAGSAGGGAAAAAGGGSTTAATGTNSVAVG 559
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1478601329 776 VLIADNADSLGTGAVAN---NGELQVGEGELENTLSGSGSLVKTGTGELTLNGDNSYS 830
Cdd:COG5295 560 NNTATGANSVALGAGSVasgANSVSVGAAGAENVAAGATDTDAVNGGGAVATGDNSVA 617
|
|
| PATR |
pfam12951 |
Passenger-associated-transport-repeat; This Autotransporter-associated beta strand repeat ... |
1268-1295 |
1.12e-06 |
|
Passenger-associated-transport-repeat; This Autotransporter-associated beta strand repeat model represents a core 32-residue region of a class of bacterial protein repeat found in one to 30 copies per protein. Most proteins with a copy of this repeat have domains associated with membrane autotransporters (pfam03797). The repeats occur with a periodicity of 60 to 100 residues. A pattern of sequence conservation is that every second residue is well-conserved across most of the domain. These repeats as likely to have a beta-helical structure. This repeat plays a role in the efficient transport of autotransporter virulence factors to the bacterial surface during growth and infection. The repeat is always associated with the passenger domain of the autotransporter. For these reasons it has been coined the Passenger-associated Transport Repeat (PATR). The mechanism by which the PATR motif promotes transport is uncertain but it is likely that the conserved glycines (see HMM Logo) are required for flexibility of folding and that this folding drives secretion. Autotransporters that contain PATR(s) associate with distinct virulence traits such as subtilisin (S8) type protease domains and polymorphic outer-membrane protein repeats, whilst SPATE (S6) type protease and lipase-like autotransporters do not tend to contain PATR motifs.
Pssm-ID: 463760 [Multi-domain] Cd Length: 28 Bit Score: 46.57 E-value: 1.12e-06
10 20
....*....|....*....|....*...
gi 1478601329 1268 LTKLGAGKLTLSGANTYTGDTNVQEGTL 1295
Cdd:pfam12951 1 LTKTGAGTLTLTGANTYTGGTTVNAGTL 28
|
|
| autotrns_rpt |
TIGR02601 |
autotransporter-associated beta strand repeat; This model represent a core 32-residue region ... |
1042-1072 |
1.70e-06 |
|
autotransporter-associated beta strand repeat; This model represent a core 32-residue region of a class of bacterial protein repeat found in one to 30 copies per protein. Most proteins with a copy of this repeat have domains associated with membrane autotransporters (pfam03797, TIGR01414). The repeats occur with a periodicity of 60 to 100 residues. A pattern of sequence conservation is that every second residue is well-conserved across most of the domain. pfam05594 is based on a longer, much more poorly conserved multiple sequence alignment and hits some of the same proteins as this model with some overlap between the hit regions of the two models. It describes these repeats as likely to have a beta-helical structure. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274223 [Multi-domain] Cd Length: 32 Bit Score: 45.87 E-value: 1.70e-06
10 20 30
....*....|....*....|....*....|.
gi 1478601329 1042 SLTKEGAGTLILSGDNDYSGGTTINEGTLVA 1072
Cdd:TIGR02601 1 GLTKTGAGTLTLSGANTYTGGTTVNAGTLQV 31
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
220-712 |
3.35e-06 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 52.09 E-value: 3.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 220 GSTITLAQGQINVVAGNTATDEGSTLNLSDSSVSSAGTMSTIQGTNKAALNLTNATITHTNASGAAVQANNATTLDIIGG 299
Cdd:COG4625 4 GGGGGGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGGGG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 300 NITSAGTGVYILASDARIDGATINADGDGIFITSKRKLDGYEDLNALTVNKAQVNSDTIALHVDTGTTINAPIVLTDSTF 379
Cdd:COG4625 84 GGGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAGGG 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 380 EAPEVIKLGSKVVIQANNTTLIGDVAQSDMSSSSLSLSQGSTLTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLTNDGDIT 459
Cdd:COG4625 164 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 460 LGNASGSTGTLLTVDNTLTLQDDSQINATLDTANSSPIIKAANVTLGGTLNLSSTATFVAPETDEHFGSITLIDSQSAIT 539
Cdd:COG4625 244 GGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 540 TDFDSVTLDADTSAMPDYLTINAGVDANDNTNyelSTGLSWYAGANSARAAHGTFTVDAGSTFTVTSELDETTATSNWNG 619
Cdd:COG4625 324 GGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGA---GGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 620 SKLTKQGDGTLILSNTGNDYGDTEIDGGILAAKDAAALGTGDVTIAESATLELSQGTLDNNVTGEGQIVKSGSDELIVTG 699
Cdd:COG4625 401 GGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTG 480
|
490
....*....|...
