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Conserved domains on  [gi|1586682375|gb|TCA52655|]
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NADH-quinone oxidoreductase subunit A [Rhizobium pisi]

Protein Classification

NADH-quinone oxidoreductase subunit A( domain architecture ID 10012780)

NADH-quinone oxidoreductase subunit A (NuoA) is part of the membrane domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

EC:  1.6.5.9
Gene Ontology:  GO:0048038|GO:0016655|GO:0005886
PubMed:  23417064|24059520

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 78-198 1.23e-68

NADH:ubiquinone oxidoreductase subunit A; Validated


:

Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 205.10  E-value: 1.23e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  78 MTELLSSYIPIAIFIGIALVIGLALLIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFL 157
Cdd:PRK06602    1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1586682375 158 FPWAVSFGAIGWFGFWSMMVFLLVLTIGFIYEWKKGALEWE 198
Cdd:PRK06602   81 FPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
 
Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 78-198 1.23e-68

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 205.10  E-value: 1.23e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  78 MTELLSSYIPIAIFIGIALVIGLALLIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFL 157
Cdd:PRK06602    1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1586682375 158 FPWAVSFGAIGWFGFWSMMVFLLVLTIGFIYEWKKGALEWE 198
Cdd:PRK06602   81 FPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 81-197 4.16e-55

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 170.69  E-value: 4.16e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  81 LLSSYIPIAIFIGIALVIGLALLIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPW 160
Cdd:COG0838     1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1586682375 161 AVSFGAIGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 197
Cdd:COG0838    81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
103-196 2.03e-48

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 152.96  E-value: 2.03e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375 103 LIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFGAIGWFGFWSMMVFLLVL 182
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 1586682375 183 TIGFIYEWKKGALE 196
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
 
Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 78-198 1.23e-68

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 205.10  E-value: 1.23e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  78 MTELLSSYIPIAIFIGIALVIGLALLIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFL 157
Cdd:PRK06602    1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1586682375 158 FPWAVSFGAIGWFGFWSMMVFLLVLTIGFIYEWKKGALEWE 198
Cdd:PRK06602   81 FPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 81-197 4.16e-55

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 170.69  E-value: 4.16e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  81 LLSSYIPIAIFIGIALVIGLALLIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPW 160
Cdd:COG0838     1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1586682375 161 AVSFGAIGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 197
Cdd:COG0838    81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
103-196 2.03e-48

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 152.96  E-value: 2.03e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375 103 LIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFGAIGWFGFWSMMVFLLVL 182
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 1586682375 183 TIGFIYEWKKGALE 196
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 88-198 7.87e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 134.45  E-value: 7.87e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  88 IAIFIGIALVIGLALLI--APFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFG 165
Cdd:MTH00055    6 LGIFILLLFSIGLSTVIsgASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYN 85

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1586682375 166 AIGWFGFWSMMVFLLVLTIGFIYEWKKGALEWE 198
Cdd:MTH00055   86 QIGLFGFWVMYLFLIILTIGLIYEWVKGGLEWE 118
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 88-198 2.18e-38

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 128.26  E-value: 2.18e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  88 IAIFIGIALVIGLALLIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFGAI 167
Cdd:MTH00018    3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1586682375 168 GWFGFWSMMVFLLVLTIGFIYEWKKGALEWE 198
Cdd:MTH00018   83 APFGFWTMVGFLFILTLGLIYEWIKGGLEWE 113
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 88-197 2.17e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 112.78  E-value: 2.17e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  88 IAIFIGIALVIGLALLIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLF--PWAVSFG 165
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLptPWASQLN 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1586682375 166 AIGWFGFWSMMVfLLVLTIGFIYEWKKGALEW 197
Cdd:MTH00069   82 TPTNTLFWSTLI-LILLTLGLIYEWIQGGLEW 112
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 82-198 1.34e-29

