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Conserved domains on  [gi|2161953774|gb|UGC41112|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Lepidochelys kempii]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-110 4.79e-67

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00124:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 457  Bit Score: 208.13  E-value: 4.79e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:MTH00124  225 IAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQ 304

                          90       100       110
                  ....*....|....*....|....*....|
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:MTH00124  305 TPWSLSGAMILMIAHGLTSSMLFCLANTNY 334
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-110 4.79e-67

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 208.13  E-value: 4.79e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:MTH00124  225 IAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQ 304

                          90       100       110
                  ....*....|....*....|....*....|
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:MTH00124  305 TPWSLSGAMILMIAHGLTSSMLFCLANTNY 334
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 2-106 6.49e-31

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 113.64  E-value: 6.49e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   2 AGSMILAAVLLKLGGYGIIRITMMLNPL-SKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:COG1008   242 AGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFAL 321

                          90       100
                  ....*....|....*....|....*.
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLA 106
Cdd:COG1008   322 NPLGLQGAVLQMVSHGLITAALFLLV 347
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-110 1.12e-26

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 101.94  E-value: 1.12e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNP-LSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLT 79
Cdd:TIGR01972 235 TAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFS 314

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2161953774  80 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:TIGR01972 315 FNELGISGAVFQMISHGLITAALFLLVGVLY 345
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-107 1.24e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.61  E-value: 1.24e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:pfam00361 114 TPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAG 193

                          90       100
                  ....*....|....*....|....*..
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLAN 107
Cdd:pfam00361 194 TIYGIQAAIFHLLTHGLFSAGLFLCAG 220
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-110 4.79e-67

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 208.13  E-value: 4.79e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:MTH00124  225 IAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQ 304

                          90       100       110
                  ....*....|....*....|....*....|
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:MTH00124  305 TPWSLSGAMILMIAHGLTSSMLFCLANTNY 334
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-110 6.33e-62

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 194.75  E-value: 6.33e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:MTH00068  225 IAGSMILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQ 304

                          90       100       110
                  ....*....|....*....|....*....|
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:MTH00068  305 TPWSFSGAIILMISHGLTSSALFCLANTNY 334
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-110 1.82e-61

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 193.96  E-value: 1.82e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:MTH00110  225 IAGSMVLAAILLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQ 304

                          90       100       110
                  ....*....|....*....|....*....|
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:MTH00110  305 TPWSFMGATALMIAHGLTSSMLFCLANSNY 334
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-110 1.81e-49

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 162.82  E-value: 1.81e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:MTH00127  226 IAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQ 305

                          90       100       110
                  ....*....|....*....|....*....|
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:MTH00127  306 TPWGFTGALILMIAHGLTSSALFCLANTNY 335
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-110 2.34e-46

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 154.33  E-value: 2.34e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:MTH00206  221 VAGSMVLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSG 300

                          90       100       110
                  ....*....|....*....|....*....|
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:MTH00206  301 SPWGFKGALLLMIAHGLVSSALFCLANLLY 330
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-110 8.42e-41

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 139.73  E-value: 8.42e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLN-PLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLT 79
Cdd:MTH00044  226 VAGSMILAAILLKLGGYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFS 305

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2161953774  80 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:MTH00044  306 GTNWGINGALILMIAHGLVSSALFCLANILY 336
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-110 1.39e-40

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 138.75  E-value: 1.39e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:MTH00163  213 VSGSMILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTF 292

                          90       100       110
                  ....*....|....*....|....*....|
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:MTH00163  293 SYWGLMGSLLMMIGHGLCSSGLFCLANIIY 322
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 1-110 1.35e-38

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 133.04  E-value: 1.35e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:MTH00150  184 VAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLSN 263

                          90       100       110
                  ....*....|....*....|....*....|
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:MTH00150  264 TSWGWVGALIMMVSHGFCSSGLFCLANYTY 293
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-110 6.87e-36

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 126.63  E-value: 6.87e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:MTH00205  217 VSGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSN 296

                          90       100       110
                  ....*....|....*....|....*....|
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:MTH00205  297 TSWGMNGAIIMMVAHGLCSSGMFALANVNY 326
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-110 1.18e-34

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 123.31  E-value: 1.18e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:MTH00014  219 VAGSMILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSN 298

                          90       100       110
                  ....*....|....*....|....*....|
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:MTH00014  299 TSWGWQGALAMMIAHGLCSSALFALANMTY 328
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 2-106 6.49e-31

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 113.64  E-value: 6.49e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   2 AGSMILAAVLLKLGGYGIIRITMMLNPL-SKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:COG1008   242 AGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFAL 321

                          90       100
                  ....*....|....*....|....*.
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLA 106
Cdd:COG1008   322 NPLGLQGAVLQMVSHGLITAALFLLV 347
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-110 1.12e-26

