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Conserved domains on  [gi|2161959089|gb|UGC41813|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Neobatrachus kunapalari]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-232 7.65e-107

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00068:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 458  Bit Score: 315.32  E-value: 7.65e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMSTMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMV 80
Cdd:MTH00068  224 PIAGSMILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALI 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  81 KSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILL 160
Cdd:MTH00068  304 QTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMV 383

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2161959089 161 SMFKWSPYSILLAGLGIMFTTAYSLYLFWSSQREYLPSHLKSLPPTTTREHILLALHIVPIIILISSPELLF 232
Cdd:MTH00068  384 SLFNWSNWTILITGLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELIS 455
 
Name Accession Description Interval E-value
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-232 7.65e-107

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 315.32  E-value: 7.65e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMSTMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMV 80
Cdd:MTH00068  224 PIAGSMILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALI 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  81 KSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILL 160
Cdd:MTH00068  304 QTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMV 383

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2161959089 161 SMFKWSPYSILLAGLGIMFTTAYSLYLFWSSQREYLPSHLKSLPPTTTREHILLALHIVPIIILISSPELLF 232
Cdd:MTH00068  384 SLFNWSNWTILITGLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELIS 455
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-224 5.36e-42

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 148.31  E-value: 5.36e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMS-TMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATM 79
Cdd:COG1008   240 PTAGSVLLAGVLLKMGGYGLLRFAlPLFPEASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIF 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  80 VKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFIL 159
Cdd:COG1008   320 ALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL 399

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2161959089 160 LSMFKWSPYSILLAGLGIMFTTAYSLYLFwssQREY---LPSHLKSLPPTTTREHILLALHIVPIIIL 224
Cdd:COG1008   400 LGAFQVNPWLAILAALGLILTAAYLLWMY---QRVFfgpLKEELAELPDLNPRELAVLAPLAALILLL 464
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-224 2.55e-35

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 130.44  E-value: 2.55e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMS-TMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATM 79
Cdd:TIGR01972 234 PTAGSVILAGVLLKMGTYGFLRFNlPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIF 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  80 VKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFIL 159
Cdd:TIGR01972 314 SFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLIL 393

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2161959089 160 LSMFKWSPYSILLAGLGIMFTTAYSLYLFwssQREYL----PSHLKSLPPTTTREHILLALHIVPIIIL 224
Cdd:TIGR01972 394 LGSFKVNPVVAFLAALGIVLAAAYMLTLY---KRVFFgelsNPEVAEFPDLNGREIAVLAPLVVLILFL 459
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-176 6.29e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 110.10  E-value: 6.29e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMSTMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMV 80
Cdd:pfam00361 113 PTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  81 KSPWSVSGAMLLMISHGLVSSALFCLA-NTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFIL 159
Cdd:pfam00361 193 GTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272

                         170
                  ....*....|....*..
gi 2161959089 160 LSMFKWSPYSILLAGLG 176
Cdd:pfam00361 273 AAAVAASWIFLVLAGVV 289
 
Name Accession Description Interval E-value
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-232 7.65e-107

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 315.32  E-value: 7.65e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMSTMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMV 80
Cdd:MTH00068  224 PIAGSMILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALI 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  81 KSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILL 160
Cdd:MTH00068  304 QTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMV 383

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2161959089 161 SMFKWSPYSILLAGLGIMFTTAYSLYLFWSSQREYLPSHLKSLPPTTTREHILLALHIVPIIILISSPELLF 232
Cdd:MTH00068  384 SLFNWSNWTILITGLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELIS 455
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-231 9.22e-92

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 277.08  E-value: 9.22e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMSTMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMV 80
Cdd:MTH00124  224 PIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMI 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  81 KSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILL 160
Cdd:MTH00124  304 QTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMT 383

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2161959089 161 SMFKWSPYSILLAGLGIMFTTAYSLYLFWSSQREYLPSHLKSLPPTTTREHILLALHIVPIIILISSPELL 231
Cdd:MTH00124  384 SLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELI 454
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-230 1.66e-78