gi 1478601329 700 ANDYSGGTTISAG 712
Cdd:COG4625 481 NNTYTGTTTVNGG 493
|
|
| Hia |
COG5295 |
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, ... |
364-968 |
3.65e-06 |
|
Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444098 [Multi-domain] Cd Length: 785 Bit Score: 52.08 E-value: 3.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 364 TGTTINAPIVLTDSTFEAPEVIKLGSKVVIQANNTTLIGDVAQSDMSSSSLSLSQGSTLTGSVDAMFTTLSLDDTS---Q 440
Cdd:COG5295 16 TVASGASTTASGSSATVTSAAQSTGSAATSSGSSSAAGGSGSTSSLTAAAATAGAGSGGTSATAASSVASGGASAAtaaS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 441 WNMTDPSTVGNLTNDGDITLGNASGSTGTLLTVDNTLTLQDDSQINATLDTANSSPIIKAANVTLGGTLNLSSTATFVAP 520
Cdd:COG5295 96 TGTGNTAGTAATVAGAASSGSATNAGASAGASAAAAAGSTAAAGGAAASTGGSSAAGGSNTATATGSSTANAATAAAGAT 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 521 ETDEHFGSITLIDSQSAITTDFDSVTLDADTSAMPDYLTINAGVDANDNTNYELSTGLSWYAGANSARAAHGTFTVDAGS 600
Cdd:COG5295 176 STSASGSSSGASGAAAASAATGASAGGTASAAASASSSATGTSASVGVNAGAATGSAASAGGSASAGAASGNATTASASS 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 601 TFTVTSELDETTATSNWNGSKLTKQGDGTLILSNTGNDYGDTEIDGGILAAKDAAALGTGDVTIAESATLELSQGTLDNN 680
Cdd:COG5295 256 VSGSAVAAGTASTATTASTTAASGAAGTATAAAGGDAAAAGSASSTGAANATAGGGNAGSGGGGAAALGSAGGSSGVGTA 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 681 VTGEGQIVKSGSDELIVTGANDYSGGTTISAGALTADHADSLGTGTIANNGVLKVGEGELENTLSGTGSLVKTGTGELTL 760
Cdd:COG5295 336 SGASAAAATNDGTANGAGTSAAADATSGGGAGGGGAAATSSSGGSATAAGNAAGAAGAGSAGSGGSSTGASAGGGASAAG 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 761 SGDNDYSGGTTIDDGVLIADNADSLGTGAVANNGELQVGEGELENTLSGSGSLVKTGTGELTLNGDNSYSGGTTITGGTL 840
Cdd:COG5295 416 GAAAGSAAAGTSSNTSAVGASNGASGTSSSASSAGAAGGGTAGAGGAANVGAATTAASAAATAAAATSSAAIAGATATGA 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 841 IAANVNALGGGDVDNAGTLKLDAEGEFNLANVTTQSGATTELSKGTTLNVDSLTQQADSTLNIDLSKTNGESAITADSVS 920
Cdd:COG5295 496 GAAAGGAGAGAAGGAGSAAAGGAANAAAASGATATAGSAGGGAAAAAGGGSTTAATGTNSVAVGNNTATGANSVALGAGS 575
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1478601329 921 LAGALNITGIGNVTDSWTPEAYTYTLIDSDSAITTDFNDLTVAGMNSE 968
Cdd:COG5295 576 VASGANSVSVGAAGAENVAAGATDTDAVNGGGAVATGDNSVAVGNNAQ 623
|
|
| PATR |
pfam12951 |
Passenger-associated-transport-repeat; This Autotransporter-associated beta strand repeat ... |
750-777 |
4.32e-06 |
|
Passenger-associated-transport-repeat; This Autotransporter-associated beta strand repeat model represents a core 32-residue region of a class of bacterial protein repeat found in one to 30 copies per protein. Most proteins with a copy of this repeat have domains associated with membrane autotransporters (pfam03797). The repeats occur with a periodicity of 60 to 100 residues. A pattern of sequence conservation is that every second residue is well-conserved across most of the domain. These repeats as likely to have a beta-helical structure. This repeat plays a role in the efficient transport of autotransporter virulence factors to the bacterial surface during growth and infection. The repeat is always associated with the passenger domain of the autotransporter. For these reasons it has been coined the Passenger-associated Transport Repeat (PATR). The mechanism by which the PATR motif promotes transport is uncertain but it is likely that the conserved glycines (see HMM Logo) are required for flexibility of folding and that this folding drives secretion. Autotransporters that contain PATR(s) associate with distinct virulence traits such as subtilisin (S8) type protease domains and polymorphic outer-membrane protein repeats, whilst SPATE (S6) type protease and lipase-like autotransporters do not tend to contain PATR motifs.
