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Conserved domains on  [gi|1678311732|gb|TMW80177|]
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hypothetical protein EJD97_023142 [Solanum chilense]

Protein Classification

photosystem I reaction center subunit VIII( domain architecture ID 10000150)

photosystem I reaction center subunit VIII may help in the organization of the PsaL subunit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psaI CHL00186
photosystem I subunit VIII; Validated
 37-72 2.81e-14

photosystem I subunit VIII; Validated


:

Pssm-ID: 177088  Cd Length: 36  Bit Score: 59.60  E-value: 2.81e-14
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1678311732 37 MTNLNLPSIFGPLVGLVFPAIAMASLFLHVQKNKIV 72
Cdd:CHL00186   1 MTASNLPSILVPLVGLVFPAIAMASLFLYIQKDKIV 36
 
Name Accession Description Interval E-value
psaI CHL00186
photosystem I subunit VIII; Validated
 37-72 2.81e-14

photosystem I subunit VIII; Validated


Pssm-ID: 177088  Cd Length: 36  Bit Score: 59.60  E-value: 2.81e-14
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1678311732 37 MTNLNLPSIFGPLVGLVFPAIAMASLFLHVQKNKIV 72
Cdd:CHL00186   1 MTASNLPSILVPLVGLVFPAIAMASLFLYIQKDKIV 36
PS_I_psaI TIGR03052
photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit ...
 41-68 1.70e-07

photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. [Energy metabolism, Photosynthesis]


Pssm-ID: 132096  Cd Length: 31  Bit Score: 42.71  E-value: 1.70e-07
                         10        20
                 ....*....|....*....|....*...
gi 1678311732 41 NLPSIFGPLVGLVFPAIAMASLFLHVQK 68
Cdd:TIGR03052  2 WLPSIFVPLVGLVFPAVFMALLFRYIEA 29
PSI_8 pfam00796
Photosystem I reaction centre subunit VIII;
43-66 9.07e-06

Photosystem I reaction centre subunit VIII;


Pssm-ID: 425874  Cd Length: 24  Bit Score: 37.92  E-value: 9.07e-06
                         10        20
                 ....*....|....*....|....
gi 1678311732 43 PSIFGPLVGLVFPAIAMASLFLHV 66
Cdd:pfam00796  1 PSIFVPLVGLVFPAVAMALLFLYI 24
 
Name Accession Description Interval E-value
psaI CHL00186
photosystem I subunit VIII; Validated
 37-72 2.81e-14

photosystem I subunit VIII; Validated


Pssm-ID: 177088  Cd Length: 36  Bit Score: 59.60  E-value: 2.81e-14
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 1678311732 37 MTNLNLPSIFGPLVGLVFPAIAMASLFLHVQKNKIV 72
Cdd:CHL00186   1 MTASNLPSILVPLVGLVFPAIAMASLFLYIQKDKIV 36
PS_I_psaI TIGR03052
photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit ...
 41-68 1.70e-07

photosystem I reaction center subunit VIII; Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. [Energy metabolism, Photosynthesis]


Pssm-ID: 132096  Cd Length: 31  Bit Score: 42.71  E-value: 1.70e-07
                         10        20
                 ....*....|....*....|....*...
gi 1678311732 41 NLPSIFGPLVGLVFPAIAMASLFLHVQK 68
Cdd:TIGR03052  2 WLPSIFVPLVGLVFPAVFMALLFRYIEA 29
PSI_8 pfam00796
Photosystem I reaction centre subunit VIII;
43-66 9.07e-06

Photosystem I reaction centre subunit VIII;


Pssm-ID: 425874  Cd Length: 24  Bit Score: 37.92  E-value: 9.07e-06
                         10        20
                 ....*....|....*....|....
gi 1678311732 43 PSIFGPLVGLVFPAIAMASLFLHV 66
Cdd:pfam00796  1 PSIFVPLVGLVFPAVAMALLFLYI 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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