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Conserved domains on  [gi|2111969733|gb|UCR98707|]
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putative coat protein [Strawberry polerovirus 1]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Luteo_coat super family cl03007
Luteovirus coat protein;
69-205 6.48e-39

Luteovirus coat protein;


The actual alignment was detected with superfamily member pfam00894:

Pssm-ID: 279266  Cd Length: 138  Bit Score: 130.83  E-value: 6.48e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111969733  69 ETLKFTKEDIKRNSSGYITFGPSLSEHPAFSNGNLKAYKHYRITRINVEYLSESTDQAPGAIKFEMDTSLSATKVTSPIH 148
Cdd:pfam00894   1 ETFVFVHDNLNGNATGTVKFGPSLSDCPAIKDGILKAYHKYKITSIKVVFQSEASATDRGCIAYELDTSCKKSALVSYLN 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2111969733 149 RFPIKKNGRYTWTAPHINGQLTRETTSDQCRFLYEATTTSTEPAGVFNFTYDVHLMD 205
Cdd:pfam00894  81 TFNIRKNGSKTFGREIINGQEWYESNKDQFFFLYKGNGKGTDVAGHFRITGRVQLMN 137
 
Name Accession Description Interval E-value
Luteo_coat pfam00894
Luteovirus coat protein;
69-205 6.48e-39

Luteovirus coat protein;


Pssm-ID: 279266  Cd Length: 138  Bit Score: 130.83  E-value: 6.48e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111969733  69 ETLKFTKEDIKRNSSGYITFGPSLSEHPAFSNGNLKAYKHYRITRINVEYLSESTDQAPGAIKFEMDTSLSATKVTSPIH 148
Cdd:pfam00894   1 ETFVFVHDNLNGNATGTVKFGPSLSDCPAIKDGILKAYHKYKITSIKVVFQSEASATDRGCIAYELDTSCKKSALVSYLN 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2111969733 149 RFPIKKNGRYTWTAPHINGQLTRETTSDQCRFLYEATTTSTEPAGVFNFTYDVHLMD 205
Cdd:pfam00894  81 TFNIRKNGSKTFGREIINGQEWYESNKDQFFFLYKGNGKGTDVAGHFRITGRVQLMN 137
 
Name Accession Description Interval E-value
Luteo_coat pfam00894
Luteovirus coat protein;
69-205 6.48e-39

Luteovirus coat protein;


Pssm-ID: 279266  Cd Length: 138  Bit Score: 130.83  E-value: 6.48e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111969733  69 ETLKFTKEDIKRNSSGYITFGPSLSEHPAFSNGNLKAYKHYRITRINVEYLSESTDQAPGAIKFEMDTSLSATKVTSPIH 148
Cdd:pfam00894   1 ETFVFVHDNLNGNATGTVKFGPSLSDCPAIKDGILKAYHKYKITSIKVVFQSEASATDRGCIAYELDTSCKKSALVSYLN 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2111969733 149 RFPIKKNGRYTWTAPHINGQLTRETTSDQCRFLYEATTTSTEPAGVFNFTYDVHLMD 205
Cdd:pfam00894  81 TFNIRKNGSKTFGREIINGQEWYESNKDQFFFLYKGNGKGTDVAGHFRITGRVQLMN 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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