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 101.94  E-value: 1.12e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNP-LSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLT 79
Cdd:TIGR01972 235 TAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFS 314

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2161953774  80 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:TIGR01972 315 FNELGISGAVFQMISHGLITAALFLLVGVLY 345
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 2-106 1.26e-26

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 101.82  E-value: 1.26e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   2 AGSMILAAVLLKLGGYGIIRITMMLNPL-SKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:PRK05846  244 AGSVLLAGILLKMGAYGLLRFSLPLFPDaSHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAG 323

                          90       100
                  ....*....|....*....|....*.
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLA 106
Cdd:PRK05846  324 NQLGIQGAIFQMISHGLSSAALFLLV 349
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-107 1.24e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.61  E-value: 1.24e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQ 80
Cdd:pfam00361 114 TPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAG 193

                          90       100
                  ....*....|....*....|....*..
gi 2161953774  81 TQWAYTGAITLMIAHGLTSSMLFCLAN 107
Cdd:pfam00361 194 TIYGIQAAIFHLLTHGLFSAGLFLCAG 220
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 1-103 1.38e-23

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 93.19  E-value: 1.38e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPF-MVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLT 79
Cdd:MTH00217  238 VAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLiQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFS 317

                          90       100
                  ....*....|....*....|....
gi 2161953774  80 QTQWAYTGAITLMIAHGLTSSMLF 103
Cdd:MTH00217  318 HTIQGLVAAIFLMLAHGLVSSALF 341
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 1-103 4.00e-22

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 89.35  E-value: 4.00e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMV-LALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLT 79
Cdd:MTH00204  241 VAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPLIVmLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFT 320

                          90       100
                  ....*....|....*....|....
gi 2161953774  80 QTQWAYTGAITLMIAHGLTSSMLF 103
Cdd:MTH00204  321 HTIEGLVAAVFLMLAHGFVSSALF 344
ndhD CHL00011
NADH dehydrogenase subunit 4
 5-110 3.11e-20

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 83.84  E-value: 3.11e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   5 MILAAVLLKLGGYGIIRITMMLNPLSKTLSYPF-MVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQTQW 83
Cdd:CHL00011  247 MLLAGILLKMGAYGLIRINMELLPHAHSIFSPWlVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDT 326

                          90       100
                  ....*....|....*....|....*..
gi 2161953774  84 AYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:CHL00011  327 GLNGAILQIISHGFIGAALFFLAGTSY 353
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 1-110 5.84e-19

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 80.35  E-value: 5.84e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPL-SKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLT 79
Cdd:MTH00226  262 VAGSVLLAGILLKLGGYGLVRLSWPILPLgAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVT 341

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2161953774  80 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:MTH00226  342 HDIIGLTGSIFIMLAHGIVSSLLFILVTILY 372
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 3-106 7.60e-18

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 76.87  E-value: 7.60e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   3 GSMILAAVLLKLGGYGIIRItmmLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQTQ 82
Cdd:MTH00094  185 ASMLLAGLLLKLGTAGFLRI---LGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSM 261

                          90       100
                  ....*....|....*....|....
gi 2161953774  83 WAYTGAITLMIAHGLTSSMLFCLA 106
Cdd:MTH00094  262 SGKLSGLMMMLAHGYTSTLMFYLI 285
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
4-110 1.19e-17

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 76.66  E-value: 1.19e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   4 SMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFM-VLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQTQ 82
Cdd:PRK06473  240 SVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLaTWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATP 319

                          90       100
                  ....*....|....*....|....*...
gi 2161953774  83 WAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:PRK06473  320 LSILAAVFQMISHGLISALLFLLVGVVY 347
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 3-110 1.86e-16

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 73.14  E-value: 1.86e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   3 GSMILAAVLLKLGGYGIIRITM-MLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQT 81
Cdd:PRK12561  219 VSMILAGVLLKMGGYALIRFNVqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFT 298

                          90       100
                  ....*....|....*....|....*....
gi 2161953774  82 QWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:PRK12561  299 DLGISGAMLQMISHGLIAAALFFLTGVTY 327
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 4-106 1.03e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 68.25  E-value: 1.03e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   4 SMILAAVLLKLGGYGIIRITMMLNP--LSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQT 81
Cdd:COG0651   240 SALLSGLLTKVGVYAILRVLTLLFGadPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGT 319

                          90       100
                  ....*....|....*....|....*
gi 2161953774  82 QWAYTGAITLMIAHGLTSSMLFCLA 106
Cdd:COG0651   320 PLGLAGALFHLLNHALAKALLFLAA 344
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
2-105 4.17e-14

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 66.66  E-value: 4.17e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   2 AGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPfmVLALWG---VIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATL 78
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGtisVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAA 315

