|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
1-475 |
0e+00 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 811.64 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 1 MFKNAFANLQKVGKALMLPVSVLPVAGILLGVGAANFSWLPDIVSNLMEQAGGSVFGQMALLFAVGVALGFTNNDGVSGL 80
Cdd:PRK11089 1 MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVVSHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 81 SAIVGYGIMVATLKVMAMAM---------GVEKIDTGVLGGILAGGVAAWAFNRFYKIQLPEYLGFFAGKRAVPIITGFL 151
Cdd:PRK11089 81 AAVVAYGIMVKTMAVVAPLVlhlpaeeiaAKHLADTGVLGGIIAGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 152 SIVLGVILSFIWPPIGAAIATFSDWAAHQNPVLAFGIYGVVERSLIPFGLHHIWNVPFFYEAGTCVNGAGETVHGIMTCF 231
Cdd:PRK11089 161 AIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGIYGFVERSLVPFGLHHIWNVPFQMQIGEYTNAAGQVFHGDIPRY 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 232 LTADDASraagngfGQLAGGYLFKMFGLPAAAFAIAHCAKPENRAKVMGIMASAALTSFLTGITEPIEFSFLFIAPVLYG 311
Cdd:PRK11089 241 MAGDPTA-------GKLSGGFLFKMYGLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYI 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 312 IHAVLAGLAYVLTNSLGVVHGHTFSNGFIDFVVQSPRAENMPMLVGLGVAYAVLYYVVFTFVIRALDLKTPGREDEAADE 391
Cdd:PRK11089 314 IHAILAGLAFPICILLGMRDGTSFSHGLIDFIVLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGREDETEDA 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 392 SSAQGTELAGELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKLGAAGVVVVSGGVQAIFGTKSDNLKTEMDEW 471
Cdd:PRK11089 394 KATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEY 473
|
....
gi 1704837663 472 IRNH 475
Cdd:PRK11089 474 IRNH 477
|
|
| PTS-II-BC-glcB |
TIGR02002 |
PTS system, glucose-specific IIBC component; This model represents the combined B and C ... |
2-474 |
0e+00 |
|
PTS system, glucose-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273923 [Multi-domain] Cd Length: 502 Bit Score: 573.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 2 FKNAFANLQKVGKALMLPVSVLPVAGILLGVGAAN-----FSWLP-------DIVSNLMEQAGGSVFGQMALLFAVGVAL 69
Cdd:TIGR02002 1 FKKAFGQLQKIGKALMLPVAVLPVAGILLGFGNANqnnqvFSFLPflhmewiQLVSKVMEAAGGIIFANLPLIFAIGVAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 70 GFTNNDGVSGLSAIVGYGIMVATLKVM---------------AMAMGVEKIDTGVLGGILAGGVAAWAFNRFYKIQLPEY 134
Cdd:TIGR02002 81 GLAGNDGVAGLAALVGYLIMNKTMGVVagltllliaseiasfASVLGIPTLQTGVFGGIIIGAIAAYCYNRFYNIKLPEY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 135 LGFFAGKRAVPIITGFLSIVLGVILSFIWPPIGAAIATFSDWAAHQNPVLAFGIYGVVERSLIPFGLHHIWNVPFFYEAG 214
Cdd:TIGR02002 161 LGFFAGKRFVPIITGLAAIVTGIVLSFIWPPVQDALNTFSHWAAYQNPVVAFFIFGFIERSLIPFGLHHIFNAPFWFEFG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 215 TCVNGAGETVHGIMTCFLtADDASRAAGNGFGQLAGGYLFKMFGLPAAAFAIAHCAKPENRAKVMGIMASAALTSFLTGI 294
Cdd:TIGR02002 241 SYTNEAGNLFRGDQPIFM-AQLKDGVAFTAGGFLSGGFPFMMFGLPAAALAIYHSAKPENKKLVGGLMISAALTSFLTGI 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 295 TEPIEFSFLFIAPVLYGIHAVLAGLAYVLTNSLGVVHGHTFSNGFIDFVVQ--SPRAENMPMLVGLGVAYAVLYYVVFTF 372
Cdd:TIGR02002 320 TEPLEFSFLFVAPILYVIHAILAGLSFPIMILLGVKIGTTFSGGAIDFILYglLSNRSKAWLFIIVGIGYAIIYYFLFRF 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 373 VIRALDLKTPGRED-EAADESSAQGTELAGELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKLGAAGVVVVSG 451
Cdd:TIGR02002 400 LIKKLNLKTPGREDaTAEAKATGEPSELAFDVVAALGGKENITSLDACITRLRVSVADISKVDVAKLKKLGAAGVLVVGN 479
|
490 500
....*....|....*....|...
