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Conserved domains on  [gi|2287618250|gb|UVC42465|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Synallaxis cherriei]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-316 1.14e-159

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 449.66  E-value: 1.14e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   1 AKLISTMSLFLGTTITISSNHWAMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  81 DITQLTHPISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHTLLITMAISSAAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 161 GGWMGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLYCLMTAAIFLTLKTTKTLKLSSMMTAWTKIPSLSATL 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287618250 241 MLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAYCATITLPPNSINYMKQWQTNKP 316
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-316 1.14e-159

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 449.66  E-value: 1.14e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   1 AKLISTMSLFLGTTITISSNHWAMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  81 DITQLTHPISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHTLLITMAISSAAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 161 GGWMGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLYCLMTAAIFLTLKTTKTLKLSSMMTAWTKIPSLSATL 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287618250 241 MLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAYCATITLPPNSINYMKQWQTNKP 316
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 11-294 1.30e-34

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 131.39  E-value: 1.30e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  11 LGTTITISSNHWAMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDITQLTHPI 89
Cdd:COG1007   113 LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAAL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  90 S------------CLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMK----FPPITLILLTSPSLNH---TLL 150
Cdd:COG1007   193 AagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqLLL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 151 ITMAISSAALGGWMGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLTL--ITFYL--YCLMTAAIFLTLKTTKTLKLSSM 226
Cdd:COG1007   273 AVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSRKGGEAE 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2287618250 227 MTA-----WTKIPSLSATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAY 294
Cdd:COG1007   353 EIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-264 3.90e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 113.18  E-value: 3.90e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  19 SNHWAMAWTGLEINTLAILPLI-SKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDITQL-----------T 86
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  87 HPISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLA----TAMKFPPITLILLTSPSLN--HTLLITMAISSAAL 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAatlvKAGGYGLIRRSLLYLPSSPfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 161 GGWMGLNQTQTRKVLAFSSISHLGWMTIII----IYNPKLTLITFYLYCLMTAAIFLTLKTTKTLKLSS-----MMTAWT 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2287618250 232 KIPSLSATLMLALLSLAGLPPLTGFLPKWLIIQ 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-293 1.62e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 103.49  E-value: 1.62e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  10 FLGTTITISSNHWAMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDITQLTHP 88
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  89 ------------ISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMK---FPPITLILLTSPS----LNHTL 149
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 150 LITMAISSAALGGWMGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLTL--ITFYL--YCLMTAAIFLTLKTTKTL---- 221
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRSYkdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2287618250 222 --KLSSMMTAWTKIPSLSATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLA 293
Cdd:TIGR01770 352 ieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-316 1.14e-159

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 449.66  E-value: 1.14e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   1 AKLISTMSLFLGTTITISSNHWAMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  81 DITQLTHPISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHTLLITMAISSAAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 161 GGWMGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLYCLMTAAIFLTLKTTKTLKLSSMMTAWTKIPSLSATL 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287618250 241 MLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAYCATITLPPNSINYMKQWQTNKP 316
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 7-316 3.68e-131

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 377.61  E-value: 3.68e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   7 MSLFLGTTITISSNHWAMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDITQLT 86
Cdd:MTH00135   11 FSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMS 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  87 HPISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSlNHTLLITMAISSAALGGWMGL 166
Cdd:MTH00135   91 HPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGL 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 167 NQTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLYCLMTAAIFLTLKTTKTLKLSSMMTAWTKIPSLSATLMLALLS 246
Cdd:MTH00135  170 NQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLS 249

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 247 LAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAYCATITLPPNSINYMKQWQTNKP 316
Cdd:MTH00135  250 LGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 8-314 1.10e-125

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 363.47  E-value: 1.10e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   8 SLFLGTTITISSNHWAMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDITQLTH 87
Cdd:MTH00070   12 SLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQT 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  88 PISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHTLLITMAISSAALGGWMGLN 167
Cdd:MTH00070   92 PLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 168 QTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLYCLMTAAIFLTLKTTKTLKLSSMMTAWTKIPSLSATLMLALLSL 247
Cdd:MTH00070  172 QTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSL 251

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2287618250 248 AGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAYCATITLPPNSINYMKQWQTN 314
Cdd:MTH00070  252 GGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK 318
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 3-312 2.36e-114

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 334.89  E-value: 2.36e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   3 LISTMSLFLGTTITISSNHWAMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDI 82
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  83 TQLTHPISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHTLLITMAISSAALGG 162
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 163 WMGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLYCLMTAAIFLTLKTTKTLKLSSMMTAWTKIPSLSATLML 242
Cdd:MTH00105  167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 243 ALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAYCATITLPPNSINYMKQWQ 312
Cdd:MTH00105  247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQ 316
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 7-313 1.20e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 276.85  E-value: 1.20e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   7 MSLFLGTTITISSNHWAMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDITQLT 86
Cdd:MTH00200   11 LSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEML 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  87 HPISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHTLLITMAISSAALGGWMGL 166
Cdd:MTH00200   91 GPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 167 NQTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLYCLMTAAIFLTLKTTKTLKLSSMMTAWTKIPSLSATLMLALLS 246
Cdd:MTH00200  171 NQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLS 250