Pssm-ID: 463760 [Multi-domain] Cd Length: 28 Bit Score: 44.64 E-value: 4.32e-06
10 20
....*....|....*....|....*...
gi 1478601329 750 LVKTGTGELTLSGDNDYSGGTTIDDGVL 777
Cdd:pfam12951 1 LTKTGAGTLTLTGANTYTGGTTVNAGTL 28
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
549-1088 |
4.73e-06 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 51.70 E-value: 4.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 549 ADTSAMPDYLTINAGVDANDNTNYELSTGLSWYAGANSARAAHGTFTVDAGSTFTVTSELDETTATSNWNGSKLTKQGDG 628
Cdd:COG4625 4 GGGGGGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGGGG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 629 TLILSNTGNDYGDTEIDGGILAAKDAAALGTGDVTIAESATLelSQGTLDNNVTGEGQIVKSGSDELIVTGANDYSGGTT 708
Cdd:COG4625 84 GGGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGG--AGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 709 ISAGALTADHADSLGTGTIANNGVLKVGEGELENTLSGTGSLVKTGTGELTLSGDNDYSGGTTIDDGVLIADNADSLGTG 788
Cdd:COG4625 162 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 789 AVANNGELQVGEGELENTLSGSGSLVKTGTGELTLNGDNSYSGGTTITGGTLIAANVNALGGGDVDNAGTLKLDAEGEFN 868
Cdd:COG4625 242 GGGGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 869 LANVTTQSGATTELSKGTTLNVDSLTQQADSTLNIDLSKTNGESAITADSVSLAGALNITGIGNVTDSWTPEAYTYTLID 948
Cdd:COG4625 322 GGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGG 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 949 SDSAITTDFNDLTVAGMNSEDVDFLTIDGKVDEADNTHYDLTASLSWYADRDNATTDAHGTFTLSDPDGSFNVAATLTDV 1028
Cdd:COG4625 402 GGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGN 481
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1029 DDTLDPGSRWDGKSLTKEGAGTLILSGDNDYSGGTTINEGTLVAASTTALGTGLVDNNAT 1088
Cdd:COG4625 482 NTYTGTTTVNGGGNYTQSAGSTLAVEVDAANSDRLVVTGTATLNGGTVVVLAGGYAPGTT 541
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
169-745 |
7.60e-06 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 50.93 E-value: 7.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 169 TLTDSTLTIDGNFGVMTLYTGSEATLDGTIVEAANSSSAQVQQGSTLNVLDGSTITLAQGQINVVAGNTATDEGSTLNLS 248
Cdd:COG4625 1 GGGGGGGGGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 249 DSSVSSAGTMSTIQGTNKAALNLTNATITHTNASGAAVQANNATTLDIIGGNITSAGTGVYILASDARIDGATINADGDG 328
Cdd:COG4625 81 GGGGGGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 329 IFITSKRKLDGYEDLNALTVNKAQVNSDTIALHVDTGTTINAPIVLTDSTFEAPEVIKLGSKVVIQANNTTLIGDVAQSD 408
Cdd:COG4625 161 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 409 MSSSSLSLSQGSTLTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLTNDGDITLGNASGSTGTLLTVDNTLTLQDDSQINAT 488
Cdd:COG4625 241 GGGGGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 489 LDTANSSPIIKAANVTLGGTLNLSSTATFVAPETDEHFGSITLIDSQSAITTDFDSVTLDADTSAM--PDYLTINAGVDA 566
Cdd:COG4625 321 GGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGgsGGGGGGGAGGGG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 567 NDNTNYELSTGLSWYAGANSARAAHGTFTVDAGSTFTVTSELDETTATSNWNGSKLTKQGDGTLILSNTGNDYGDTEIDG 646
Cdd:COG4625 401 GGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTG 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 647 GILAAKDAAALGTGDVTIAESATLELS-QGTLDNNVTGEGQIVKSGSDELIVTGANDYSGGTTISAGALTADHADSLGTG 725
Cdd:COG4625 481 NNTYTGTTTVNGGGNYTQSAGSTLAVEvDAANSDRLVVTGTATLNGGTVVVLAGGYAPGTTYTILAVAAALDALAGNGDL 560
|
570 580
....*....|....*....|
gi 1478601329 726 TIANNGVLKVGEGELENTLS 745
Cdd:COG4625 561 SALYNALAALDAAAARAALD 580
|
|
| AidA |
COG3468 |
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ... |
422-840 |
8.53e-06 |
|
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain] Cd Length: 846 Bit Score: 50.72 E-value: 8.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 422 LTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLTNDGDITLGNASGSTGTLLTVDNTLTLQDDSQINATLDTANSSPIIKAA 501