gi 1704837663 452 GVQAIFGTKSDNLKTEMDEWIRN 474
Cdd:TIGR02002 480 NVQAIFGPKSDTIKSEMHDIIRG 502
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
1-470 |
6.58e-84 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 266.04 E-value: 6.58e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 1 MFKNAFANLQKVGKALMLPVSVLPVAGILLGVGAA--NFSWLPDI-----VSNLMEQAGGSVFGQMALLFAVGVALGFTn 73
Cdd:COG1263 4 KKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALltNPGLLGEGsflsgTYQILNAAGDAVFYFLPLLFAIGAAKGFG- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 74 ndGVSGLSAIVGYGIMVATL-KVMAMAMGVEKI---------DTGVLGGILAGGVAAWaFNRFYKIQLPEYLGFFAgkra 143
Cdd:COG1263 83 --GNPALAAVIGYLLVHPTLlNAYAVAGGYISFlgiptligyQGGVFPGILAGWLAAY-LEKFLKKKLPDALGFFF---- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 144 VPIITGFLSIVLGV-ILSFIWPPIGAAIATFSDWAAHQNPVLAFGIYGVVERSLIPFGLHHIWNVPFFYEAGtcvngage 222
Cdd:COG1263 156 VPILTLLIMVPLALlVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLG-------- 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 223 tvhgimtcfltaddasraaGNGFGQLAGGYLFKMFGLPAAAFAIAHCAKPenRAKVMGIMASAALTSFLTGITEPIEFSF 302
Cdd:COG1263 228 -------------------GTGDDGLFPILAAAMFGQPGAALAVYLKAKP--NKKVKGLAISAALTAFLTGITEPAEFGF 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 303 LFIAPVLYGIHAVLAGLAYVLTNSLGvVHGHTFSN-GFIDFVVQSPRAENMPMLVGLGVAYAVLYYVVFTFVIraldlkt 381
Cdd:COG1263 287 NLVAPKLFIAHAIGGGLGGAIAGLLG-VKAFSFGVgGLIDFPSILNPGATNLLLYLIGLVIAFVYYFVFTFLI------- 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 382 pGREDEAADE----SSAQGTELAGELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKLGAAGVVVVSGGVQAIF 457
Cdd:COG1263 359 -GREDEEEEEklatKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAV 437
|
490
....*....|...
gi 1704837663 458 GTKSDNLKTEMDE 470
Cdd:COG1263 438 GGVGGGGVVIVIV 450
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
13-318 |
3.92e-58 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 194.49 E-value: 3.92e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 13 GKALMLPVSVLPVAGILLGVGAANFS---------WLPDIVSNLMEQAGGSVFGQMALLFAVGVALGFTNNDGVSGLSAI 83
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNLPNDttglpaggfTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGDGVAGAAGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 84 VGYGIMVATLKVMAMAM-----------GVEKIDTGVLGGILAGGVAAWAFNRFYK---IQLPEYLGFFAGKRAVPIITG 149
Cdd:pfam02378 81 IGLLSFNLAAAISVALTaaglsgggnilGIGLGATGVFGAIIPGLLAAYLYNRFEKnitIKLPDSLPFFVGKRFVPIITG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 150 FLS-IVLGVILSFIWPPIGAAIATFSDWAAHQNPVLAFGIYGVVERSLIPFGLHHIWNVPFFYEAGTcvngagetvhgim 228
Cdd:pfam02378 161 FVTlLVIGPVLGLIWPAIQGGLNALGLLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIG------------- 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 229 tcFLTADDASRAAGNGFGQLAGGYLFKMFGLPAAAFAIAHCAKPENRAKVMGIMASAALTSFLTGITEPIEFSFLFIAPV 308
Cdd:pfam02378 228 --GSNPIANQQAYGAGAAHILTGGFDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNP 305
|
330
....*....|
gi 1704837663 309 LYGIHAVLAG 318
Cdd:pfam02378 306 PFFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
397-472 |
3.47e-18 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 78.73 E-value: 3.47e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1704837663 397 TELAGELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKLGAAGVVVVSGGV-QAIFGT-KSDNLKTEMDEWI 472
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQyQVIIGPgVADVYKEAIKLLG 78
