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Conserved domains on  [gi|1142722208|emb|SJL88215|]
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unnamed protein product [Mammalian expression vector pSV51E6HmK]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03102 PHA03102
Small T antigen; Reviewed
 7-153 7.98e-72

Small T antigen; Reviewed


:

Pssm-ID: 222986 [Multi-domain]  Cd Length: 153  Bit Score: 213.38  E-value: 7.98e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142722208   7 REESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATE---- 82
Cdd:PHA03102    1 REESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEedvp 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1142722208  83 --VFASSLNPGVDAMYCKQWPECAKKMSANCICLLCLLRMKHENRKLYRKDPLVWVDCYCFDCFRMWFGLDLC 153
Cdd:PHA03102   81 sgYVGATFGDRVNALYCKDWDTCLKNLSSLCKCIFCLLRKQHRLKQKLRPEPLVWGECYCYKCFRQWFGLDIT 153
 
Name Accession Description Interval E-value
PHA03102 PHA03102
Small T antigen; Reviewed
 7-153 7.98e-72

Small T antigen; Reviewed


Pssm-ID: 222986 [Multi-domain]  Cd Length: 153  Bit Score: 213.38  E-value: 7.98e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142722208   7 REESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATE---- 82
Cdd:PHA03102    1 REESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEedvp 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1142722208  83 --VFASSLNPGVDAMYCKQWPECAKKMSANCICLLCLLRMKHENRKLYRKDPLVWVDCYCFDCFRMWFGLDLC 153
Cdd:PHA03102   81 sgYVGATFGDRVNALYCKDWDTCLKNLSSLCKCIFCLLRKQHRLKQKLRPEPLVWGECYCYKCFRQWFGLDIT 153
Papo_T_antigen pfam02380
T-antigen specific domain; This domain represents a conserved region in papovavirus small and ...
 83-174 2.50e-41

T-antigen specific domain; This domain represents a conserved region in papovavirus small and middle T-antigens. It is found as the N-terminal domain in the small T-antigen, and is centrally located in the middle T-antigen.


Pssm-ID: 367062  Cd Length: 93  Bit Score: 134.05  E-value: 2.50e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142722208  83 VFASSLNPGVDAMYCKQWPECAKKMSANCICLLCLLRMKHENR-KLYRKDPLVWVDCYCFDCFRMWFGLDLCEGTLLLWC 161
Cdd:pfam02380   1 VLGATFGDKYDALYCKDWPTCLKNVSSNCNCILCLLRKQHKNRkKFLRKPPLVWGECYCYDCYRQWFGLPLTEETLFLWA 80

                          90
                  ....*....|...
gi 1142722208 162 DIIGQTTYRDLKL 174
Cdd:pfam02380  81 QIIANTPFRDLKL 93
DnaJ smart00271
DnaJ molecular chaperone homology domain;
13-67 7.11e-12

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 57.63  E-value: 7.11e-12
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142722208   13 LMDLLGLERSAwgNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVK 67
Cdd:smart00271   3 YYEILGVPRDA--SLDEIKKAYRKLALKYHPDKNPGdkeeaEEKFKEINEAYEVLSDPEK 60
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 15-60 3.00e-06

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 42.53  E-value: 3.00e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1142722208  15 DLLGLERSAwgNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYK 60
Cdd:cd06257     4 DILGVPPDA--SDEEIKKAYRKLALKYHPDKNPDdpeaEEKFKEINEAYE 51
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
15-59 8.01e-05

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 39.70  E-value: 8.01e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1142722208  15 DLLGLERSAwgNIPLMRKAYLKKCKEFHPDKGG-----DEEKMKKMNTLY 59
Cdd:COG2214     9 AVLGVPPDA--SLEEIRQAYRRLAKLLHPDRGGelkalAEELFQRLNEAY 56
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 15-59 9.28e-04

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 38.74  E-value: 9.28e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1142722208  15 DLLGLERSAwgNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLY 59
Cdd:TIGR02349   4 EILGVSKDA--SEEEIKKAYRKLAKKYHPDRNkdkEAEEKFKEINEAY 49
 
Name Accession Description Interval E-value
PHA03102 PHA03102
Small T antigen; Reviewed
 7-153 7.98e-72

Small T antigen; Reviewed


Pssm-ID: 222986 [Multi-domain]  Cd Length: 153  Bit Score: 213.38  E-value: 7.98e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142722208   7 REESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATE---- 82
Cdd:PHA03102    1 REESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEedvp 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1142722208  83 --VFASSLNPGVDAMYCKQWPECAKKMSANCICLLCLLRMKHENRKLYRKDPLVWVDCYCFDCFRMWFGLDLC 153
Cdd:PHA03102   81 sgYVGATFGDRVNALYCKDWDTCLKNLSSLCKCIFCLLRKQHRLKQKLRPEPLVWGECYCYKCFRQWFGLDIT 153
Papo_T_antigen pfam02380
T-antigen specific domain; This domain represents a conserved region in papovavirus small and ...
 83-174 2.50e-41

T-antigen specific domain; This domain represents a conserved region in papovavirus small and middle T-antigens. It is found as the N-terminal domain in the small T-antigen, and is centrally located in the middle T-antigen.