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 105.91  E-value: 1.34e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  82 LSSYIPIAIFIGIALVIGLALLIAPFAVAFKAPDSEKLSAYECGFNAFDDAR--MKFDIRFYLVSILFIIFDLEVAFLFP 159
Cdd:PRK07928    1 MNVYIPILVLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAggGRFPVKYYLTAMLFIVFDIEIVFLYP 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1586682375 160 WAVSFGAIGWFGFWSMMVFLLVLTIGFIYEWKKGALEWE 198
Cdd:PRK07928   81 WAVSFDALGVFGLVEMALFMLTVFVAYAYVWRRGGLEWD 119
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 94-198 5.38e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 104.63  E-value: 5.38e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  94 IALVIGLALLIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFGAIGWFGFW 173
Cdd:MTH00030   19 ILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFW 98

                          90       100
                  ....*....|....*....|....*
gi 1586682375 174 SMMVFLLVLTIGFIYEWKKGALEWE 198
Cdd:MTH00030   99 IVYTFLIVLAIGLAYEWIKGGLEWD 123
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 75-197 7.07e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 103.81  E-value: 7.07e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  75 MNMMTELLssyipiaifigIALVIGLALLIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEV 154
Cdd:MTH00113    1 MNLISMLT-----------ISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEI 69

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1586682375 155 AFLFP--WAVSFGAIGWFGFWSMMVFLLvLTIGFIYEWKKGALEW 197
Cdd:MTH00113   70 ALLLPlpWAINLTTPTTTLTWATIILTL-LTLGLIYEWLQGGLEW 113
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 87-197 1.11e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 103.46  E-value: 1.11e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  87 PIAIFIGIALVIGLALLIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLF--PWAVSF 164
Cdd:MTH00136    3 LITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLplPWGDQL 82

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1586682375 165 GAIGWFGFWSMMVfLLVLTIGFIYEWKKGALEW 197
Cdd:MTH00136   83 PSPLLTFFWATAV-LILLTLGLIYEWLQGGLEW 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 88-197 3.00e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 102.28  E-value: 3.00e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  88 IAIFIGIALVIGLALLIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSfGAI 167
Cdd:MTH00203    4 IMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS-NQL 82

                          90       100       110
                  ....*....|....*....|....*....|
gi 1586682375 168 GWFGFWSMMVFLLVLTIGFIYEWKKGALEW 197
Cdd:MTH00203   83 SSLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
77-197 8.32e-28

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 101.36  E-value: 8.32e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  77 MMTELLSSYIPIAIFI--GIALVIGlALLIAPFaVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEV 154
Cdd:PRK07756    1 MASVYENSYMIVLIFLllGILLPVV-ALTLGRM-LRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVET 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1586682375 155 AFLFPWAVSFGAIGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 197
Cdd:PRK07756   79 LFLYPWAVAYDKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
118-198 3.65e-27

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 99.74  E-value: 3.65e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375 118 KLSAYECGFNAFDDARmKFDIRFYLVSILFIIFDLEVAFLFPWAVSFGAIGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 197
Cdd:PRK08489   47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFKLLGLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125


                  .
gi 1586682375 198 E 198
Cdd:PRK08489  126 Q 126
ndhC CHL00022
NADH dehydrogenase subunit 3
 81-197 6.59e-27

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 98.91  E-value: 6.59e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  81 LLSSYIPIAIFIGIALVIGLALLIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPW 160
Cdd:CHL00022    3 LLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPW 82

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1586682375 161 AVSFGAIGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 197
Cdd:CHL00022   83 AMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEW 119
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 87-197 5.00e-26

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 96.59  E-value: 5.00e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  87 PIAIFIGIALVIGLALLIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFGA 166
Cdd:MTH00042    3 NLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLI 82

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1586682375 167 IG-WFGFWSMMVFLLVLTIGFIYEWKKGALEW 197
Cdd:MTH00042   83 TNpSTLLPISLIFLIILTIGLVYEWVNGGLEW 114
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 90-198 6.95e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 96.08  E-value: 6.95e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  90 IFIGIALVIGLALLIAPFAVAFKAP-DSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFGAIG 168
Cdd:MTH00148    6 LSLLFALILSPVLLLLGLVLSKRSYsDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSF 85