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2287618250 247 LAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAYCATITLPPNSINYMKQWQT 313
Cdd:MTH00200  251 LGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRT 317
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 8-317 1.19e-82

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 254.08  E-value: 1.19e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   8 SLFLGTTITISSNHWAMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDITQLTH 87
Cdd:MTH00041   12 SIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLN 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  88 PISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHTLLITMAISSAALGGWMGLN 167
Cdd:MTH00041   92 TLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 168 QTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLYCLMTAAIFLTLKTTKTLKLSSMMTAWTKIPSLSATLMLALLSL 247
Cdd:MTH00041  172 QTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSL 251

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 248 AGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAYCATITLPPNSINYMKQWQTNKPV 317
Cdd:MTH00041  252 GGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNI 321
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 2-315 6.07e-62

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 200.43  E-value: 6.07e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   2 KLISTMSLFLGTTITISSNHWAMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGqwd 81
Cdd:MTH00160    7 KLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM--- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  82 itqLTHPISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTspsLNHTLLITMAISSAALG 161
Cdd:MTH00160   84 ---LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 162 GWMGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLYCLMTAAIFLTLKTTKTLKLSSMMTAWTKIPSLSATLM 241
Cdd:MTH00160  158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2287618250 242 LALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAYCAtITLPPNSINYMKQWQTNK 315
Cdd:MTH00160  238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNK 310
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-298 8.57e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 171.22  E-value: 8.57e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   1 AKLISTMSLFLGTTITISSNHWAMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQW 80
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  81 DITqlthpiscLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNH-TLLITMAISSAA 159
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 160 LGGWMGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLYCLMTAAIFLTLKTTKTLKLsSMMTAWTKIPSLSAT 239
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYKTGLS 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2287618250 240 LMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAYCATI 298
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 8-306 1.42e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 165.72  E-value: 1.42e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   8 SLFLGTTITISSNHWAMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFSSTTnalftgQWDITQLTH 87
Cdd:MTH00011   14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLK 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  88 PISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHTLLITMAISSAALGGWMGLN 167
Cdd:MTH00011   88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 168 QTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLYCLMTAAIFLTLKTTKTLKLSSMMTAWTKIPSLSATLMLALLSL 247
Cdd:MTH00011  168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2287618250 248 AGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAYcATITLPPNSIN 306
Cdd:MTH00011  248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-294 6.08e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 147.90  E-value: 6.08e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   8 SLFLGTTITISSNHWAMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALftgqwdiTQLTH 87
Cdd:MTH00197    6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFS-------NLYLS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  88 PISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPitLILLTSPSLNHTLLITMAISSAALGGWMGLN 167
Cdd:MTH00197   79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 168 QTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLYCLMTAAIFLTLKTTKTLKLSSMMTAWTKIPSLSATLMLALLSL 247
Cdd:MTH00197  157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2287618250 248 AGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAY 294
Cdd:MTH00197  237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 11-294 1.30e-34

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 131.39  E-value: 1.30e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  11 LGTTITISSNHWAMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDITQLTHPI 89
Cdd:COG1007   113 LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAAL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  90 S------------CLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMK----FPPITLILLTSPSLNH---TLL 150
Cdd:COG1007   193 AagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqLLL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 151 ITMAISSAALGGWMGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLTL--ITFYL--YCLMTAAIFLTLKTTKTLKLSSM 226
Cdd:COG1007   273 AVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSRKGGEAE 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2287618250 227 MTA-----WTKIPSLSATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAY 294
Cdd:COG1007   353 EIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
11-292 4.49e-30