Cdd:COG3468 1 TASGGGGGATGLGGGGTGGGGGLGGTGGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 502 NVTLGGTLNLSSTATFVAPETDEHFGSITLIDSqSAITTDFDSVTLDADTSAMPDYLTINAGVDANDNTNYELSTGLSWY 581
Cdd:COG3468 81 SGGTGGNSTGGGGGNSGTGGTGGGGGGGGSGNG-GGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 582 AGANSARAAHGTFTVDAGSTFTVTSELDETTATSNWNGSKLTKQGDGTLILSNTGNDYGDTEIDGGILAAKDAAALGTGD 661
Cdd:COG3468 160 GTGSGGGGSGGGGGAGGGGGGGAGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGNTGGGVG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 662 VTIAESATLELSQGTLDNNVTGEGQIVKSGSDELIVTGANDYSGGTTISAGALTADHADSLGTGTIANNGVLKVGEGELE 741
Cdd:COG3468 240 GGGGSAGGTGGGGLTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGGGGGASGTGGGGTASTGGGGGGGGGNGGGGGGG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 742 NTLSGTGSLVKTGTGELTLSGDNDYSGGTTIDDGVLIADNADSLGTGAVANNGELQVGEGELENTLSGSGSLVKTGTGE- 820
Cdd:COG3468 320 SNAGGGSGGGGGGGGGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGTGLTTGg 399
|
410 420
....*....|....*....|....
gi 1478601329 821 ----LTLNGDNSYSGGTTITGGTL 840
Cdd:COG3468 400 tgnnGGGGVGGGGGGGLTLTGGTL 423
|
|
| AidA |
COG3468 |
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ... |
212-627 |
9.13e-06 |
|
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain] Cd Length: 846 Bit Score: 50.72 E-value: 9.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 212 GSTLNVLDGSTITLAQGQINVVAGNTATDEGSTLNLSDSSVSSAGTMSTIQGTNKAALNLTNATITHTNASGAAVQANNA 291
Cdd:COG3468 17 TGGGGGLGGTGGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAGSGGTGGNSTGGGGGNS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 292 TTLDIIGGNITSAGTGVYILASDARIDGATINADGDGIFITskrkLDGYEDLNALTVNKAQVNSDTIALHVDTGTTINAP 371
Cdd:COG3468 97 GTGGTGGGGGGGGSGNGGGGGGGGGGGGTGGGGGGGTGSAG----GGGGGGGGGTGVGGTGAAAAGGGTGSGGGGSGGGG 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 372 IVLTDSTFEAPEVIKLGSKVVIQANNTTLIGDVAQSDMSSSSLSLSQGSTLTGSVDAMFTTLSLDDTSQWNMTDPSTVGN 451
Cdd:COG3468 173 GAGGGGGGGAGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGNTGGGVGGGGGSAGGTGGGG 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 452 LTNDGDITLGNASGSTGTLLTVDNTLTLQDDSQINATLDTANSSPIIKAANVTLGGTLNLSSTATFVAPETDEHFGSITL 531
Cdd:COG3468 253 LTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGGGGGASGTGGGGTASTGGGGGGGGGNGGGGGGGSNAGGGSGGGGGG 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 532 IDSQSAITTDFDSVTLDADTSAMPDYLTINAGVDANDNTNYELSTGLSWYAGANSARAAHGTFTVDAGSTFTVTSELDET 611
Cdd:COG3468 333 GGGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGTGLTTGGTGNNGGGGVGGGG 412
|
410
....*....|....*.
gi 1478601329 612 TATSNWNGSKLTKQGD 627
Cdd:COG3468 413 GGGLTLTGGTLTVNGN 428
|
|
| autotrns_rpt |
TIGR02601 |
autotransporter-associated beta strand repeat; This model represent a core 32-residue region ... |
1267-1295 |
9.17e-06 |
|
autotransporter-associated beta strand repeat; This model represent a core 32-residue region of a class of bacterial protein repeat found in one to 30 copies per protein. Most proteins with a copy of this repeat have domains associated with membrane autotransporters (pfam03797, TIGR01414). The repeats occur with a periodicity of 60 to 100 residues. A pattern of sequence conservation is that every second residue is well-conserved across most of the domain. pfam05594 is based on a longer, much more poorly conserved multiple sequence alignment and hits some of the same proteins as this model with some overlap between the hit regions of the two models. It describes these repeats as likely to have a beta-helical structure. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274223 [Multi-domain] Cd Length: 32 Bit Score: 43.94 E-value: 9.17e-06
10 20
....*....|....*....|....*....