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1586682375 169 WFGFWSM-MVFLLVLTIGFIYEWKKGALEWE 198
Cdd:MTH00148   86 SVWSLTSlFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 88-197 2.34e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 94.84  E-value: 2.34e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  88 IAIFIGIALVIGLALLIAPFAVAFKAP-DSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFgA 166
Cdd:MTH00161    2 ILIILLIILLISIILMILASLLSKKSImDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIF-K 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1586682375 167 IGWFGFWSMM--VFLLVLTIGFIYEWKKGALEW 197
Cdd:MTH00161   81 TSNMMSWLITssFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 95-197 1.17e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 80.04  E-value: 1.17e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  95 ALVIGLALLIAPFAVAFKA-PDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVS-FGAIGWFGF 172
Cdd:MTH00202   11 SILISSLLFLVSWMLSFRSlMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVlKSSWSKGGL 90

                          90       100
                  ....*....|....*....|....*
gi 1586682375 173 WSMMVFLLVLTIGFIYEWKKGALEW 197
Cdd:MTH00202   91 LGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 89-197 2.23e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 76.82  E-value: 2.23e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  89 AIFIGIALVIGLALLIAPFAVAFKAP-DSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPW-AVSFGA 166
Cdd:MTH00012    5 MIPMMISLILPPLVLGAAWVLAARSTaDREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVpTILMTS 84

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1586682375 167 IGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 197
Cdd:MTH00012   85 TSKTVVYTSILFLLILVIGLIHEWREGSLDW 115
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 75-197 3.14e-18

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 76.52  E-value: 3.14e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  75 MNMMtellssyipIAIFIGIALVIGLALliapfaVAFKAPD----SEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIF 150
Cdd:MTH00106    1 MNLM---------LTLLTNTLLASLLVL------IAFWLPQlniySEKASPYECGFDPMGSARLPFSMKFFLVAITFLLF 65

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1586682375 151 DLEVAFLF--PWAVSFGAIGWFGFWSMMvFLLVLTIGFIYEWKKGALEW 197
Cdd:MTH00106   66 DLEIALLLplPWASQTNNLNTMLTMALL-LISLLALSLAYEWTQKGLEW 113
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 81-197 4.43e-11

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 58.29  E-value: 4.43e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  81 LLSSYIPIAIFIGI---ALVIGLALLIAPFA-------VAFKAPDSEKLSAYECGFNAFDDARMK--------------- 135
Cdd:PRK06432    1 MLDGYIPLLIIIVViplALIFGFKILPALGAnrygdnrISLKTEDILKKAAYEDTPPGSDQSYLEpyesgevareiwggp 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1586682375 136 FDIRFYLVSILFIIFDLEVAFLFPWAVSFGAIGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 197
Cdd:PRK06432   81 SINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLFAVYYAFKMGYMRW 142
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 94-197 7.83e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 48.74  E-value: 7.83e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  94 IALVIGLALLIAPFAVAFKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSfGAIGWFGFW 173
Cdd:MTH00092   10 FTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS-DFSSLISFF 88

                          90       100
                  ....*....|....*....|....
gi 1586682375 174 SMMVFLLVltiGFIYEWKKGALEW 197
Cdd:MTH00092   89 MLMIFIFF---GFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 88-197 1.34e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 45.27  E-value: 1.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  88 IAIFIGIALVIGLALLIAPFAVAFKAP-----DSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFpwAV 162
Cdd:MTH00060    2 LVLLFVFFVFFLLFLVIYFFHSGLWNNkiysgGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLL--NM 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1586682375 163 SFGAIGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 197
Cdd:MTH00060   80 PFQGLLFYNFWYYYFFLLLLFLGFVVELFSGYVRW 114
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 75-188 4.68e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 35.74  E-value: 4.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586682375  75 MNMMTELLSSYIPIAIFIGIAL-VIGLALLIAPfavafKAPDSEKLSAYECGFNAFDDARMKFDIRFYLVSILFIIFDLE 153
Cdd:PRK06073    1 MSFMQAALAFGLVIVLGLAAGVgTYKLLKLILP-----SKPTPLKVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPI 75

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1586682375 154 VAFLFPWAvsfgaiGWFGFWSMMVFLLVLTIGFIY 188
Cdd:PRK06073   76 VVLLLLIA------FAPYYTFRDLLLLIVVALVLM 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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