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Conserved domains on  [gi|1681712996|gb|TNK92211|]
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30S ribosomal protein S11, partial [Mycoplasmopsis pullorum]

Protein Classification

uS11 family ribosomal protein( domain architecture ID 766)

uS11 family ribosomal protein such as mammalian 40S ribosomal protein S14, yeast mitochondrial 37S ribosomal protein S18, and mammalian mitochondrial 28S ribosomal protein S11.

Gene Ontology:  GO:0006412|GO:0000028|GO:0003735|GO:0070181

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S11 super family cl00332
Ribosomal protein S11;
1-75 3.64e-30

Ribosomal protein S11;


The actual alignment was detected with superfamily member PRK05309:

Pssm-ID: 444843  Cd Length: 128  Bit Score: 102.55  E-value: 3.64e-30
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1681712996   1 MARKSKKKNITSGVAHIHSTNQNTIVTFADENGNVIAWSSAGAIGYKGTKKKTPYAAGLAAAAAAEAAKEHGIKT 75
Cdd:PRK05309    6 TVKKKVKKNIPSGVAHIHATFNNTIVTITDRQGNVISWASAGGLGFKGSRKSTPYAAQVAAEDAAKKAKEHGMKT 80
 
Name Accession Description Interval E-value
PRK05309 PRK05309
30S ribosomal protein S11; Validated
 1-75 3.64e-30

30S ribosomal protein S11; Validated


Pssm-ID: 180007  Cd Length: 128  Bit Score: 102.55  E-value: 3.64e-30
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1681712996   1 MARKSKKKNITSGVAHIHSTNQNTIVTFADENGNVIAWSSAGAIGYKGTKKKTPYAAGLAAAAAAEAAKEHGIKT 75
Cdd:PRK05309    6 TVKKKVKKNIPSGVAHIHATFNNTIVTITDRQGNVISWASAGGLGFKGSRKSTPYAAQVAAEDAAKKAKEHGMKT 80
RpsK COG0100
Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S11 ...
 2-75 3.79e-26

Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S11 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439870  Cd Length: 130  Bit Score: 92.49  E-value: 3.79e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1681712996   2 ARKSKKKNITSGVAHIHSTNQNTIVTFADENGNVIAWSSAGAIGYKGTKKKTPYAAGLAAAAAAEAAKEHGIKT 75
Cdd:COG0100     9 TKKKKKKNVPSGIAHIHSTFNNTIVTITDLQGNVIAWSSAGTVGFKGSRKSTPYAAQVAAEKAAKKAMEHGLKE 82
uS11_bact TIGR03632
ribosomal protein uS11, bacterial form; This model describes the bacterial 30S ribosomal ...
 13-75 5.52e-22

ribosomal protein uS11, bacterial form; This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274689  Cd Length: 108  Bit Score: 81.51  E-value: 5.52e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1681712996  13 GVAHIHSTNQNTIVTFADENGNVIAWSSAGAIGYKGTKKKTPYAAGLAAAAAAEAAKEHGIKT 75
Cdd:TIGR03632   1 GIVHIHATFNNTIVTITDPQGNVLSWASAGTSGFKGSRKSTPYAAQMAAEKAAKKAMEMGMKT 63
Ribosomal_S11 pfam00411
Ribosomal protein S11;
13-75 5.94e-16

Ribosomal protein S11;


Pssm-ID: 306838  Cd Length: 109  Bit Score: 65.94  E-value: 5.94e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1681712996  13 GVAHIHSTNQNTIVTFADENGNVIAWSSAGAIGYKGTKKKTPYAAGLAAAAAAEAAKEHGIKT 75
Cdd:pfam00411   1 GVAHIQASFNNTIITITDITGRETLWKSAGGMGFKGSRKSSPYAAQLAAEDAARAAKDLGIKA 63
 
Name Accession Description Interval E-value
PRK05309 PRK05309
30S ribosomal protein S11; Validated
 1-75 3.64e-30

30S ribosomal protein S11; Validated


Pssm-ID: 180007  Cd Length: 128  Bit Score: 102.55  E-value: 3.64e-30
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1681712996   1 MARKSKKKNITSGVAHIHSTNQNTIVTFADENGNVIAWSSAGAIGYKGTKKKTPYAAGLAAAAAAEAAKEHGIKT 75
Cdd:PRK05309    6 TVKKKVKKNIPSGVAHIHATFNNTIVTITDRQGNVISWASAGGLGFKGSRKSTPYAAQVAAEDAAKKAKEHGMKT 80
RpsK COG0100
Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S11 ...
 2-75 3.79e-26

Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S11 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439870  Cd Length: 130  Bit Score: 92.49  E-value: 3.79e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1681712996   2 ARKSKKKNITSGVAHIHSTNQNTIVTFADENGNVIAWSSAGAIGYKGTKKKTPYAAGLAAAAAAEAAKEHGIKT 75
Cdd:COG0100     9 TKKKKKKNVPSGIAHIHSTFNNTIVTITDLQGNVIAWSSAGTVGFKGSRKSTPYAAQVAAEKAAKKAMEHGLKE 82
uS11_bact TIGR03632
ribosomal protein uS11, bacterial form; This model describes the bacterial 30S ribosomal ...
 13-75 5.52e-22

ribosomal protein uS11, bacterial form; This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274689  Cd Length: 108  Bit Score: 81.51  E-value: 5.52e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1681712996  13 GVAHIHSTNQNTIVTFADENGNVIAWSSAGAIGYKGTKKKTPYAAGLAAAAAAEAAKEHGIKT 75
Cdd:TIGR03632   1 GIVHIHATFNNTIVTITDPQGNVLSWASAGTSGFKGSRKSTPYAAQMAAEKAAKKAMEMGMKT 63
rps11 CHL00041
ribosomal protein S11
 4-74 1.19e-18

ribosomal protein S11


Pssm-ID: 176982  Cd Length: 116  Bit Score: 72.98  E-value: 1.19e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1681712996   4 KSKKKNITSGVAHIHSTNQNTIVTFADENGNVIAWSSAGAIGYKGTKKKTPYAAGLAAAAAAEAAKEHGIK 74
Cdd:CHL00041    5 RKSKRKIPKGVIHIQASFNNTIVTVTDVRGRVISWSSAGACGFKGARKGTPFAAQTAAENAIRTVIDQGMK 75
Ribosomal_S11 pfam00411
Ribosomal protein S11;
13-75 5.94e-16

Ribosomal protein S11;


Pssm-ID: 306838  Cd Length: 109  Bit Score: 65.94  E-value: 5.94e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1681712996  13 GVAHIHSTNQNTIVTFADENGNVIAWSSAGAIGYKGTKKKTPYAAGLAAAAAAEAAKEHGIKT 75
Cdd:pfam00411   1 GVAHIQASFNNTIITITDITGRETLWKSAGGMGFKGSRKSSPYAAQLAAEDAARAAKDLGIKA 63
rps11p PRK09607
30S ribosomal protein S11P; Reviewed
 5-73 1.39e-04

30S ribosomal protein S11P; Reviewed


Pssm-ID: 236588  Cd Length: 132  Bit Score: 37.29  E-value: 1.39e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1681712996   5 SKKKNITSGVAHIHSTNQNTIVTFADENG-NVIAWSSAGAIGYKGTKKKTPYAAGLAAAAAAEAAKEHGI 73
Cdd:PRK09607    2 SSMRKEKWGIAHIYASFNNTIITITDLTGaETIAKSSGGMVVKADRDESSPYAAMQAAEKAAEDAKEKGI 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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