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 119.16  E-value: 4.49e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  11 LGTTITISSNHWAMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDITQLTHPI 89
Cdd:PRK05777  114 LGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKAL 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  90 S------------CLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMK---FPPITLILLTSPSLNHT----LL 150
Cdd:PRK05777  194 AdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLRLLVVAFGGLSEdwqqVL 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 151 ITMAISSAALGGWMGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLTL--ITFYL--YCLMTAAIFLTLKTTKTLKL-SS 225
Cdd:PRK05777  274 AIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRRKGGeAE 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2287618250 226 MMTAWTKI----PSLSATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRL 292
Cdd:PRK05777  354 SISDFAGLskrsPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-264 3.90e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 113.18  E-value: 3.90e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  19 SNHWAMAWTGLEINTLAILPLI-SKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDITQL-----------T 86
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  87 HPISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLA----TAMKFPPITLILLTSPSLN--HTLLITMAISSAAL 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAatlvKAGGYGLIRRSLLYLPSSPfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 161 GGWMGLNQTQTRKVLAFSSISHLGWMTIII----IYNPKLTLITFYLYCLMTAAIFLTLKTTKTLKLSS-----MMTAWT 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2287618250 232 KIPSLSATLMLALLSLAGLPPLTGFLPKWLIIQ 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 11-292 9.85e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 110.89  E-value: 9.85e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  11 LGTTITISSNHWAMAWTGLEINTLAILPLI-SKPHHPRAIEAATKYFLTQAAASTLLLFS-------------STTNALF 76
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  77 TGQWDITQLTHPISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPpiTLILLTSPSLNHTLLITMAIS 156
Cdd:MTH00196   84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLG--IFSILVSIGLNVNILLIGGLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 157 SAALGGWMGLNQTQTRKVLAFSSISHLGWMTIII----IYNPKLTLITFYLYCLMTaaIFLTLKTTKTLKLSSMMTAWT- 231
Cdd:MTH00196  162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMS--ICVFSIILALNVYKNLIIEFSg 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2287618250 232 ---KIPSLSATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRL 292
Cdd:MTH00196  240 lsrRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-293 1.62e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 103.49  E-value: 1.62e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  10 FLGTTITISSNHWAMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDITQLTHP 88
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  89 ------------ISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMK---FPPITLILLTSPS----LNHTL 149
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 150 LITMAISSAALGGWMGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLTL--ITFYL--YCLMTAAIFLTLKTTKTL---- 221
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRSYkdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2287618250 222 --KLSSMMTAWTKIPSLSATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLA 293
Cdd:TIGR01770 352 ieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 11-263 3.85e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 99.32  E-value: 3.85e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  11 LGTTITISSNHWAMAWTGLEINTLAILPLIS-KPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDI----TQL 85
Cdd:MTH00199  108 LGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSIL 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  86 THPISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNhtLLITMAISSAALGGWMG 165
Cdd:MTH00199  188 TGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAIGA 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 166 LNQTQTRKVLAFSSISHLGW----MTIIIIYNPKLTLITFYLYCLMTAAIFLTLKTTktlklssmmtAWTKI-------- 233
Cdd:MTH00199  266 LNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSL----------KLTKGlivevsgl 335

                         250       260       270
                  ....*....|....*....|....*....|....
gi 2287618250 234 ----PSLSATLMLALLSLAGLPPLTGFLPKWLII 263
Cdd:MTH00199  336 srknPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 26-292 6.54e-20

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 89.82  E-value: 6.54e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  26 WTGLEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDITQLTHPIS----------CLLMT 95
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAeldpglllaaFALLL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  96 TAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPI-------TLILLTSPSLN-HTLLITMAISSAALGGWMGLN 167
Cdd:COG0651   213 VGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVyailrvlTLLFGADPALFlGTLLLVLGLLTMLVGALGALA 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 168 QTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLYC----LMTAAIFLTLKTTKTLKLSSMMTA----WTKIPSLSAT 239
Cdd:COG0651   293 QRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAAGAIERATGTRDLDKlgglGKRMPLTAAA 372

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2287618250 240 LMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRL 292
Cdd:COG0651   373 FLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 11-292 2.21e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 82.98  E-value: 2.21e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  11 LGTTITISSNHWAMAWTGLEINTLAILPLISKPHHPRAI---------EAATKYFLTQAAASTLLLFSSTTNALFTGQ-- 79
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  80 ------------WDITQLTHPISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFppITLILLTSPSLNH 147
Cdd:MTH00198  279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 148 TLLITMAISSAALGGWMGLNQTQTRKVLAFSSISHLGWM----------------TIIIIYNPKlTLITFYLYCLMTAAI 211
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIligvsagtyeslqaswTYAVTYLVS-ALASFTVICTLEEFG 435

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 212 FLTLKTTKTLKLSSMMTAWTKI----------PSLSATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALL 281
Cdd:MTH00198  436 TRTPTSRQRDGSFGNYNLVRRLvdltilsrgqPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLV 515

                         330
                  ....*....|....*...
gi 2287618250 282 SLLGL-------FFYLRL 292
Cdd:MTH00198  516 ALFAIictcisaFYYIRI 533
ndhB CHL00049
NADH dehydrogenase subunit 2
 47-259 6.10e-16