                          90       100
                  ....*....|....*....|....*..
gi 2161953774  79 TQTQWAYTGAITLMIAHGLTSSMLFCL 105
Cdd:PRK07363  316 AGTQLSLLGAVAQMISHGLILALLFHL 342
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 5-110 2.86e-13

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 64.34  E-value: 2.86e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   5 MILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFM-VLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQTQW 83
Cdd:PRK02546  249 MLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLiVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDL 328

                          90       100
                  ....*....|....*....|....*..
gi 2161953774  84 AYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:PRK02546  329 GTSGAMLQMISHGLIGASLFFLVGATY 355
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-103 3.74e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 61.14  E-value: 3.74e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   4 SMILAAVLLKLGGYGIIRI-------TMMLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAA 76
Cdd:PRK12667  258 SAMLSGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMG 337

                          90       100
                  ....*....|....*....|....*..
gi 2161953774  77 TLTQTQWAYTGAITLMIAHGLTSSMLF 103
Cdd:PRK12667  338 IGIGTQLGLAAALFHIINHAIAKSLLF 364
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 4-104 2.10e-10

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 56.09  E-value: 2.10e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   4 SMILAAVLLKLGGYGIIRITMML--NPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQT 81
Cdd:PRK06458  249 SALLSGVLLNVALYAVLRYYILIdaAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGG 328

                          90       100
                  ....*....|....*....|...
gi 2161953774  82 QWAYTGAITLMIAHGLTSSMLFC 104
Cdd:PRK06458  329 PLGIFAALLHMLNHSLTKSAIFF 351
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 4-103 1.43e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.91  E-value: 1.43e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   4 SMILAAVLLKLGGYGIIRITMML--NPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQT 81
Cdd:PRK08676  241 SALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGT 320

                          90       100
                  ....*....|....*....|..
gi 2161953774  82 QWAYTGAITLMIAHGLTSSMLF 103
Cdd:PRK08676  321 PLALFWMLFHMLAHSLVKSGLF 342
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 4-103 2.99e-08

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 49.77  E-value: 2.99e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   4 SMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMV--LALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQT 81
Cdd:PRK08377  241 TVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLViiMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGT 320

                          90       100
                  ....*....|....*....|..
gi 2161953774  82 QWAYTGAITLMIAHGLTSSMLF 103
Cdd:PRK08377  321 QAGVDAGVFHMINHAIVKALLF 342
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-103 3.14e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 49.88  E-value: 3.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   4 SMILAAVLLKLGGYGIIRITM----MLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLT 79
Cdd:PRK08375  237 TALLSGLVTKVAVYALIRIYFtvfgGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLAL 316

                          90       100
                  ....*....|....*....|....
gi 2161953774  80 QTQWAYTGAITLMIAHGLTSSMLF 103
Cdd:PRK08375  317 LTPLALAAGLLHLLHHALMKGALF 340
PRK12650 PRK12650
DUF4040 family protein;
46-106 3.32e-08

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 49.66  E-value: 3.32e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2161953774  46 IMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLA 106
Cdd:PRK12650  284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLI 344
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 4-103 3.12e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 46.91  E-value: 3.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   4 SMILAAVLLKLGGYGIIrITMMLNPLSK------------TLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMG 71
Cdd:PRK08668  231 SAVLSGQLSKLGAYGFL-LVLYVLPGTKlfsefgtyrgvpLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGG 309

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2161953774  72 LIIAATLTQTQWAYTGAITLMIAHGLTSSMLF 103
Cdd:PRK08668  310 YILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 8-103 3.48e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 46.68  E-value: 3.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   8 AAVLLKLGGYGIIRITMMLNpLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQtqwAYTG 87
Cdd:COG1009   250 AATMVKAGVYLLARLSPLFA-LSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVA 325

                          90
                  ....*....|....*.
gi 2161953774  88 AITLMIAHGLTSSMLF 103
Cdd:COG1009   326 ALFHLLTHAFFKALLF 341
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-106 1.91e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 44.72  E-value: 1.91e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2161953774  33 LSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLA 106
Cdd:PRK12662  278 FNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVS 351
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-106 1.94e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 44.56  E-value: 1.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   4 SMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVImtssICLRQTDLKSLIAYSSVSHMGLIIAATLTqtqw 83
Cdd:PRK07234  219 SALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLGVL----FALLEKDLKRMLAFSTISQLGFILAAPLV---- 290

                          90       100
                  ....*....|....*....|...
gi 2161953774  84 aytgAITLMIAHGLTSSMLFCLA 106
Cdd:PRK07234  291 ----GGLYALAHGLVKSTLFLCA 309
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 8-103 9.97e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.60  E-value: 9.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   8 AAVLLKLGGYGIIRITMMLnplSKTLSYPFMVLALWGVIMTSS--ICLRQTDLKSLIAYSSVSHMGLIIAATLTQTQWAY 85
Cdd:PRK12644  242 AAAMVKAGIYLVARLAPGF---ADVPVWRPTVLVLGLATMLLGgwRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAA 318