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 242.88  E-value: 1.66e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMSTMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMV 80
Cdd:MTH00110  224 PIAGSMVLAAILLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILI 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  81 KSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILL 160
Cdd:MTH00110  304 QTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIM 383

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089 161 SMFKWSPYSILLAGLGIMFTTAYSLYLFWSSQREYLPSHLKSLPPTTTREHILLALHIVPIIILISSPEL 230
Cdd:MTH00110  384 SSFSWSNITIILMGLNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKI 453
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-231 1.45e-75

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 235.62  E-value: 1.45e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMSTMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMV 80
Cdd:MTH00127  225 PIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILI 304

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  81 KSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILL 160
Cdd:MTH00127  305 QTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIIT 384

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2161959089 161 SMFKWSPYSILLAGLGIMFTTAYSLYLFWSSQREYLPSHLKSLPPTTTREHILLALHIVPIIILISSPELL 231
Cdd:MTH00127  385 SLFNWSPWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELI 455
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-231 1.04e-70

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 222.51  E-value: 1.04e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMSTMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMV 80
Cdd:MTH00206  220 PVAGSMVLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILS 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  81 KSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILL 160
Cdd:MTH00206  300 GSPWGFKGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIIT 379

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2161959089 161 SMFKWSPYSILLAGLGIMFTTAYSLYLFWSSQREYLPSHLKSLPPTTTREHILLALHIVPIIILISSPELL 231
Cdd:MTH00206  380 SLFSWSNFTLPLLGLGFLFTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-232 6.88e-65

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 207.91  E-value: 6.88e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMSTMIHE-SMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATM 79
Cdd:MTH00044  225 PVAGSMILAAILLKLGGYGLIRLINLFSLpSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIF 304

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  80 VKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFIL 159
Cdd:MTH00044  305 SGTNWGINGALILMIAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLII 384

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2161959089 160 LSMFKWSPYSILLAGLGIMFTTAYSLYLFWSSQREYLPSHLKSLPPTTTREHILLALHIVPIIILISSPELLF 232
Cdd:MTH00044  385 SSIISWSILSFPIIGLATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-232 6.97e-53

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 176.11  E-value: 6.97e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMSTMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMV 80
Cdd:MTH00163  212 PVSGSMILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMT 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  81 KSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILL 160
Cdd:MTH00163  292 FSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLIN 371

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2161959089 161 SMFKWSPYSILLAGLGIMFTTAYSLYLFWSSQREYLPSHLKSLPPTTTREHILLALHIVPIIILISSPELLF 232
Cdd:MTH00163  372 SLISWSKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 1-232 5.08e-52

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 173.49  E-value: 5.08e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMSTMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMV 80
Cdd:MTH00150  183 PVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLS 262

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  81 KSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILL 160
Cdd:MTH00150  263 NTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFP 342

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2161959089 161 SMFKWSPYSILLAGLGIMFTTAYSLYLFWSSQREYLPSHLKSLPPTTTREHILLALHIVPIIILISSPELLF 232
Cdd:MTH00150  343 SLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLF 414
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-232 8.50e-49

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 165.68  E-value: 8.50e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMSTMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMV 80
Cdd:MTH00014  218 PVAGSMILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMS 297

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  81 KSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILL 160
Cdd:MTH00014  298 NTSWGWQGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLT 377

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2161959089 161 SMFKWSPYSILLAGLGIMFTTAYSLYLFWSSQREYLPSHLKSLPPTTTREHILLALHIVPIIILISSPELLF 232
Cdd:MTH00014  378 SILSSSLSTAILLAITSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLIT 449
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-232 4.41e-44

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 153.21  E-value: 4.41e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMSTMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMV 80
Cdd:MTH00205  216 PVSGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFS 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  81 KSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILL 160
Cdd:MTH00205  296 NTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIM 375