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
1-475 |
0e+00 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 811.64 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 1 MFKNAFANLQKVGKALMLPVSVLPVAGILLGVGAANFSWLPDIVSNLMEQAGGSVFGQMALLFAVGVALGFTNNDGVSGL 80
Cdd:PRK11089 1 MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVVSHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 81 SAIVGYGIMVATLKVMAMAM---------GVEKIDTGVLGGILAGGVAAWAFNRFYKIQLPEYLGFFAGKRAVPIITGFL 151
Cdd:PRK11089 81 AAVVAYGIMVKTMAVVAPLVlhlpaeeiaAKHLADTGVLGGIIAGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 152 SIVLGVILSFIWPPIGAAIATFSDWAAHQNPVLAFGIYGVVERSLIPFGLHHIWNVPFFYEAGTCVNGAGETVHGIMTCF 231
Cdd:PRK11089 161 AIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGIYGFVERSLVPFGLHHIWNVPFQMQIGEYTNAAGQVFHGDIPRY 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 232 LTADDASraagngfGQLAGGYLFKMFGLPAAAFAIAHCAKPENRAKVMGIMASAALTSFLTGITEPIEFSFLFIAPVLYG 311
Cdd:PRK11089 241 MAGDPTA-------GKLSGGFLFKMYGLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYI 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 312 IHAVLAGLAYVLTNSLGVVHGHTFSNGFIDFVVQSPRAENMPMLVGLGVAYAVLYYVVFTFVIRALDLKTPGREDEAADE 391
Cdd:PRK11089 314 IHAILAGLAFPICILLGMRDGTSFSHGLIDFIVLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGREDETEDA 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 392 SSAQGTELAGELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKLGAAGVVVVSGGVQAIFGTKSDNLKTEMDEW 471
Cdd:PRK11089 394 KATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEY 473
|
....
gi 1704837663 472 IRNH 475
Cdd:PRK11089 474 IRNH 477
|
|
| PTS-II-BC-glcB |
TIGR02002 |
PTS system, glucose-specific IIBC component; This model represents the combined B and C ... |
2-474 |
0e+00 |
|
PTS system, glucose-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273923 [Multi-domain] Cd Length: 502 Bit Score: 573.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 2 FKNAFANLQKVGKALMLPVSVLPVAGILLGVGAAN-----FSWLP-------DIVSNLMEQAGGSVFGQMALLFAVGVAL 69
Cdd:TIGR02002 1 FKKAFGQLQKIGKALMLPVAVLPVAGILLGFGNANqnnqvFSFLPflhmewiQLVSKVMEAAGGIIFANLPLIFAIGVAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 70 GFTNNDGVSGLSAIVGYGIMVATLKVM---------------AMAMGVEKIDTGVLGGILAGGVAAWAFNRFYKIQLPEY 134
Cdd:TIGR02002 81 GLAGNDGVAGLAALVGYLIMNKTMGVVagltllliaseiasfASVLGIPTLQTGVFGGIIIGAIAAYCYNRFYNIKLPEY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 135 LGFFAGKRAVPIITGFLSIVLGVILSFIWPPIGAAIATFSDWAAHQNPVLAFGIYGVVERSLIPFGLHHIWNVPFFYEAG 214
Cdd:TIGR02002 161 LGFFAGKRFVPIITGLAAIVTGIVLSFIWPPVQDALNTFSHWAAYQNPVVAFFIFGFIERSLIPFGLHHIFNAPFWFEFG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 215 TCVNGAGETVHGIMTCFLtADDASRAAGNGFGQLAGGYLFKMFGLPAAAFAIAHCAKPENRAKVMGIMASAALTSFLTGI 294
Cdd:TIGR02002 241 SYTNEAGNLFRGDQPIFM-AQLKDGVAFTAGGFLSGGFPFMMFGLPAAALAIYHSAKPENKKLVGGLMISAALTSFLTGI 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 295 TEPIEFSFLFIAPVLYGIHAVLAGLAYVLTNSLGVVHGHTFSNGFIDFVVQ--SPRAENMPMLVGLGVAYAVLYYVVFTF 372
Cdd:TIGR02002 320 TEPLEFSFLFVAPILYVIHAILAGLSFPIMILLGVKIGTTFSGGAIDFILYglLSNRSKAWLFIIVGIGYAIIYYFLFRF 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 373 VIRALDLKTPGRED-EAADESSAQGTELAGELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKLGAAGVVVVSG 451
Cdd:TIGR02002 400 LIKKLNLKTPGREDaTAEAKATGEPSELAFDVVAALGGKENITSLDACITRLRVSVADISKVDVAKLKKLGAAGVLVVGN 479
|
490 500
....*....|....*....|...
