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Conserved domains on  [gi|1710944342|gb|TVR03196|]
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peptidase, partial [Desulfovibrionales bacterium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4930 super family cl34839
Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, ...
 1-68 2.06e-25

Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG4930:

Pssm-ID: 443958 [Multi-domain]  Cd Length: 672  Bit Score: 96.87  E-value: 2.06e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1710944342   1 EINLGGSIEAIHNPVSIAEIAVEKEATALLMPVACRRQLIDLSDDMATKVDIQFYSDARDALLKAIVE 68
Cdd:COG4930   605 EMSIGGSIEPVDNLADKLQVALDSGAKRVLIPISSARDLGTVPDDLFTKFQIIFYADPVDAVFKALGV 672
 
Name Accession Description Interval E-value
COG4930 COG4930
Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, ...
 1-68 2.06e-25

Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443958 [Multi-domain]  Cd Length: 672  Bit Score: 96.87  E-value: 2.06e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1710944342   1 EINLGGSIEAIHNPVSIAEIAVEKEATALLMPVACRRQLIDLSDDMATKVDIQFYSDARDALLKAIVE 68
Cdd:COG4930   605 EMSIGGSIEPVDNLADKLQVALDSGAKRVLIPISSARDLGTVPDDLFTKFQIIFYADPVDAVFKALGV 672
 
Name Accession Description Interval E-value
COG4930 COG4930
Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, ...
 1-68 2.06e-25

Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443958 [Multi-domain]  Cd Length: 672  Bit Score: 96.87  E-value: 2.06e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1710944342   1 EINLGGSIEAIHNPVSIAEIAVEKEATALLMPVACRRQLIDLSDDMATKVDIQFYSDARDALLKAIVE 68
Cdd:COG4930   605 EMSIGGSIEPVDNLADKLQVALDSGAKRVLIPISSARDLGTVPDDLFTKFQIIFYADPVDAVFKALGV 672
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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