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2161959089 161 SMFKWSPYSILLAGLGIMFTTAYSLYLFWSSQREYLPSHLKSLPPTTTREHILLALHIVPIIILISSPELLF 232
Cdd:MTH00205  376 SLLSSSKISGIPLSLISFLSGAYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFI 447
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-224 5.36e-42

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 148.31  E-value: 5.36e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMS-TMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATM 79
Cdd:COG1008   240 PTAGSVLLAGVLLKMGGYGLLRFAlPLFPEASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIF 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  80 VKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFIL 159
Cdd:COG1008   320 ALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL 399

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2161959089 160 LSMFKWSPYSILLAGLGIMFTTAYSLYLFwssQREY---LPSHLKSLPPTTTREHILLALHIVPIIIL 224
Cdd:COG1008   400 LGAFQVNPWLAILAALGLILTAAYLLWMY---QRVFfgpLKEELAELPDLNPRELAVLAPLAALILLL 464
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-232 3.71e-36

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 133.02  E-value: 3.71e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMS-TMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATM 79
Cdd:PRK05846  242 PTAGSVLLAGILLKMGAYGLLRFSlPLFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIF 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  80 VKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFIL 159
Cdd:PRK05846  322 AGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL 401

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2161959089 160 LSMFKWSPYSILLAGLGIMFTTAYSLYLFwssQREY---LPSHLKSLPPTTTREHILLALHIVPIIILISSPELLF 232
Cdd:PRK05846  402 LGSFQVNPVIAFIATTGLILAAVYSLWLY---QRVMfgpVKNEVAKLKDLNGRELLILLPLVALLLLLGVYPKPLL 474
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-224 2.55e-35

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 130.44  E-value: 2.55e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMS-TMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATM 79
Cdd:TIGR01972 234 PTAGSVILAGVLLKMGTYGFLRFNlPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIF 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  80 VKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFIL 159
Cdd:TIGR01972 314 SFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLIL 393

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2161959089 160 LSMFKWSPYSILLAGLGIMFTTAYSLYLFwssQREYL----PSHLKSLPPTTTREHILLALHIVPIIIL 224
Cdd:TIGR01972 394 LGSFKVNPVVAFLAALGIVLAAAYMLTLY---KRVFFgelsNPEVAEFPDLNGREIAVLAPLVVLILFL 459
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 1-224 4.94e-32

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 121.71  E-value: 4.94e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMS-TMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATM 79
Cdd:MTH00204  240 PVAGSVILAGILLKLGGYGFLRFSwPLFPAASEYFAPLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLF 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  80 VKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFIL 159
Cdd:MTH00204  320 THTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSL 399

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2161959089 160 LSMFKWSPYSILLAGLGIMFTTAYSLYLFWSSQREYLPSHLKSLPPTTTREHILLALHIVPIIIL 224
Cdd:MTH00204  400 LAAFEYSLGLGVLVTSGMVWSAAYSLYLYNRISFGGGSNYLLFSRDLNRRELLAILPLIIAIFLL 464
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 1-188 4.27e-30

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 116.30  E-value: 4.27e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMS-TMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATM 79
Cdd:MTH00217  237 PVAGSVILAGVLLKLGGYGFIRFSwPLLPEASEYFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIF 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  80 VKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFIL 159
Cdd:MTH00217  317 SHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSL 396

                         170       180
                  ....*....|....*....|....*....
gi 2161959089 160 LSMFKWSPYSILLAGLGIMFTTAYSLYLF 188
Cdd:MTH00217  397 LAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-176 6.29e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 110.10  E-value: 6.29e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMSTMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMV 80
Cdd:pfam00361 113 PTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  81 KSPWSVSGAMLLMISHGLVSSALFCLA-NTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFIL 159
Cdd:pfam00361 193 GTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272

                         170
                  ....*....|....*..
gi 2161959089 160 LSMFKWSPYSILLAGLG 176
Cdd:pfam00361 273 AAAVAASWIFLVLAGVV 289
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 1-187 1.42e-25

