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Conserved domains on  [gi|2258056879|gb|USL69943|]
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superinfection exclusion protein [Salmonella enterica subsp. enterica serovar Indiana]

Protein Classification

PHA01516 family protein( domain architecture ID 10009795)

PHA01516 family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PHA01516 PHA01516
hypothetical protein
1-98 4.38e-70

hypothetical protein


:

Pssm-ID: 107038  Cd Length: 98  Bit Score: 204.04  E-value: 4.38e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258056879   1 MKLRVWHIPQVPMKPFIVEVASVEEGVRVMDALADYDAFQYDNNIKPDYCNANGLEMWDESLTDQDLEEMELTDRWVDWY 80
Cdd:PHA01516    1 MKLRVWHIPQVPMKPFIVEVASVEEGVRVMDALADYDAFQYDNNIKPDYCNANGLQMWDESLTDQDLEEMELTDRWVDWY 80
                          90
                  ....*....|....*...
gi 2258056879  81 SECQCYDDPREYIESLKE 98
Cdd:PHA01516   81 SECQCYDDPREYLESLKE 98
 
Name Accession Description Interval E-value
PHA01516 PHA01516
hypothetical protein
1-98 4.38e-70

hypothetical protein


Pssm-ID: 107038  Cd Length: 98  Bit Score: 204.04  E-value: 4.38e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258056879   1 MKLRVWHIPQVPMKPFIVEVASVEEGVRVMDALADYDAFQYDNNIKPDYCNANGLEMWDESLTDQDLEEMELTDRWVDWY 80
Cdd:PHA01516    1 MKLRVWHIPQVPMKPFIVEVASVEEGVRVMDALADYDAFQYDNNIKPDYCNANGLQMWDESLTDQDLEEMELTDRWVDWY 80
                          90
                  ....*....|....*...
gi 2258056879  81 SECQCYDDPREYIESLKE 98
Cdd:PHA01516   81 SECQCYDDPREYLESLKE 98
GP17 pfam17420
Superinfection exclusion gene product 17; Bacteriophages infect host cells by injecting their ...
1-98 9.40e-60

Superinfection exclusion gene product 17; Bacteriophages infect host cells by injecting their genome through the cell wall. To this end, tailed bacteriophages have evolved complex tail machines that extend from a unique capsid vertex, providing both an attachment point to the host surface, and a channel for genome-ejection through the cell envelope. Family members of this domain are putative gp17 proteins involved in genome delivery tail machine in Entereobacteria phage p22 and Salmonella phage ViI. Gp17 found in other bacteriophages such as SPP1 (siphophage SPP1, a lytic Bacillus subtilis phage) has been identified as a tail completion protein adopting an alpha/beta fold, and found to be located at the interface between the head-to-tail connector and the tail of bacteriophage SPP1.


Pssm-ID: 340135  Cd Length: 98  Bit Score: 177.79  E-value: 9.40e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258056879   1 MKLRVWHIPQVPMKPFIVEVASVEEGVRVMDALADYDAFQYDNNIKPDYCNANGLEMWDESLTDQDLEEMELTDRWVDWY 80
Cdd:pfam17420   1 LKLRVWHIPQVPGKAFHVEVPSVEEGVRLKDALADYDLFQYNNNIKPDYCNASGLQMYDEDLTDDDLEDMGLDDRWVDWY 80
                          90
                  ....*....|....*...
gi 2258056879  81 SECQCYDDPREYIESLKE 98
Cdd:pfam17420  81 DEDNFFDEPNEYLEHLKS 98
 
Name Accession Description Interval E-value
PHA01516 PHA01516
hypothetical protein
1-98 4.38e-70

hypothetical protein


Pssm-ID: 107038  Cd Length: 98  Bit Score: 204.04  E-value: 4.38e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258056879   1 MKLRVWHIPQVPMKPFIVEVASVEEGVRVMDALADYDAFQYDNNIKPDYCNANGLEMWDESLTDQDLEEMELTDRWVDWY 80
Cdd:PHA01516    1 MKLRVWHIPQVPMKPFIVEVASVEEGVRVMDALADYDAFQYDNNIKPDYCNANGLQMWDESLTDQDLEEMELTDRWVDWY 80
                          90
                  ....*....|....*...
gi 2258056879  81 SECQCYDDPREYIESLKE 98
Cdd:PHA01516   81 SECQCYDDPREYLESLKE 98
GP17 pfam17420
Superinfection exclusion gene product 17; Bacteriophages infect host cells by injecting their ...
1-98 9.40e-60

Superinfection exclusion gene product 17; Bacteriophages infect host cells by injecting their genome through the cell wall. To this end, tailed bacteriophages have evolved complex tail machines that extend from a unique capsid vertex, providing both an attachment point to the host surface, and a channel for genome-ejection through the cell envelope. Family members of this domain are putative gp17 proteins involved in genome delivery tail machine in Entereobacteria phage p22 and Salmonella phage ViI. Gp17 found in other bacteriophages such as SPP1 (siphophage SPP1, a lytic Bacillus subtilis phage) has been identified as a tail completion protein adopting an alpha/beta fold, and found to be located at the interface between the head-to-tail connector and the tail of bacteriophage SPP1.


Pssm-ID: 340135  Cd Length: 98  Bit Score: 177.79  E-value: 9.40e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2258056879   1 MKLRVWHIPQVPMKPFIVEVASVEEGVRVMDALADYDAFQYDNNIKPDYCNANGLEMWDESLTDQDLEEMELTDRWVDWY 80
Cdd:pfam17420   1 LKLRVWHIPQVPGKAFHVEVPSVEEGVRLKDALADYDLFQYNNNIKPDYCNASGLQMYDEDLTDDDLEDMGLDDRWVDWY 80
                          90
                  ....*....|....*...
gi 2258056879  81 SECQCYDDPREYIESLKE 98
Cdd:pfam17420  81 DEDNFFDEPNEYLEHLKS 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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