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 78.12  E-value: 6.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  47 RAIEAATKYFLTQAAASTLLLFS-STTNALFTGQWDI---------TQLTHPISCLL----MTTAISIKLGLVPFHFWFP 112
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 113 EVLQGS-----------SLTTGLLLATAMkfppITLILLTSPSLNHTLLITMAISSAALGGWMGLNQTQTRKVLAFSSIS 181
Cdd:CHL00049  239 DVYEGSptpvvaflsvtSKVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIG 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 182 HLGWMTIIII----YNPKLTLITFYL-YCLMTAAIFLTLKTTKTLKLSSMMT----AWTKIPSLSATLMLALLSLAGLPP 252
Cdd:CHL00049  315 QIGYVIIGIIvgdsNDGYASMITYMLfYIFMNLGTFACIVLFGLRTGTDNIRdyagLYTKDPFLALSLALCLLSLGGIPP 394


                  ....*..
gi 2287618250 253 LTGFLPK 259
Cdd:CHL00049  395 LAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
46-259 1.50e-13

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 71.24  E-value: 1.50e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  46 PRAIEAATKYFLTQAAASTLLLF-SSTTNALFTGQwdiTQLTH-------------PISCLLMTTAISIKLGLVPFHFWF 111
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAialalitspslglALALVFVIAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 112 PEVLQGS-----------SLTTGLLLAtamkfppITLILLTSPSLN---HTLLITMAISSAALGGWMGLNQTQTRKVLAF 177
Cdd:PRK02504  234 PDVYEGSptpvvaflsvgSKAAGFALA-------IRLLVTAFPSFDeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAY 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 178 SSISHLGWMTIIIIYNPK--LTLITFYL--YCLMTAAIFLTLKTTKTLKLSSMMTAWT----KIPSLSATLMLALLSLAG 249
Cdd:PRK02504  307 SSIGQAGFVMIGLVAGTEagYASMVFYLlaYLFMNLGAFACVILFSLRTGTDQISDYAglyqKDPLLTLGLSLCLLSLGG 386

                         250
                  ....*....|
gi 2287618250 250 LPPLTGFLPK 259
Cdd:PRK02504  387 IPPLAGFFGK 396
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-303 3.74e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 69.91  E-value: 3.74e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  29 LEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDITQL--------THPISCLLMTTAISI 100
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagalaenpTVVTAFGFVLLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 101 KLGLVPFHFWFPEVLQG-SSLTTGLLLATAMKFPPITLILLT---------SPSLNHTLLITMAISSAALGGWMGLNQTQ 170
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYftvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQDD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 171 TRKVLAFSSISHLGWMTIIIIYNPKLTLI--TFYL--YCLMTAAIFLTLKTTKTLKLSSMMTAWTKI----PSLSATLML 242
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGAIEVTYGTRRLSELSGLgrrmPLTAAAFAV 374

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2287618250 243 ALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAYCATITLPPN 303
Cdd:PRK08375  375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPP 435
PRK12650 PRK12650
DUF4040 family protein;
83-300 4.00e-10

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 60.83  E-value: 4.00e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  83 TQLTHPISCLLMTTAISiKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLN-----HTLLITMAISS 157
Cdd:PRK12650  204 PGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHdvavwNWLLIIVGMIT 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 158 AALGGWMGLNQTQTRKVLAFSSISHLGWM-TIIIIYNP-KLT--LITFYLYCLMTAAIFLTLKTTKTLKLSSMMT----A 229
Cdd:PRK12650  283 ALMGAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRrlgsL 362

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2287618250 230 WTKIPSLSATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMtPTATTIALLSLLGLFFYLRLAYCATITL 300
Cdd:PRK12650  363 WRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPG-GNAGVVLLLVGAALGAVFTFAYSARLVL 432
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 45-288 6.73e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 59.71  E-value: 6.73e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  45 HPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQW--DITQLT-HPIS-------CLLMTTAISIKLGLVPFHFWFPEV 114
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAaAPLPltaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 115 LQGSSLTTGLLLATAMK--------------FPPITLILLTspslnhtLLITMAISSAALGGWMGLNQTQTRKVLAFSSI 180
Cdd:COG1008   236 HVEAPTAGSVLLAGVLLkmggygllrfalplFPEASAYFAP-------LLAALGVIGIIYGALVALAQTDLKRLIAYSSV 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 181 SHLGWMTI-IIIYNPK-LTLITFYL--YCLMTAAIFLTLKTTKTLKLSSMMTA----WTKIPSLSATLMLALLSLAGLPP 252
Cdd:COG1008   309 SHMGFVLLgIFALNPLgLQGAVLQMvsHGLITAALFLLVGVLYDRTHTRDIADlgglAKRMPVLAALFLLAALASLGLPG 388

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2287618250 253 LTGFLPKWLIIQELTKqemtpTATTIALLSLLGLFF 288
Cdd:COG1008   389 TSGFVGEFLVLLGAFQ-----VNPWLAILAALGLIL 419
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 92-259 1.24e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 59.55  E-value: 1.24e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  92 LLMTTAISiKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHT-----LLITMAISSAALGGWMGL 166
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFADVpvwrpTVLVLGLATMLLGGWRAL 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 167 NQTQTRKVLAFSSISHLGWMTIII-IYNPKLTLITFYLYC---LMTAAIFltlkttktlklssMMTA------------- 229
Cdd:PRK12644  287 RQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALAGLAMLLahaLFKAALF-------------LVVGiidhstgtrdirk 353