Pssm-ID: 367062  Cd Length: 93  Bit Score: 134.05  E-value: 2.50e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142722208  83 VFASSLNPGVDAMYCKQWPECAKKMSANCICLLCLLRMKHENR-KLYRKDPLVWVDCYCFDCFRMWFGLDLCEGTLLLWC 161
Cdd:pfam02380   1 VLGATFGDKYDALYCKDWPTCLKNVSSNCNCILCLLRKQHKNRkKFLRKPPLVWGECYCYDCYRQWFGLPLTEETLFLWA 80

                          90
                  ....*....|...
gi 1142722208 162 DIIGQTTYRDLKL 174
Cdd:pfam02380  81 QIIANTPFRDLKL 93
PHA02624 PHA02624
large T antigen; Provisional
 1-85 1.19e-39

large T antigen; Provisional


Pssm-ID: 222912 [Multi-domain]  Cd Length: 647  Bit Score: 141.66  E-value: 1.19e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142722208   1 MDKVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDfgGFWDA 80
Cdd:PHA02624    1 MDKTLSREESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQSF--GTQDS 78


                  ....*
gi 1142722208  81 TEVFA 85
Cdd:PHA02624   79 SEIPT 83
DnaJ smart00271
DnaJ molecular chaperone homology domain;
13-67 7.11e-12

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 57.63  E-value: 7.11e-12
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142722208   13 LMDLLGLERSAwgNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVK 67
Cdd:smart00271   3 YYEILGVPRDA--SLDEIKKAYRKLALKYHPDKNPGdkeeaEEKFKEINEAYEVLSDPEK 60
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 15-60 3.00e-06

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 42.53  E-value: 3.00e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1142722208  15 DLLGLERSAwgNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYK 60
Cdd:cd06257     4 DILGVPPDA--SDEEIKKAYRKLALKYHPDKNPDdpeaEEKFKEINEAYE 51
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 15-59 3.05e-05

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 40.15  E-value: 3.05e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1142722208  15 DLLGLERSAwgNIPLMRKAYLKKCKEFHPDKG----GDEEKMKKMNTLY 59
Cdd:pfam00226   4 EILGVSPDA--SDEEIKKAYRKLALKYHPDKNpgdpEAEEKFKEINEAY 50
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
15-59 8.01e-05

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 39.70  E-value: 8.01e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1142722208  15 DLLGLERSAwgNIPLMRKAYLKKCKEFHPDKGG-----DEEKMKKMNTLY 59
Cdd:COG2214     9 AVLGVPPDA--SLEEIRQAYRRLAKLLHPDRGGelkalAEELFQRLNEAY 56
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 15-69 9.06e-05

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 40.46  E-value: 9.06e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1142722208  15 DLLGLERSAwgNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYA 69
Cdd:COG0484     4 EILGVSRDA--SAEEIKKAYRKLAKKYHPDRNPGdpeaEEKFKEINEAYEVLSDPEKRA 60
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 13-75 9.55e-05

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 41.80  E-value: 9.55e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1142722208  13 LMD---LLGLERSAwgNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLYKKMEDGVKYAHQPDFG 75
Cdd:PRK14292    1 MMDyyeLLGVSRTA--SADEIKSAYRKLALKYHPDRNkekGAAEKFAQINEAYAVLSDAEKRAHYDRFG 67
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 16-75 1.50e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 41.15  E-value: 1.50e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1142722208  16 LLGLERSAwgNIPLMRKAYLKKCKEFHPDK---GGDEEKMKKMNTLYKKMEDGVKYAHQPDFG 75
Cdd:PRK14300    8 ILGVSKTA--SQADLKKAYLKLAKQYHPDTtdaKDAEKKFKEINAAYDVLKDEQKRAAYDRFG 68
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 15-84 2.55e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 40.22  E-value: 2.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142722208  15 DLLGLERSAwgNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAH--------------------Q 71
Cdd:PRK14298    9 EILGLSKDA--SVEDIKKAYRKLAMKYHPDKNKEpdaEEKFKEISEAYAVLSDAEKRAQydrfghagidnqysaedifrG 86

                          90
                  ....*....|...
gi 1142722208  72 PDFGGFWDATEVF 84
Cdd:PRK14298   87 ADFGGFGDIFEMF 99
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 12-64 3.70e-04