gi 1478601329 1267 SLTKLGAGKLTLSGANTYTGDTNVQEGTL 1295
Cdd:TIGR02601 1 GLTKTGAGTLTLSGANTYTGGTTVNAGTL 29
|
|
| AidA |
COG3468 |
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ... |
72-470 |
1.26e-05 |
|
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain] Cd Length: 846 Bit Score: 50.33 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 72 THVLDASTPPMSYSGTDEGSALYVSGVATVGWQPTTVTGTGLVIETSGGGADDPDGGKYVSNAISLDHYAILELTDAKIT 151
Cdd:COG3468 27 GGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAGSGGTGGNSTGGGGGNSGTGGTGGGGG 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 152 TTGIYTQGISAADGSKLTLTDSTLTIDGNFGVMTLYTGSEATLDGTIVEAANSSSAQVQQGSTLNVLDGSTITLAQGQIN 231
Cdd:COG3468 107 GGGSGNGGGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGGTGSGGGGSGGGGGAGGGGGGGAGGSG 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 232 VVAGNTATDEGSTLNLSDSSVSSAGTMSTIQGTNKAALNLTNATITHTNASGAAVQANNATTLDIIGGNITSAGTGVYIL 311
Cdd:COG3468 187 GAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGNTGGGVGGGGGSAGGTGGGGLTGGGAAGTGGGGG 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 312 ASDARIDGATINADGDGIFITSKRKLDGYEDLNALTVNKAQ--------VNSDTIALHVDTGTTINAPIVLTDSTFEAPE 383
Cdd:COG3468 267 GTGTGSGGGGGGGANGGGSGGGGGASGTGGGGTASTGGGGGggggngggGGGGSNAGGGSGGGGGGGGGGGGGGTTLNGA 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 384 VIKLGSKVVIQANNTTLIGDVAQSDMSSSSLSLSQGSTLTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLTNDGDITL--- 460
Cdd:COG3468 347 GSAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGTGLTTGGTGNNGGGGVGGGGGGGLTLTGGTLtvn 426
|
410
....*....|
gi 1478601329 461 GNASGSTGTL 470
Cdd:COG3468 427 GNYTGNNGTL 436
|
|
| AidA |
COG3468 |
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ... |
626-1063 |
2.99e-05 |
|
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain] Cd Length: 846 Bit Score: 49.17 E-value: 2.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 626 GDGTLILSNTGNDYGDTEIDGGILAAKDAAALGTGDVTIAESATLELSQGTLDNNVTGEGQIVKSGSDELIVTGANDYSG 705
Cdd:COG3468 2 ASGGGGGATGLGGGGTGGGGGLGGTGGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAGS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 706 GTTISAGALTADHADSLGTGTIANNGVLKVGEGELENTLSGTGSLVKTGTGELTLSGDNDYSGGTTIDDGVLIADNADSL 785
Cdd:COG3468 82 GGTGGNSTGGGGGNSGTGGTGGGGGGGGSGNGGGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGGT 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 786 GTGAVANNGE----LQVGEGELENTLSGSGSLVKTGTGELTLNGDNSYSGGTTITGGTLIAANVNALGGGDVDNAGTLKL 861
Cdd:COG3468 162 GSGGGGSGGGggagGGGGGGAGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGNTGGGVGGG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 862 DAEGEFNLANVTTQSGATTELSKGTTLNVDSLTQQADSTLNIDLSKTNGESAITADSVSLAGALNITGIGNVTDSWTPEA 941
Cdd:COG3468 242 GGSAGGTGGGGLTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGGGGGASGTGGGGTASTGGGGGGGGGNGGGGGGGSN 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 942 YTYTLIDSDSAITTDFNDLTVAGMNSEDVDFLTIDGKVDEADNTHYDLTASLSWYADRDNATTDAHGTFTLSDPDGSFNV 1021
Cdd:COG3468 322 AGGGSGGGGGGGGGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGTGLTTGGTG 401
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1478601329 1022 AATLTDVDDTLDPGSRWDGksltkegaGTLILSGDNDYSGGT 1063
Cdd:COG3468 402 NNGGGGVGGGGGGGLTLTG--------GTLTVNGNYTGNNGT 435
|
|
| autotrns_rpt |
TIGR02601 |
autotransporter-associated beta strand repeat; This model represent a core 32-residue region ... |
749-780 |
4.11e-05 |
|
autotransporter-associated beta strand repeat; This model represent a core 32-residue region of a class of bacterial protein repeat found in one to 30 copies per protein. Most proteins with a copy of this repeat have domains associated with membrane autotransporters (pfam03797, TIGR01414). The repeats occur with a periodicity of 60 to 100 residues. A pattern of sequence conservation is that every second residue is well-conserved across most of the domain. pfam05594 is based on a longer, much more poorly conserved multiple sequence alignment and hits some of the same proteins as this model with some overlap between the hit regions of the two models. It describes these repeats as likely to have a beta-helical structure. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274223 [Multi-domain] Cd Length: 32 Bit Score: 42.02 E-value: 4.11e-05
10 20 30
....*....|....*....|....*....|..