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2287618250 230 ----WTKIPSLSATLMLALLSLAGLPPLTGFLPK 259
Cdd:PRK12644  354 lsglGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-262 2.32e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.18  E-value: 2.32e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  29 LEINTLAILPLIS-KPHHPRAIEAATKYFLTQAAASTLLLFSSttnALFTGQWDI-------------TQLTHPISCLLM 94
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylavkmsenPTVVAKIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  95 TTAISIKLGLVPFHFWFPEVLQG--SSLTTGLLLATAMKFPPITLILLT--SPSLNHT----LLITMAISSAALGGWMGL 166
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 167 NQTQTRKVLAFSSISHLGWM------TIIIIYNPKLTLITF----------YLYCLMTAAIFLTLKTTKTLKLSSMMTAW 230
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMASYGEialaggiyhiVNHALYKALLFLTAGAVIYETGTRNLNEL 386

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2287618250 231 T----KIPSLSATLMLALLSLAGLPPLTGFLPKWLI 262
Cdd:PRK08376  387 GglarTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-288 2.90e-09

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 58.02  E-value: 2.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   8 SLFLGTT-ITISSNHWAMAWTGLEINTLAILPLISKPHHPRAIEAATKYFL------TQAAASTLLLFSSTTNALFTGQ- 79
Cdd:PRK06458  115 QLFLFTMlLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDGEm 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  80 ---W-DITQLTHPISCLLMTTAISI-------KLGLVPFHFWFPEVLQG-----SSLTTGLLLATAMkFPPITLILLTSP 143
Cdd:PRK06458  195 ailWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEapspvSALLSGVLLNVAL-YAVLRYYILIDA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 144 SLNH----TLLITMAISSAALGGWMGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLYCLM----TAAIFLTL 215
Cdd:PRK06458  274 AIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNhsltKSAIFFAS 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2287618250 216 KTTKTLKLSSMMTA----WTKIPSLSATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEmtPTATTIALLSLLGLFF 288
Cdd:PRK06458  354 GNVLQKYGTRDINVirglLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARG--PLLIAILLLLLLTLAF 428
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 46-288 3.29e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 57.64  E-value: 3.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  46 PRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQ-WDITQL-THPISCLLMT-------TAISIKLGLVPFHFWFPEV-L 115
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFGVQTwlflaffIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 116 QGSSLTTGLLLATAMKFPPITLILLTSPSLNH------TLLITMAISSAALGGWMGLNQTQTRKVLAFSSISHLGWMTII 189
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDaslyfaPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 190 IIYNPKLTLI--TFYLYC--LMTAAIFLTLKTTKTLKLSSMMT----AWTKIPSLSATLMLALLSLAGLPPLTGFLPKWL 261
Cdd:TIGR01972 312 IFSFNELGISgaVFQMIShgLITAALFLLVGVLYERAHTRDIAkyggLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391

                         250       260
                  ....*....|....*....|....*..
gi 2287618250 262 IIQELTKqemtpTATTIALLSLLGLFF 288
Cdd:TIGR01972 392 ILLGSFK-----VNPVVAFLAALGIVL 413
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 101-294 5.46e-09

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 57.08  E-value: 5.46e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 101 KLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHT-----LLITMAISSAALGGWMGLNQTQTRKVL 175
Cdd:COG1009   224 KSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPLFALSpvwltVVAIIGAITALFAALIALAQTDIKRVL 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 176 AFSSISHLGWMTIIIiynpKLTLITFYLYCLMTAAIFLTLKttktlklssMMTA------------------WTKIPSLS 237
Cdd:COG1009   304 AYSTVSQLGYMFLAL----GVGAYVAALFHLLTHAFFKALL---------FLGAgsvihatgtrdirkmgglRKKMPITA 370

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2287618250 238 ATLMLALLSLAGLPPLTGFLPKWLIIQE-LTKQEMTPTATTIALL-SLLGLFFYLRLAY 294
Cdd:COG1009   371 ITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVALLgAFLTAFYSFRLFF 429
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 9-284 8.99e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 53.22  E-value: 8.99e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   9 LFLGTTITISSNHWAMAWTGLEINTLAILPLISKPHHPRAIEAATKYFLTQAAA------STLLLFSSTTNALFTGQWDI 82
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  83 TQLTHP----------ISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHT---- 148
Cdd:PRK08676  191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 149 ----LLITMAISSAALGGWMGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLTL--ITFYL--YCLMTAAIFLTLKTTKT 220
Cdd:PRK08676  271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALfwMLFHMlaHSLVKSGLFFSAGILHR 350