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 103.85  E-value: 1.42e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMS-TMIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATM 79
Cdd:MTH00226  261 PVAGSVLLAGILLKLGGYGLVRLSwPILPLGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLV 340

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  80 VKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFIL 159
Cdd:MTH00226  341 THDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSI 420

                         170       180
                  ....*....|....*....|....*...
gi 2161959089 160 LSMFKWSPYSILLAGLGIMFTTAYSLYL 187
Cdd:MTH00226  421 LSSFNWNPIIGVFVCSGVILSAVYSFYF 448
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 4-224 6.29e-25

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 102.03  E-value: 6.29e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   4 GSMILAGTLLKLGGYGLLRMST-MIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKS 82
Cdd:PRK12561  219 VSMILAGVLLKMGGYALIRFNVqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFT 298

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  83 PWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILLSM 162
Cdd:PRK12561  299 DLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVFLGI 378

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2161959089 163 FKWSPYS-------ILLAGLGIMFTTAYSL----YLFWSSQREYLPShLKSLPPTTTREHILLALHIVPIIIL 224
Cdd:PRK12561  379 TSSDVYSstfrtitILLAAVGLILTPIYLLsmlrRVFYGPRSELLPA-LAVVEDAKPRELFIALSLLVPIIGI 450
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 22-190 3.52e-20

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 87.90  E-value: 3.52e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  22 RMSTMI--HESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLV 99
Cdd:COG0651   257 RVLTLLfgADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALA 336

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089 100 SSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILLSMFKWSPYSILLAGLGIMF 179
Cdd:COG0651   337 KALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSL 416

                         170
                  ....*....|.
gi 2161959089 180 TTAYSLYLFWS 190
Cdd:COG0651   417 LTLAYFVRIFG 427
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 35-222 3.04e-19

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 85.91  E-value: 3.04e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  35 APPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERT 114
Cdd:PRK02546  279 APLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRT 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089 115 NSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILLSMFKWSPYS-------ILLAGLGIMFTTAYSLYL 187
Cdd:PRK02546  359 HTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVAELMVFVGFATSDAYTlpfrvvvVFLAAVGVILTPIYLLSM 438

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2161959089 188 ----FWSSQREYLPSHLKsLPPTTTREHILLALHIVPII 222
Cdd:PRK02546  439 lreiFFGPENKELVSHEK-LVDAEPREVFIIACLLVPII 476
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
34-224 3.51e-19

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 85.52  E-value: 3.51e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  34 LAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYER 113
Cdd:PRK06473  270 LAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKK 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089 114 TNSRTMIILQG---SQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILLSMFKWSPYSILLAGLGIMFTTAYSLYLFWS 190
Cdd:PRK06473  350 TGSRDVDVLRGllnPERGLPITGSLMILGVMASAGIPGMVGFIAEFLVFRGSFPIFPVQTLLCMIGTGLTAVYFLLLVNR 429

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2161959089 191 SQREYLPSHLKSLPPTTTREHILLALHIVPIIIL 224
Cdd:PRK06473  430 VFFGRLTAELSNLPRVLWSERLPALVLAVLIVVL 463
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 32-179 1.30e-17

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 80.74  E-value: 1.30e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  32 HPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAY 111
Cdd:PRK06458  278 DFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVL 357

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2161959089 112 ERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILLSMFK---WSPYSILLAGLGIMF 179
Cdd:PRK06458  358 QKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLArgpLLIAILLLLLLTLAF 428
ndhD CHL00011
NADH dehydrogenase subunit 4
 35-185 9.08e-16

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 75.75  E-value: 9.08e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  35 APPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERT 114
Cdd:CHL00011  277 SPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089 115 nsRTMIILQGSQVVLPLAAAWWLLAT--MLNMALPPSTNFMGELFILLSMFKWSPYSIL-------LAGLGIMFTTAYSL 185
Cdd:CHL00011  357 --RLVYLDEMGGIAIPMPKIFTMFSSfsMASLALPGMSGFVAELIVFFGIITSQKYLLMpkilitfVMAIGMILTPIYLL 434
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 39-191 6.11e-15