gi 1478601329 749 SLVKTGTGELTLSGDNDYSGGTTIDDGVLIAD 780
Cdd:TIGR02601 1 GLTKTGAGTLTLSGANTYTGGTTVNAGTLQVG 32
|
|
| AidA |
COG3468 |
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ... |
344-784 |
2.89e-04 |
|
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain] Cd Length: 846 Bit Score: 45.71 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 344 NALTVNKAQVNSDTIALHVDTGTTINAPIVLTDSTFEAPEVIKLGSKVVIQANNTTLIGDVAQSDMSSSSLSLSQGSTLT 423
Cdd:COG3468 8 GATGLGGGGTGGGGGLGGTGGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAGSGGTGGN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 424 GSVDAMFTTLSLDDTSQWNMTDPSTVGNLTNDGDITLGNASGSTGTLLTVDNTLTLQDDSQINATLDTANSSPIIKAANV 503
Cdd:COG3468 88 STGGGGGNSGTGGTGGGGGGGGSGNGGGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGGTGSGGGG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 504 TLGGTLNLSSTATFVAPETDEHFGSITLIDSQSAITTDFDSVTLDADTSAMPDYLTINAGVDANDNTNYELSTGLSWYAG 583
Cdd:COG3468 168 SGGGGGAGGGGGGGAGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGNTGGGVGGGGGSAGG 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 584 ANSARAAHGTFTVDAGSTFTVTSELDETTATSNWNGSKLTKQGDGTLILSNTGNDYGDTEIDGGILAAKDAAALGTGDVT 663
Cdd:COG3468 248 TGGGGLTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGGGGGASGTGGGGTASTGGGGGGGGGNGGGGGGGSNAGGGSG 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 664 IAESATLELSQGTLDNNVTGEGQIVKSGSDELIVTGANDYSGGTTISAGALTADHADSLGTGTIANNGVLKVGEGELENT 743
Cdd:COG3468 328 GGGGGGGGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGTGLTTGGTGNNGGGG 407
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1478601329 744 LSGTGSLVKTGTGE-LTLSGDNDYSGGTTIDDGVLIADNADS 784
Cdd:COG3468 408 VGGGGGGGLTLTGGtLTVNGNYTGNNGTLVLNTVLGDDNSPT 449
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
106-604 |
4.02e-04 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 45.54 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 106 TTVTGTGLVIETSGGGADDPDGGKYVSNAISLDHYAILELTDAKITTTGIYTQGISAADGSKLTLTDSTLTIDGNFGVMT 185
Cdd:COG4625 8 GGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGGGGGGGG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 186 LYTGSEATLDGTIVEAANSSSAQVQQGSTLNVLDGSTITLAQGQINVVAGNTATDEGSTLNLSDSSVSSAGTMSTIQGTN 265
Cdd:COG4625 88 GGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAGGGGGGG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 266 KAALNLTNATITHTNASGAAVQANNATTLDIIGGNITSAGTGVYILASDARIDGATINADGDGIFITSKRKLDGYEDLNA 345
Cdd:COG4625 168 GGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 346 LTVNKAQVNSDTIALHVDTGTTINAPIVLTDSTFEAPEVIKLGSKVVIQANNTTLIGDVAQSDMSSSSLSLSQGSTLTGS 425
Cdd:COG4625 248 AGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 426 VDAMFTTLSLDDTSQWNMTDPSTVGNLTNDGDITLGNASGSTGTLLTVDNTLTLQDDSQINATLDTANSSPIIKAANVTL 505
Cdd:COG4625 328 GGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGGGGGAGG 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 506 GGTLNLSSTATFVAPETDEHFGSITLIDSQSAITTDFDSVTLDADTSAMPDYLTINAGVDANDNTNYELSTGLSWYAGAN 585
Cdd:COG4625 408 TGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGNNTYTGT 487
|
490
....*....|....*....