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2287618250 221 LKLSSMMTAWTKI----PSLSATLMLALLSLAGLPPLTGFLPKWLIIQELTkqEMTPTATTIALLSLL 284
Cdd:PRK08676  351 QYRSDRFDRIFDVfrlqPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLG--GISVWLVLAVLLLLL 416
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 105-285 1.63e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 52.61  E-value: 1.63e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 105 VPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHT-----LLITMAISSAALGGWMGLNQTQTRKVLAFSS 179
Cdd:PRK12647  212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYST 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 180 ISHLGWMTIIIIYNPKLTLITFYLY----CLMTAAIFLTLKTTKTLKLSSMMTA----WTKIPSLSATLMLALLSLAGLP 251
Cdd:PRK12647  292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDHETGTRDITKlgglRRAMPITAAAALLAALSMAGLP 371

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2287618250 252 PLTGFLPKWLIIQELTkqEMTPTATTIALLSLLG 285
Cdd:PRK12647  372 PLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 46-263 3.48e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 51.36  E-value: 3.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  46 PRAIEAATKYFLTQAAASTLLLFS----STTNALFTGQWDITQL-THPISCLLMT-------TAISIKLGLVPFHFWFPE 113
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlNLPLPPGVQYwlflaffIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 114 VLQ-----GSSLTTGLLLATAmKFPPITLILLTSPSLNH---TLLITMAISSAALGGWMGLNQTQTRKVLAFSSISHLGW 185
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMG-AYGLLRFSLPLFPDASHefaPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 186 MTI-IIIYNPK-LTLITFYL--YCLMTAAIFLTLKTTKTLKLSSMMTA----WTKIPSLSATLMLALLSLAGLPPLTGFL 257
Cdd:PRK05846  316 VTLgIFAGNQLgIQGAIFQMisHGLSSAALFLLVGVLYDRLHTRDIADygglAKVMPVLAAFFLFFAMASLGLPGTSGFV 395


                  ....*.
gi 2287618250 258 PKWLII 263
Cdd:PRK05846  396 GEFLIL 401
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 88-264 2.15e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 49.19  E-value: 2.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  88 PISCLLMTTAI--SIKLGLvpfHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHTLLITMAIS-----SAAL 160
Cdd:MTH00032  226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITifgalTAFF 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 161 GGWMGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLY--------CLMTAAIFLTLKTTKTLKLSSMMTAWTK 232
Cdd:MTH00032  303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLVnhaffkalLFLSAGSVIHSTTVDEQDMRKMGGLIHS 382

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2287618250 233 IPSLSATLMLALLSLAGLPPLTGFLPKWLIIQ 264
Cdd:MTH00032  383 IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-267 2.58e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 48.79  E-value: 2.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  29 LEINTLAILPLISKPHHPRAIEAATKY-FLTQAA-----ASTLLLFSSTTNALFTGqwdiTQLTHPISCLLMTTAISIKL 102
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYlFYSNVAmlfylIGAVLVYQANGTFAFSG----LATADPEAFALIALGLLVKG 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 103 GLVPFHFWFPEVLQGSSLTTGLLLATAMK----FPPITLILLTSPSLNhtLLITMAISSAALGGWMGLNQTQTRKVLAFS 178
Cdd:PRK07234  199 GIFVSGLWLPLTHSEAEPPVSALLSGVVVkagvFPLVRCALDVPGLDL--IVRIFGVGTALLGVLFALLEKDLKRMLAFS 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 179 SISHLGWmtiiIIYNPKLTLITFYLYCLMTAAIFLTL----KTTKTLKLSSMMTAWTKIPslsatLMLALLSLAGLPPLT 254
Cdd:PRK07234  277 TISQLGF----ILAAPLVGGLYALAHGLVKSTLFLCAgalpSRNFTELISQMLGIGKWIP-----LTMASFSIAGFPLLA 347

                         250
                  ....*....|...
gi 2287618250 255 GFLPKWLIIQELT 267
Cdd:PRK07234  348 GFVSKVLTLKNLL 360
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 66-294 3.30e-06

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 48.53  E-value: 3.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  66 LLFSSTTNALFTGqwDITQLTHPisCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSL 145
Cdd:MTH00020  192 LDFSSVFNMVVSA--PSSDITLI--CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLF 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 146 NHTLLITMAIS-----SAALGGWMGLNQTQTRKVLAFSSISHLGWMTIIIiynpKLTLITFYLYCLMTAAIFLTLKTTKT 220
Cdd:MTH00020  268 EQAPLALIIVTivgslTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVAC----GLSHYSISLFHLMNHAFFKALLFLSA 343

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 221 LKL---------SSMMTAWTKIPSLSATLML-ALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLS-LLGLFFY 289
Cdd:MTH00020  344 GSVihalsdeqdMRKMGGLISFLPLTYIFFLiGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFYS 423