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 73.02  E-value: 6.11e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  39 IIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRT 118
Cdd:MTH00094  217 IIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRL 296

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2161959089 119 MIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILLSMFKWSPYSILLAGLGIMFTTAYSLYLFWSS 191
Cdd:MTH00094  297 IYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSS 369
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
26-231 3.23e-13

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 68.20  E-value: 3.23e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  26 MIHESMHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFC 105
Cdd:PRK07363  262 LFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFH 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089 106 LANTAYERTNSRTMIILQGSQVV---LPLAAAWWLLATMLNMALPPSTNFMGELFILLSMFKWSPYSILLAGLGIMFTTA 182
Cdd:PRK07363  342 LVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAV 421

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2161959089 183 YSLYLFWSSQREYLPSHLKSLPPTTTREHILLALHIVPIIILISSPELL 231
Cdd:PRK07363  422 YFVILLNRTCFGRLDNKLAYYPKVLWSEKIPALILTALILFLGVQPNWL 470
PRK12650 PRK12650
DUF4040 family protein;
38-185 2.21e-11

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 62.75  E-value: 2.21e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  38 LIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSR 117
Cdd:PRK12650  275 LIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTR 354

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2161959089 118 TMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNF-----MGELFILLSMFKWSPYSILL-AGLGIMFTTAYSL 185
Cdd:PRK12650  355 DIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFvskegMLTAFLEAPGGNAGVVLLLVgAALGAVFTFAYSA 428
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-181 3.57e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 61.91  E-value: 3.57e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  34 LAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYER 113
Cdd:PRK12667  294 LSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHA 373

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2161959089 114 TNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILLSMFKWSPYsiLLAGLGIMFTT 181
Cdd:PRK12667  374 AGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFY--LPALVLLIASA 439
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 38-177 1.50e-10

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 60.32  E-value: 1.50e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  38 LIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSR 117
Cdd:PRK12647  262 LPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTR 341

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089 118 TMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILLSMFKWSPYSILLAGLGI 177
Cdd:PRK12647  342 DITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTVAAV 401
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-225 1.01e-09

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 57.84  E-value: 1.01e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089   1 PVAGSMILAGTLLKLGGYGLLRMSTMIHES--MHPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAAT 78
Cdd:PRK08676  237 PSVVSALLSGTVLNIGIYGILRLSALLRQSgaAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  79 MVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFI 158
Cdd:PRK08676  317 GIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFI 396

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2161959089 159 LLSMFKWSPYsILLAGLGIMFTTAYSLYLFwssqreYLPSHLKSLPPTTTREHILLALHI-VPIIILI 225
Cdd:PRK08676  397 LLQLGGISVW-LVLAVLLLLLLAASSFAIF------LLKAFTRVSEGNADRPVFRTPLSMkLPIVIIL 457
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-216 1.31e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 54.50  E-value: 1.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  33 PLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYE 112
Cdd:PRK08375  269 GLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEV 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089 113 RTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILL-SMFKWSPYSILLAGLGIMFTTAYSL----YL 187
Cdd:PRK08375  349 TYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVgAVEAGQWLVLAVLLASSLLALLYFLriwyRA 428

                         170       180
                  ....*....|....*....|....*....
gi 2161959089 188 FWSSQREYLPSHLKSLPPTTTREHILLAL 216
Cdd:PRK08375  429 FFGPPPPGSEAPKQEAPLGMLAPSLALAL 457
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 38-202 1.49e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 54.44  E-value: 1.49e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  38 LIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSR 117
Cdd:PRK06589  283 LIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKED 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089 118 TMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILLSMFKWS--PYSILLAGLGIMFTTAYSLYLFWSSQREY 195
Cdd:PRK06589  363 QVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNqpWLSIIVMLVVIASSILSALYLLKILSSIY 442