gi 1478601329 586 SARAAHGTFTVDAGSTFTV 604
Cdd:COG4625 488 TTVNGGGNYTQSAGSTLAV 506
|
|
| YhjY |
COG5571 |
Uncharacterized conserved protein YhjY, contains autotransporter beta-barrel domain [General ... |
1272-1826 |
8.85e-04 |
|
Uncharacterized conserved protein YhjY, contains autotransporter beta-barrel domain [General function prediction only];
Pssm-ID: 444313 [Multi-domain] Cd Length: 648 Bit Score: 44.10 E-value: 8.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1272 GAGKLTLSGANTYTGDTNVQEGTLWLAGDGTIGEVGSQQAVNVASDATFGGSNGTTVNGKVTNEGTLVFGDSEETGAIFT 1351
Cdd:COG5571 59 QALGAGLSGTNGFSGGAGSSSGTGPTANGGLAGAGGVDLAGAGGGGGASGLAGGAGGAGGTAAAGGAAAAGGGAAGNAAT 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1352 LNGDLINMGTMTSGSSSSTPGNTLYVDGDYTGNGGSLYLNTVLGDDDSATDKLVITGDASGTTDLYINGIGDGAQTTNGI 1431
Cdd:COG5571 139 AAAAAAAGTALQLSGLTTAGAVGGVAGTAALNGATANTGLGAAAALAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1432 EV-----VDVGGVSTSDAFELKNEVNAGLYTYRLYWNESDNDWYLASKAQSDDDDSGGDDSDVTPSDGGDDGGNVT---- 1502
Cdd:COG5571 219 AVlaspaPAAGGAAAAAAGAAAAAASAAANAATQANLLLLALALGSNGNAVGLNAVGLANEAAAPGAVGGDAGSTGatps 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1503 -----------------------PPDDGGDVAPQYRADIGAY----------MGNQWMARNLQMQTLYDREGSQYRNADG 1549
Cdd:COG5571 299 tlssascvassltaanantlyaaADTAGPAGATAALAAAAAAvlasaaavaqAALALAAAGGQARSLAVAAGQGRGARGG 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1550 SVWARFKAGKAESEAVsGNIDMDSNYSQFQLGGDILAwgngQQSVTVGVMASYINADTDSTGNRGADGsqftssgnvDGY 1629
Cdd:COG5571 379 QTRGGGGAGGTTGGGV-GAGGGDGDGPNLTLGVDYRL----SDNLLLGAALSYGRQDLDFGDGGSYDA---------RST 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1630 NLGVYATWFADaqthsGAYVDSWYQYGFYNNSVE-----SGDAGSESYDSTANAVSLETGYRYDIALSNgntVSLTPQAQ 1704
Cdd:COG5571 445 SLSLYAGYRAG-----GLWVDADLSYGDLDYDIRrhirlGPATRTETGDTDGSQWGARLTAGYDFTAGR---LRTGPFAG 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 1705 VVWQNYSADSVKDNYGT----RIDGQDGDSWTTRLGLRVDGKLykgsRTVIQPFAEANWLHTSDD---------VSVSFD 1771
Cdd:COG5571 517 LDYQKVKVDGYTETGAGstalSFGDQDRDSLVGSLGWRADYQL----LGRFNPYAEVAYEHEFGDddrdvtaglASLPAG 592
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 1478601329 1772 DATVK-QDLPANRAELKVGLQADIDKQWSVRAQVAGQTGSNDFGDLNGSLNLRYNW 1826
Cdd:COG5571 593 SFSLPaAAPDKNWGRATLGASAALTNGVSLFAGYSGTFGRDDGRQTSVNLGLSARF 648
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
56-522 |
1.32e-03 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 43.61 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 56 SPLAMADNQVSYADAQTHVLDASTPPMSYSGTDEGSALYVSGVATVGWQPTTVTGTGLVIETSGGGADDPDGGKYVSNAI 135
Cdd:COG4625 75 GGGGGGGGGGGGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGG 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 136 SLDHYAILELTDAKITTTGIYTQGISAADGSKLTLTDSTLTIDGNFGVMTLYTGSEATLDGTIVEAANSSSAQVQQGSTL 215
Cdd:COG4625 155 GGAGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGG 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 216 NVLDGSTITLAQGQINVVAGNTATDEGSTLNLSDSSVSSAGTMSTIQGTNKAALNLTNATITHTNASGAAVQANNATTLD 295
Cdd:COG4625 235 GGGGGGGGGGGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGG 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 296 IIGGNITSAGTGVYILASDARIDGATINADGDGIFITSKRKLDGYEDLNALTVNKAQVNSDTIALHVDTGTTINAPIVLT 375
Cdd:COG4625 315 GGGGGGGGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGG 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 376 DSTFEAPEVIKLGSKVVIQANNTTLIGDVAQSDMSSSSLSLSQGSTLTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLTND 455
Cdd:COG4625 395 GAGGGGGGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAG 474
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1478601329 456 GDITLGNASGSTGTLLTVDNTLTLQDDSQINATLDTANSSPIIKAANVTLGGTLNLSSTATFVAPET 522
Cdd:COG4625 475 TLTLTGNNTYTGTTTVNGGGNYTQSAGSTLAVEVDAANSDRLVVTGTATLNGGTVVVLAGGYAPGTT 541
|
|
| PL1_Passenger_AT |
cd01343 |
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of ... |
344-475 |
2.02e-03 |
|
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases, SPATEs (serine protease autotransporters secreted by Enterobacteriaceae), Bordetella pertacins, and nonprotease autotransporters, TibA and similar AIDA-like proteins.