                  ....*
gi 2287618250 290 LRLAY 294
Cdd:MTH00020  424 IRLIY 428
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 30-290 8.59e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 47.30  E-value: 8.59e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  30 EINTLAILPLISKPHHpRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDIT-------QLTHPISCLLMTTAISI-- 100
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIVFLFLLAfg 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 101 --KLGLVPFHFWFPE-----------VLQGSSLTTGLLLATAMKFPPITLILLTS-------PSLNHTLLITMAISsAAL 160
Cdd:PRK08668  207 vaKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGAYGFLLVLYVLPGTKLFSEfgtyrgvPLFNYILAWLGNIS-IIV 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 161 GGWMGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLT----LITFYLYCLMTAAIFLTLKTTKTLKLSSMMT-----AWt 231
Cdd:PRK08668  286 GTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLIFAAVIYRTGTTKISemgglIE- 364

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2287618250 232 KIPSLSATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTAtTIALLSLLGLFFYL 290
Cdd:PRK08668  365 KMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITA-FMAFFGSIGSFLYV 422
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 99-292 2.58e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 45.71  E-value: 2.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  99 SIKLGLVPFHFWFPE----------VLQGSSLTTGLLLATAMKFppiTLILLTSPSLNHTLLITMAISSAALGGWMGLNQ 168
Cdd:PRK07691  220 ATKAGLFPLYFWLPGsyyappiaiaALFGALLTKVGVYAIARTF---TLFFSHDTSFTHYLILILALLTIIFGVIGAVAY 296

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 169 TQTRKVLAFSSISHLGWMTI-IIIYNPK-LTLITFYL--YCLMTAAIFLTLKTTKTLKLSS----MMTAWTKIPSLSATL 240
Cdd:PRK07691  297 FDIKKIIIYNIMIAVGVILVgVAMMTESgMIGAIYYLihDMIVKAALFLLIGIMIKITGTTdlkkMGGLIKRYPVLGWMF 376

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2287618250 241 MLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRL 292
Cdd:PRK07691  377 FIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-263 3.75e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.11  E-value: 3.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  29 LEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFS-----STTNALFTGqwDITQLTHP--------ISCLLMT 95
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  96 TAISIKLGLVPFHFWFPEVLQGS-SLTTGLLLATAMKFPPITLI-----------LLTSPSLNhTLLITMAISSAALGGW 163
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIIrivydvfkanfVFTTLPFN-NVFMILAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 164 MGLNQTQTRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLY----CLMTAAIFLTLKTTK----TLKLSSMMTAWTKIPS 235
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                         250       260
                  ....*....|....*....|....*...
gi 2287618250 236 LSATLMLALLSLAGLPPLTGFLPKWLII 263
Cdd:PRK12662  376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-287 4.46e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 45.11  E-value: 4.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  55 YFLTQAAASTLLLFSSTTNALF-TGQWDITQLTHP-----ISCLLMTTAISIKLGLVPFHFWFPEVLQG-----SSLTTG 123
Cdd:PRK08667  166 FYFVMTQLSTVFLMLGIIVLFIqTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPAspsnvSALMSG 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 124 LLLATAMKFPPITLILLTSPSLNHTLLI-TMAISSAALGGWMGLNQTQTRKVLAFSSISHLGwmtiIIIYNPKLTLItFY 202
Cdd:PRK08667  246 VMLKVAVYGLVRFLMDVLSPELWWGVLIlLAGSISALLGVIYALKEHDLKGLLAYSSIENIG----IILMGIGLYVI-FG 320

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 203 LYCLMTAAIFLTLKTTKTLKLSSM------MTAWT------------------KIPSLSATLMLALLSLAGLPPLTGFLP 258
Cdd:PRK08667  321 VYGLDTLALLALGGALFHSLNHALfksllfLTAGSvvhatgtrniekmgglvkLMPYTSALFLVGAVSIAALPPFNGFAS 400

                         250       260       270
                  ....*....|....*....|....*....|
gi 2287618250 259 KWLIIQELTKQ-EMTPTATTIALLSLLGLF 287
Cdd:PRK08667  401 ELLLYESFFQSfSVADPLIKILLFSVLAIF 430
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
30-294 4.70e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 45.02  E-value: 4.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  30 EINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDITQ-----LTHPISCLLMTTAISIKLGL 104
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 105 V------PFHFWFPEVLQGSSLTTGLLLATAMKFPPITLIL--------LTSPSLNHTLLITMAISSAALGGWMGLNQTQ 170
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 171 TRKVLAFSSISHLGWMTIIIIYNPKLTLITFYLYC----LMTAAIFLTLKTTKTLKLSSMMTAW----TKIPSLSATLML 242
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLGAGIVSYRTKTSNLRKLggllPVMPVVAFMVLC 369