gi 1704837663 452 GVQAIFGTKSDNLKTEMDEWIRN 474
Cdd:TIGR02002 480 NVQAIFGPKSDTIKSEMHDIIRG 502
|
|
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
9-468 |
5.89e-121 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 361.78 E-value: 5.89e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 9 LQKVGKALMLPVSVLPVAGILLGVGaaNFSWLPD-IVSNLMEQAGGSVFGQMALLFAVGVALGFT-NNDGVSGLSAIVGY 86
Cdd:TIGR01998 5 FQKLGRALMLPIATLPVAALLLRIG--NATHGADlLVANFFIAAGGAIFDNLGLLFAIGVAIGMSkDNDGAAALAGLVAY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 87 GIMVATLKVMAMA----------MGVEKIDTgVLGGILAGGVAAWAFNRFYKIQLPEYLGFFAGKRAVPIITGFLSIVLG 156
Cdd:TIGR01998 83 FVVTKVLSPPPLAaalgikseinMAFSAWKN-VFVGILAGLIAGALYNRFSEIKLPEALSFFSGKRLVPIMAGFVGLVLA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 157 VILSFIWPPIGAAIATFSDWAAHQNPVLAFgIYGVVERSLIPFGLHHIWNVPFFYEagtcVNGAGEtvhgiMTCFLTADD 236
Cdd:TIGR01998 162 ALLGYVWPTLYGGIVAFGESISGLGALGAG-IYGFLNRLLIPTGLHHALNSVFWFD----VAGIND-----FGNFTGGGD 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 237 ASRAAGNGFGQLAGGYLFKMFGLPAAAFAIAHCAKPENRAKVMGIMASAALTSFLTGITEPIEFSFLFIAPVLYGIHAVL 316
Cdd:TIGR01998 232 LNRFKGIAGMFMAGFFPIMMFGLPAAALAMYHTARPERRKQVGGMLLSVAFASFLTGVTEPLEFSFMFLAPVLYALHALL 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 317 AGLAYVLTNSLGVVHGHTFSNGFIDFVVQS--PRAENMPMLVGLGVAYAVLYYVVFTFVIRALDLKTPGREDEAADESSA 394
Cdd:TIGR01998 312 TGLSLFIAAMLHWTAGFSFSAGLIDYVLSFnnPTANQPLMLLVQGLVFFALYYVVFRFAIRRFNLKTPGREDEDPEGATA 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 395 QG--------TELAGELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKL-GAAGVVVVSGGVQAIFGTKSDNLK 465
Cdd:TIGR01998 392 AAvtstgdskMQLAKQYLAALGGHDNLVSIDACITRLRLTLKDTSIVDEPALKALgARGVVKLGKHNLQVILGPLAEIVA 471
|
...