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 39.80  E-value: 3.70e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1142722208  12 QLMDLLGLERSAwgNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMED 64
Cdd:PTZ00037   29 KLYEVLNLSKDC--TTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSD 79
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 15-75 4.08e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 39.69  E-value: 4.08e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1142722208  15 DLLGLERSAwgNIPLMRKAYLKKCKEFHPD---KGGDEEKMKKMNTLYKKMEDGVKYAHQPDFG 75
Cdd:PRK14276    8 DRLGVSKDA--SQDEIKKAYRKLSKKYHPDinkEPGAEEKYKEVQEAYETLSDPQKRAAYDQYG 69
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
11-55 4.31e-04

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 37.08  E-value: 4.31e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1142722208  11 LQLMD---LLGLERSAwgNIPLMRKAYLKKCKEFHPDK--GGDEEKMKKM 55
Cdd:COG1076     1 MQLDDafeLLGLPPDA--DDAELKRAYRKLQREHHPDRlaAGLPEEEQRL 48
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 15-75 5.18e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 39.61  E-value: 5.18e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1142722208  15 DLLGLERSAwgNIPLMRKAYLKKCKEFHPD--KGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFG 75
Cdd:PRK14287    8 EVLGVDRNA--SVDEVKKAYRKLARKYHPDvnKAPDaEDKFKEVKEAYDTLSDPQKKAHYDQFG 69
PRK14289 PRK14289
molecular chaperone DnaJ;
15-75 6.33e-04

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 39.04  E-value: 6.33e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1142722208  15 DLLGLERSAwgNIPLMRKAYLKKCKEFHPDKG-GD---EEKMKKMNTLYKKMEDGVKYAHQPDFG 75
Cdd:PRK14289    9 EVLGVSKTA--TVDEIKKAYRKKAIQYHPDKNpGDkeaEEKFKEAAEAYDVLSDPDKRSRYDQFG 71
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 15-64 8.31e-04

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 36.13  E-value: 8.31e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1142722208  15 DLLGLERSAWGNIplMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED 64
Cdd:COG5407     4 EVLGVAKTASADE--IKKAYRKLAKKYHPDRNKGdpkaEERFKEINEAYELLSD 55
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 15-59 9.28e-04

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 38.74  E-value: 9.28e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1142722208  15 DLLGLERSAwgNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLY 59
Cdd:TIGR02349   4 EILGVSKDA--SEEEIKKAYRKLAKKYHPDRNkdkEAEEKFKEINEAY 49
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 15-85 1.04e-03

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 38.57  E-value: 1.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142722208  15 DLLGLERSAWGNipLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFG-----------GFWD 79
Cdd:PRK14301    8 EVLGVSRDASED--EIKKAYRKLALQYHPDRNPDnpeaEQKFKEAAEAYEVLRDAEKRARYDRFGhagvngnggfgGFSS 85


                  ....*.
gi 1142722208  80 ATEVFA 85
Cdd:PRK14301   86 AEDIFS 91
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 13-75 1.21e-03

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 38.24  E-value: 1.21e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1142722208  13 LMDLLGLERSAwgNIPLMRKAYLKKCKEFHPDKG-GD---EEKMKKMNTLYKKMEDGVKYAHQPDFG 75
Cdd:PRK14277    7 YYEILGVDRNA--TEEEIKKAYRRLAKKYHPDLNpGDkeaEQKFKEINEAYEILSDPQKRAQYDQFG 71
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 15-86 1.29e-03

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 38.21  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142722208  15 DLLGLERSAwgNIPLMRKAYLKKCKEFHPDKG-GD---EEKMKKMNTLYKKMEDGVK------YAHQ----PDFGGFWDA 80
Cdd:PRK14294    8 EILGVTRDA--SEEEIKKSYRKLAMKYHPDRNpGDkeaEELFKEAAEAYEVLSDPKKrgiydqYGHEglsgTGFSGFSGF 85


                  ....*.
gi 1142722208  81 TEVFAS 86
Cdd:PRK14294   86 DDIFSS 91
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 15-75 1.46e-03

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 38.25  E-value: 1.46e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1142722208  15 DLLGLERSAwgNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFG 75
Cdd:PRK14281    7 EVLGVSRSA--DKDEIKKAYRKLALKYHPDKNPDnkeaEEHFKEVNEAYEVLSNDDKRRRYDQFG 69
PRK14280 PRK14280
molecular chaperone DnaJ;
15-75 2.18e-03

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 37.78  E-value: 2.18e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1142722208  15 DLLGLERSAWGNipLMRKAYLKKCKEFHPD---KGGDEEKMKKMNTLYKKMEDGVKYAHQPDFG 75
Cdd:PRK14280    8 EVLGVSKSASKD--EIKKAYRKLSKKYHPDinkEEGADEKFKEISEAYEVLSDDQKRAQYDQFG 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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