                  ....*..
gi 2161959089 196 LPSHLKS 202
Cdd:PRK06589  443 KPSLSEN 449
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-177 5.97e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 52.43  E-value: 5.97e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  33 PLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYE 112
Cdd:PRK12662  277 PFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISY 356

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2161959089 113 RTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILLSMFK---WSPYSILLAGLGI 177
Cdd:PRK12662  357 HFGTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKsnaWIGLVVLLVGSGL 424
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 38-190 2.59e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 50.54  E-value: 2.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  38 LIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSR 117
Cdd:PRK08377  276 VIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGT 355

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2161959089 118 TMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFmgelfillsmfkWSPYSILLAGLGIMFTTAYSLYLFWS 190
Cdd:PRK08377  356 EIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVF------------WSKFRIILAGLSAGYTWPVALVLGAS 416
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 55-224 2.85e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 50.54  E-value: 2.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  55 RQTDLKSLIAFSSVSHMGLVVAATMVKspwSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAA 134
Cdd:COG1009   295 AQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLGAGSVIHATGTRDIRKMGGLRKKMPITAI 371

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089 135 WWLLATMLNMALPPSTNFMGELFILLSMFKWSPYSILLAGLGI---MFTTAYSLYLFWssqreyLPSHLKSLPPTTTREH 211
Cdd:COG1009   372 TFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALlgaFLTAFYSFRLFF------LVFFGKPRPKTPKHPH 445

                         170
                  ....*....|...
gi 2161959089 212 ILLALHIVPIIIL 224
Cdd:COG1009   446 ESPWLMTLPLVVL 458
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 55-189 9.79e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.15  E-value: 9.79e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  55 RQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAA 134
Cdd:PRK12644  287 RQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALFLVVGIIDHSTGTRDIRKLSGLGRRQPVLAV 366

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2161959089 135 WWLLATMLNMALPPSTNFMG-----ELFILLSMFKWsPYSILLAG--LGIMFTTAYSLYLFW 189
Cdd:PRK12644  367 VAALAAASMAGLPPLLGFVAkeaalEAVLHDGALGP-AGPVVLAGivLGSILTVAYSLRFLW 427
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-217 5.51e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 46.48  E-value: 5.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  34 LAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVkspwsvsgAMLLMISHGLVSSALFCLANTAYER 113
Cdd:PRK07234  244 LDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLV--------GGLYALAHGLVKSTLFLCAGALPSR 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089 114 TNSRTMIILQGSQVVLPLAaawwlLATMLNMALPPSTNFMGELFILLSMFKWSPYSILLAGLGIMFTTAYSLYLFWSSQR 193
Cdd:PRK07234  316 NFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLKNLLPWQAIALNLAAVGTAASFWKFIFLPFSADD 390

                         170       180
                  ....*....|....*....|....
gi 2161959089 194 EylpshlKSLPPTTTREHILLALH 217
Cdd:PRK07234  391 E------DKKPLPGFWNAIALLLG 408
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 32-180 2.41e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 44.72  E-value: 2.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  32 HPLAPPLIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALF-CLANTA 110
Cdd:COG1007   266 ADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAFaVILLLS 345

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2161959089 111 YERTNSRTMIILQGSQVVLPLAAAwWLLATMLNMA-LPPSTNFMGELFILLSMfkWSPYSILLAGLGIMFT 180
Cdd:COG1007   346 RKGGEAEEIEDLAGLARRSPLLAL-AMTIFLLSLAgIPPTAGFFGKFYVFSAA--VEAGLYWLAVIAVLNS 413
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
38-156 5.32e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 43.48  E-value: 5.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  38 LIIFAMCGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSR 117
Cdd:PRK06277  269 LIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTS 348

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2161959089 118 TMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGEL 156
Cdd:PRK06277  349 NLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKL 387
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 56-207 7.12e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 43.42  E-value: 7.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  56 QTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAW 135
Cdd:PRK12665  294 QSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVL 373