gi 1704837663 466 TEM 468
Cdd:TIGR01998 472 GEM 474
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
4-472 |
2.08e-93 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 296.40 E-value: 2.08e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 4 NAFANLQKVGKALMLPVSVLPVAGILLGVGAANFSWLPDIVsnlmeQAGGSVFGQMALLFAVGVALGFT-NNDGVSGLSA 82
Cdd:PRK10255 2 NILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIA-----QAGGAIFDNLALIFAIGVASSWSkDSAGAAALAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 83 IVGYGIMVAtlkvmAMAMGVEKIDTGVLGGILAGGVAAWAFNRFYKIQLPEYLGFFAGKRAVPIITGFLSIVLGVILSFI 162
Cdd:PRK10255 77 AVGYFVLTK-----AMVTINPEINMGVLAGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 163 WPPIGAAIATFSDWAAHQNpVLAFGIYGVVERSLIPFGLHHIWNVPFFYEAGTCVNGAGETVHGIMTCFLTADDASRAAG 242
Cdd:PRK10255 152 WPPVQHAIHAGGEWIVSAG-ALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFYAGDGTAGMFM 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 243 NGFgqlaggYLFKMFGLPAAAFAIAHCAKPENRAKVMGIMASAALTSFLTGITEPIEFSFLFIAPVLYGIHAVLAGLAYV 322
Cdd:PRK10255 231 SGF------FPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLF 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 323 LTNSLGVVHGHTFSNGFIDFVV--QSPRA-ENMPMLVGLGVAYAVLYYVVFTFVIRALDLKTPGREDEAADESSAQG--- 396
Cdd:PRK10255 305 VATLLGIHAGFSFSAGAIDYALmyNLPAAsQNVWMLLVMGVVFFAIYFVLFSAVIRMFNLKTPGREDKEDEIVTEEAnsn 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 397 -----TELAGELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKLGAAGVVVV-SGGVQAIFGTKSDNLKTEMDE 470
Cdd:PRK10255 385 teeglTQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAMCKRLGASGVVKLnKQTIQVIVGAKAESIGDAMKK 464
|
..
gi 1704837663 471 WI 472
Cdd:PRK10255 465 VV 466
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
1-470 |
6.58e-84 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 266.04 E-value: 6.58e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 1 MFKNAFANLQKVGKALMLPVSVLPVAGILLGVGAA--NFSWLPDI-----VSNLMEQAGGSVFGQMALLFAVGVALGFTn 73
Cdd:COG1263 4 KKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALltNPGLLGEGsflsgTYQILNAAGDAVFYFLPLLFAIGAAKGFG- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 74 ndGVSGLSAIVGYGIMVATL-KVMAMAMGVEKI---------DTGVLGGILAGGVAAWaFNRFYKIQLPEYLGFFAgkra 143
Cdd:COG1263 83 --GNPALAAVIGYLLVHPTLlNAYAVAGGYISFlgiptligyQGGVFPGILAGWLAAY-LEKFLKKKLPDALGFFF---- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 144 VPIITGFLSIVLGV-ILSFIWPPIGAAIATFSDWAAHQNPVLAFGIYGVVERSLIPFGLHHIWNVPFFYEAGtcvngage 222
Cdd:COG1263 156 VPILTLLIMVPLALlVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLG-------- 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 223 tvhgimtcfltaddasraaGNGFGQLAGGYLFKMFGLPAAAFAIAHCAKPenRAKVMGIMASAALTSFLTGITEPIEFSF 302
Cdd:COG1263 228 -------------------GTGDDGLFPILAAAMFGQPGAALAVYLKAKP--NKKVKGLAISAALTAFLTGITEPAEFGF 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 303 LFIAPVLYGIHAVLAGLAYVLTNSLGvVHGHTFSN-GFIDFVVQSPRAENMPMLVGLGVAYAVLYYVVFTFVIraldlkt 381
Cdd:COG1263 287 NLVAPKLFIAHAIGGGLGGAIAGLLG-VKAFSFGVgGLIDFPSILNPGATNLLLYLIGLVIAFVYYFVFTFLI------- 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 382 pGREDEAADE----SSAQGTELAGELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKLGAAGVVVVSGGVQAIF 457
Cdd:COG1263 359 -GREDEEEEEklatKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAV 437
|
490
....*....|...