Pssm-ID: 238653 [Multi-domain] Cd Length: 233 Bit Score: 41.96 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478601329 344 NALTVNKAQVNSDTIA-LHVDTGTTINAPIVLTDSTfeapEVIKLGSKVVIQA-----NNTTLIGDVA----QSDMSSSS 413
Cdd:cd01343 1 GRLVSDGGNITAGDNAqLTLGGGALYGSSVTLTNGA----VLDAGNANLSAAAsyatlSGSNIRGTVVlgagQPLQALAE 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1478601329 414 LSLSQGSTLTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLT-NDGDITLGNASGSTGTLLTVDN 475
Cdd:cd01343 77 LLLGGNAAWTGAIQGLNATVSLNLNSVWTLTGDSNVNNLTlNGGTVDFNGPSAGKFNTLTVNT 139
|
|
| autotrns_rpt |
TIGR02601 |
autotransporter-associated beta strand repeat; This model represent a core 32-residue region ... |
687-717 |
2.18e-03 |
|
autotransporter-associated beta strand repeat; This model represent a core 32-residue region of a class of bacterial protein repeat found in one to 30 copies per protein. Most proteins with a copy of this repeat have domains associated with membrane autotransporters (pfam03797, TIGR01414). The repeats occur with a periodicity of 60 to 100 residues. A pattern of sequence conservation is that every second residue is well-conserved across most of the domain. pfam05594 is based on a longer, much more poorly conserved multiple sequence alignment and hits some of the same proteins as this model with some overlap between the hit regions of the two models. It describes these repeats as likely to have a beta-helical structure. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274223 [Multi-domain] Cd Length: 32 Bit Score: 37.01 E-value: 2.18e-03
10 20 30
....*....|....*....|....*....|.
gi 1478601329 687 IVKSGSDELIVTGANDYSGGTTISAGALTAD 717
Cdd:TIGR02601 2 LTKTGAGTLTLSGANTYTGGTTVNAGTLQVG 32
|
|
| PATR |
pfam12951 |
Passenger-associated-transport-repeat; This Autotransporter-associated beta strand repeat ... |
687-714 |
2.56e-03 |
|
Passenger-associated-transport-repeat; This Autotransporter-associated beta strand repeat model represents a core 32-residue region of a class of bacterial protein repeat found in one to 30 copies per protein. Most proteins with a copy of this repeat have domains associated with membrane autotransporters (pfam03797). The repeats occur with a periodicity of 60 to 100 residues. A pattern of sequence conservation is that every second residue is well-conserved across most of the domain. These repeats as likely to have a beta-helical structure. This repeat plays a role in the efficient transport of autotransporter virulence factors to the bacterial surface during growth and infection. The repeat is always associated with the passenger domain of the autotransporter. For these reasons it has been coined the Passenger-associated Transport Repeat (PATR). The mechanism by which the PATR motif promotes transport is uncertain but it is likely that the conserved glycines (see HMM Logo) are required for flexibility of folding and that this folding drives secretion. Autotransporters that contain PATR(s) associate with distinct virulence traits such as subtilisin (S8) type protease domains and polymorphic outer-membrane protein repeats, whilst SPATE (S6) type protease and lipase-like autotransporters do not tend to contain PATR motifs.
Pssm-ID: 463760 [Multi-domain] Cd Length: 28 Bit Score: 36.94 E-value: 2.56e-03
10 20
....*....|....*....|....*...
gi 1478601329 687 IVKSGSDELIVTGANDYSGGTTISAGAL 714
Cdd:pfam12951 1 LTKTGAGTLTLTGANTYTGGTTVNAGTL 28
|
|
| |