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089 136 WLLATMLNMALPPSTNFMGELFIL---LSMFKWSPYSILLAGLGIMFTTAYSL-----YLFWSSQREYLPSHLKSLPPTT 207
Cdd:PRK12665  374 FFVPALNLGGIPPFSGFIGKVALLeagAEDGTWLAWALVAGGVVTSLLTLYAVarvwtKAFWRAREDAPEGHLADARPAP 453
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 26-219 1.37e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 42.24  E-value: 1.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  26 MIHESMHPLAPPLIIFAMCGVVAsallcsrQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFC 105
Cdd:PRK07691  273 FTHYLILILALLTIIFGVIGAVA-------YFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFL 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089 106 LANTAYERTNS---RTMIILQGSQVVLplaaAWWLLATMLNMA-LPPSTNFMGELFILLSMFKWSPYSILLAGLGIMFTT 181
Cdd:PRK07691  346 LIGIMIKITGTtdlKKMGGLIKRYPVL----GWMFFIAALSLAgIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLV 421

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2161959089 182 AYS-----LYLFWSSQREYLPSHLKSLPPTTTREHILLALHIV 219
Cdd:PRK07691  422 LYSvikifLKGFWGEPKGYDLNNKVPVKKLLLPAVVLVAITIL 464
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-164 4.42e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.87  E-value: 4.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  55 RQTDLKSLIAFSSVSHMGLV-----------VAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQ 123
Cdd:PRK08667  290 KEHDLKGLLAYSSIENIGIIlmgiglyvifgVYGLDTLALLALGGALFHSLNHALFKSLLFLTAGSVVHATGTRNIEKMG 369

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2161959089 124 GSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILLSMFK 164
Cdd:PRK08667  370 GLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFFQ 410
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 46-152 4.49e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 40.75  E-value: 4.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  46 VVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGS 125
Cdd:PRK08668  283 IIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTTKISEMGGL 362

                          90       100
                  ....*....|....*....|....*..
gi 2161959089 126 QVVLPLAAAWWLLATMLNMALPPSTNF 152
Cdd:PRK08668  363 IEKMPFTFAMYLVAIISLAGIPPMSGF 389
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 56-185 8.44e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 40.17  E-value: 8.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  56 QTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAW 135
Cdd:PRK12648  292 QHDLKGLLAYSTISHLGLITLLLGLGSPLAAVAAIFHIINHATFKASLFMAAGIIDHETGTRDMRRLSGLRRLMPITATL 371

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2161959089 136 WLLATmLNMALPPSTN-FMG-ELF----ILLSMFKWSPYSI-LLAGLGIMFTTAYSL 185
Cdd:PRK12648  372 AMVAA-AAMAGVPLLNgFLSkEMFfaetLDTHLLGSLDWLLpVAATLAGAFSVAYSL 427
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
55-104 8.93e-04

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 39.80  E-value: 8.93e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2161959089  55 RQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALF 104
Cdd:PRK05777  290 SQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAF 339
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 38-182 1.05e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 39.70  E-value: 1.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  38 LIIFAMCGVVASALLCSRQTDLKSLIAFSSVSH-----MGLVVAATMVKSPWSVS-------GAMLLMISHGLVSSALFC 105
Cdd:PRK08376  290 IIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQigymlLGLGVGLAALGDPAMASygeialaGGIYHIVNHALYKALLFL 369

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2161959089 106 LANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILLSMFKWSPYSILLAGLGIMFTTA 182
Cdd:PRK08376  370 TAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNPILGVIAMIGSVLTLA 446
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 88-175 4.53e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 37.88  E-value: 4.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959089  88 GAMLLMISHGLVSSALFCLANTAYERTNSRTMIILQGSQVVLPLAAAWWLLATMLNMALPPSTNFMGELFILLSMFKWSP 167
Cdd:PRK08042  309 GGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSN 388


                  ....*...
gi 2161959089 168 YSILLAGL 175
Cdd:PRK08042  389 SGAFVARL 396
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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