gi 1704837663 458 GTKSDNLKTEMDE 470
Cdd:COG1263 438 GGVGGGGVVIVIV 450
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
9-469 |
2.48e-80 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 258.89 E-value: 2.48e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 9 LQKVGKALMLPVSVLPVAGILLGVGAA--------NFSWLPDIVSNL----MEQAGGSVFGQMALLFAVGVALGFT-NND 75
Cdd:PRK10110 15 FQQLGKTFMLPVALLSFCGIMLGIGSSlsshdvitLIPFLGNPVLQAiftwMSKIGSFAFSFLPVMFCIAIPLGLArENK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 76 GVSGLSAIVGYGIM------------------VATLKV--MAMAMGVEKIDTGVLGGILAGGVAAWAFNRFYKIQLPEYL 135
Cdd:PRK10110 95 GVAAFAGFVGYAVMnlavnfwltnkgilpttdAAVLKAnnIQSILGIQSIDTGILGAVIAGIIVWMLHERFHNIRLPDAL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 136 GFFAGKRAVPIITGFLSIVLGVILSFIWPPIGAAIATFSDWAAHQNPVLAFgIYGVVERSLIPFGLHHIWNVPF-FYEAG 214
Cdd:PRK10110 175 AFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPM-LFGTGERLLLPFGLHHILVALIrFTDAG 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 215 TCVNGAGETVHGIMTCFLTadDASRAAGNGFGQLAGGYLF--KM----FGLPAAAFAIAHCAKPENRAKVMGIMASAALT 288
Cdd:PRK10110 254 GTQEVCGQTVSGALTIFQA--QLSCPTTHGFSESATRFLSqgKMpaflGGLPGAALAMYHCARPENRHKIKGLLISGVIA 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 289 SFLTGITEPIEFSFLFIAPVLYGIHAVLAGLAYVLTNSLGVVHGHTFSNgFIDFVV----QSPRAENMPMLVGLGVAYAV 364
Cdd:PRK10110 332 CVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGN-IIDFVVfgilHGLSTKWYMVPVVAAIWFVV 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 365 lYYVVFTFVIRALDLKTPGREDEAADESSAQGTELAGE-------LVAAFGGKANITNLDACITRLRVSVADTEQVDQDK 437
Cdd:PRK10110 411 -YYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGKsgynvpaILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQA 489
|
490 500 510
....*....|....*....|....*....|...
gi 1704837663 438 LKKLGAAGVVVVSG-GVQAIFGTKSDNLKTEMD 469
Cdd:PRK10110 490 LKDNRAIGVVQLNQhNLQVVIGPQVQSVKDEMA 522
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
52-329 |
3.40e-61 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 201.39 E-value: 3.40e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 52 GGSVFGQMALLFAVGVALGF-TNNDGVSGLSAIVGYGIMVATLKVMAMAMG------VEKI-DTGVLGGILAGGVAAWAF 123
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFgGNPYLGAALAGILVHPVLNNAMGVGAQAVGnffgfeIAKVgYTGVVGPIIVGAIALALH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 124 NRFYKIQLPEYLGFFAGKRAVPIITGFLSIVLGVILSFIWPPIGaaIATFSDWAAHQNPVLAFGIYGVVERSLIPFGLHH 203
Cdd:TIGR00852 81 ERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPVG--ISALLHWLYSAGGALGGAIFGFLYRLLVPTGLHH 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 204 IWNVPFFYE-AGTCVNGAGETVHGIMTCFLTADDASRA----AGNGFGQLAGGYLFKMFGLPAAAFAIAHCAKPENRAKV 278
Cdd:TIGR00852 159 IFYAIFIQLiAGGTVIGGGQVIPGDALANMAQGGAALAvfftAGDAKFKSIGLPAAFSAGLGITEPAMYGVALRERRPFV 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1704837663 279 MGIMASAALTSFLTGITEPIEFSFLFIAPVLYGIHAVLAGLAYVLTNSLGV 329
Cdd:TIGR00852 239 AGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVLAGSIFTVAIGMGI 289
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
13-318 |
3.92e-58 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 194.49 E-value: 3.92e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 13 GKALMLPVSVLPVAGILLGVGAANFS---------WLPDIVSNLMEQAGGSVFGQMALLFAVGVALGFTNNDGVSGLSAI 83
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNLPNDttglpaggfTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGDGVAGAAGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 84 VGYGIMVATLKVMAMAM-----------GVEKIDTGVLGGILAGGVAAWAFNRFYK---IQLPEYLGFFAGKRAVPIITG 149
Cdd:pfam02378 81 IGLLSFNLAAAISVALTaaglsgggnilGIGLGATGVFGAIIPGLLAAYLYNRFEKnitIKLPDSLPFFVGKRFVPIITG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 150 FLS-IVLGVILSFIWPPIGAAIATFSDWAAHQNPVLAFGIYGVVERSLIPFGLHHIWNVPFFYEAGTcvngagetvhgim 228
Cdd:pfam02378 161 FVTlLVIGPVLGLIWPAIQGGLNALGLLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIG------------- 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 229 tcFLTADDASRAAGNGFGQLAGGYLFKMFGLPAAAFAIAHCAKPENRAKVMGIMASAALTSFLTGITEPIEFSFLFIAPV 308