                          90
                  ....*....|....*...
gi 2161953774  86 TGAITLMIAHGLTSSMLF 103
Cdd:PRK12644  319 LAGLAMLLAHALFKAALF 336
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 53-99 1.62e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 42.03  E-value: 1.62e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2161953774  53 LRQTDLKSLIAYSSVSHMGLIIAATLTQTQWAYTGAITLMIAHGLTS 99
Cdd:COG1007   288 LAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMN 334
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-103 2.83e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 41.49  E-value: 2.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   6 ILAAVLLKLGGYGIIRITMMLNPlSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQTQWAY 85
Cdd:PRK12665  246 VFAGLLTKVGVYAIIRTHTLLFP-GGGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGL 324

                          90
                  ....*....|....*...
gi 2161953774  86 TGAITLMIAHGLTSSMLF 103
Cdd:PRK12665  325 SGAIYYVAHHITVQTTLF 342
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
13-99 3.35e-05

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 40.96  E-value: 3.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774  13 KLGGYGII-RITMM-LNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLTQTQWAYTGAIT 90
Cdd:PRK05777  247 KIAAFAVLlRLLVVaFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLF 326


                  ....*....
gi 2161953774  91 LMIAHGLTS 99
Cdd:PRK05777  327 YLLAYLFMT 335
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 4-76 1.29e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 39.49  E-value: 1.29e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2161953774   4 SMILAAVLLKLGGYGIIRITM-MLNPLSKTLSYPFMVL----ALWGVIMTssicLRQTDLKSLIAYSSVSHMGLIIAA 76
Cdd:PRK06521  245 SALMSGVMLKVAIYGILRVVFdLLGAPGWWWGVLVLALgaisAVLGVLYA----LAEHDLKRLLAYSTIENIGIIFVG 318
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 53-108 4.32e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 37.98  E-value: 4.32e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2161953774  53 LRQTDLKSLIAYSSVSHMGLIIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANT 108
Cdd:PRK12647  278 VRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGI 333
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 8-108 6.98e-04

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 37.26  E-value: 6.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   8 AAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLI---IAATLTQTQWA 84
Cdd:PRK06525  246 AASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMffgLSLAILGSRLA 325

                          90       100
                  ....*....|....*....|....
gi 2161953774  85 YTGAITLMIAHGLTSSMLFCLANT 108
Cdd:PRK06525  326 LEGSIAYIFNHAFAKSLFFLVAGA 349
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
1-106 1.62e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 36.47  E-value: 1.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFMVLALWGVIMTSSI-CLRQTDLKSLIAYSSVSHMGLIIAATLT 79
Cdd:PRK12663  238 TEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLATMAAITMVIGALgALAYKDIRRIAGYQVISSIGFILLGLAL 317

                          90       100
                  ....*....|....*....|....*..
gi 2161953774  80 QTQWAYTGAITLMIAHGLTSSMLFCLA 106
Cdd:PRK12663  318 GTPAGINGAIFYLVHDMVVKTALFLIA 344
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-110 5.09e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 34.92  E-value: 5.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   1 IAGSMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFM-VLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATLT 79
Cdd:PRK07691  241 IAIAALFGALLTKVGVYAIARTFTLFFSHDTSFTHYLIlILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAM 320

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2161953774  80 QTQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:PRK07691  321 MTESGMIGAIYYLIHDMIVKAALFLLIGIMI 351
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-110 6.99e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 34.41  E-value: 6.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161953774   4 SMILAAVLLKLGGYGIIRITMMLNPLSKTLSYPFM-----VLALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLIIAATL 78
Cdd:PRK06589  245 ALLHAVIVVKTGLFCIYKILLYIFGLSYLQRIFAEfnwliFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAF 324

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2161953774  79 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNY 110
Cdd:PRK06589  325 ILTPKALGAAILHLVSHSFAKICLFYSMGSIY 356
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 54-75 8.52e-03

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 34.13  E-value: 8.52e-03
                          10        20
                  ....*....|....*....|..
gi 2161953774  54 RQTDLKSLIAYSSVSHMGLIIA 75
Cdd:PRK12645  294 KQTDLKGILAFSTVSQLGLIMS 315
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 55-73 9.27e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 34.01  E-value: 9.27e-03
                          10
                  ....*....|....*....
gi 2161953774  55 QTDLKSLIAYSSVSHMGLI 73
Cdd:PRK12648  292 QHDLKGLLAYSTISHLGLI 310
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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