Cdd:pfam02378 228 --GSNPIANQQAYGAGAAHILTGGFDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNP 305
|
330
....*....|
gi 1704837663 309 LYGIHAVLAG 318
Cdd:pfam02378 306 PFFIPAILAG 315
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
397-472 |
2.13e-21 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 87.87 E-value: 2.13e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1704837663 397 TELAGELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKLGAAGVVVVSGGVQAIFGTKSDNLKTEMDEWI 472
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKLGVKGVVKNGGQVQVIIGPGVDKVADEIEKLL 76
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
397-472 |
3.47e-18 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 78.73 E-value: 3.47e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1704837663 397 TELAGELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKLGAAGVVVVSGGV-QAIFGT-KSDNLKTEMDEWI 472
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQyQVIIGPgVADVYKEAIKLLG 78
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
375-458 |
1.40e-17 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 77.40 E-value: 1.40e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 375 RALDLKTPGREDEAADESSA----QGTELAGELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKLGAAGVVVVS 450
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAgegvKGVFTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLGAHGVNPLQ 80
|
....*...
gi 1704837663 451 GGVQAIFG 458
Cdd:TIGR00826 81 RAVQVISG 88
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
346-475 |
3.06e-14 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 70.51 E-value: 3.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1704837663 346 SPRAENMPMLVGLGVAYAVLYYVVFTFVIRALDLKTPGRED------EAADESSAQGTELAGE----------LVAAFGG 409
Cdd:PRK09702 3 SNHADMMLTQIAIGLCFTLLYFVVFRTLILQFNMCTPGREDaevklySKAEYKASRGQTTAAEpkkeldqaagILQALGG 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1704837663 410 KANITNLDACITRLRVSVADTEQ-VDQDKLKKLGAAGVVVVSGGVQAIFGTKSDNLKTEMDEWIRNH 475
Cdd:PRK09702 83 VGNISSINNCATRLRIALHDMSQtLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLINSH 149
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
402-432 |
2.90e-11 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 57.76 E-value: 2.90e-11
10 20 30
....*....|....*....|....*....|.
gi 1704837663 402 ELVAAFGGKANITNLDACITRLRVSVADTEQ 432
Cdd:pfam00367 2 EILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
397-441 |
5.30e-05 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 45.44 E-value: 5.30e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1704837663 397 TELAGELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKL 441
Cdd:PRK09586 6 SELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTI 50
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
398-441 |
2.59e-04 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 43.25 E-value: 2.59e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1704837663 398 ELAGELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKL 441
Cdd:PRK09796 7 ALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTI 50
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
390-441 |
4.50e-03 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 39.24 E-value: 4.50e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1704837663 390 DESSAQGTELAGELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKL 441
Cdd:PRK14905 268 DPIIHKFSEIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKI 319
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
402-441 |
9.94e-03 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 38.13 E-value: 9.94e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1704837663 402 ELVAAFGGKANITNLDACITRLRVSVADTEQVDQDKLKKL 441
Cdd:PRK11007 12 RLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQL 51
|
|
| |