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2287618250 243 ALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSLLGLFFYLRLAY 294
Cdd:PRK06277  370 AKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY 421
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
49-264 8.45e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.17  E-value: 8.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  49 IEAATKYFLTQAAASTLLL---------FSSTTNALFTGQWDITQLTHPISCL--LMTTAISIKLGLVPFhFWFPEVLQG 117
Cdd:PRK12663  157 LRGAIKYVVLNLIGSWLFLlgigllygtFGTLNMAHIAMRLNDMGDTATLTTIalLFLLAFGMKAALFPF-MWLPAAYHT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 118 SSLTTGLLLATAMK-------FPPITLILLTSPSLNHTLLITMAISSAALGGWMGLNQTQTRKVLAFSSISHLGWMTI-I 189
Cdd:PRK12663  236 PNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgL 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 190 IIYNPK-LTLITFYLY---CLMTAAIFLTLKTTKTLKLSSMMTA---WTKIPSLSATLMLALLSLAGLPPLTGFLPKWLI 262
Cdd:PRK12663  316 ALGTPAgINGAIFYLVhdmVVKTALFLIAGSLVRLTGYRSLQYLgglYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLL 395


                  ..
gi 2287618250 263 IQ 264
Cdd:PRK12663  396 VQ 397
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 51-190 1.36e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.48  E-value: 1.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  51 AATKYFLTQAAASTLLLFSSTTNALFTGQ--WDITQLTH---PISCLLMT-----TAISIKLGLVPFHFWFPEVLQGSSL 120
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2287618250 121 TTGLLLA-TAMKFPPITLILLTSPSLNHT------LLITMAISSAALGGWMGLNQTQTRKVLAFSSISHLGWMTIII 190
Cdd:PRK12561  218 PVSMILAgVLLKMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 44-259 1.78e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 43.28  E-value: 1.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  44 HHPRAIEAATKYFLTQAAASTLLLFSSTTNALFTGQWDITQLTHPISC--------LLMTTAISIKLGLV------PFHF 109
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 110 WFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHT-----LLITMAISSAALGGWMGLNQTQTRKVLAFSSISHLG 184
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 185 WMTIIIIYNPK------LTLITFYL--YCLMTAAIFLTLKTTKTLKLSSMMTAW----TKIPSLSATLMLALLSLAGLPP 252
Cdd:PRK12649  316 YLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGIVAHEAATRDIRKLgglrKEMPITFIVASIAALAMAGIPP 395


                  ....*..
gi 2287618250 253 LTGFLPK 259
Cdd:PRK12649  396 LNGFLSK 402
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 7-263 6.45e-04

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 41.11  E-value: 6.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   7 MSLFLGTT--ITISSNHWAMAWTgLEINTLAILPLISKPHHPRAIEAATKYFLTQAAAS------TLLLFSSTTNALFTG 78
Cdd:PRK06525  119 LLLFIGAMagLVYSSTLLGLLLF-FEITGLCSWALISYYQSPKALRSALKALLITHIGSlglylaAATLFLQTGTFALSA 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  79 QWDITQLTHPISCLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITL---ILLTSPSLNHT---LLIT 152
Cdd:PRK06525  198 LSGLHGSLKYLVFLGILFAAWGKSAQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIfarAIQSMGPIPHVigyVGAV 277

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 153 MAISSAALGGWMGLNQTQTRKVLAFSSISHLGWMTIII---IYNPKLTLI--TFY---------LYCLMTAAIFLTLKTT 218
Cdd:PRK06525  278 MAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLslaILGSRLALEgsIAYifnhafaksLFFLVAGALSYSCGTR 357

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2287618250 219 KTLKLSSMMtawTKIPSLSATLMLALLSLAGLPPLTGFLPKWLII 263
Cdd:PRK06525  358 LLPRLRGVL---KKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 7-280 1.11e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 40.57  E-value: 1.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   7 MSLFLGTTITISSNHWAMaWTGLEINTLAILPLISKPHHPRAIEAATKYFLTQAAASTLL-------LFSSTTNALFTGQ 79
Cdd:PRK06589  124 LTILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLflpavilIYTKTGNLDFVSG 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  80 WDITQLTHPISCLLMTTAIsIKLGLVPFHFWFPEVLQGSSLTTGLLLATAM----KFPPITLILLTSPSLNHT------- 148
Cdd:PRK06589  203 GLFSKNQSIILLLMFIYGI-AKTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLSYLQrifaefn 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 149 LLITMAISSAALGGWMGLNQTQTRKVLAFSSISHLGW--MTIIIIYNPKLTLITFYLYC--LMTAAIFLTLKTTKTLKLS 224
Cdd:PRK06589  282 WLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLVShsFAKICLFYSMGSIYSLKKE 361

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 225 SMMTAWTKI----PSLSATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIAL 280
Cdd:PRK06589  362 DQVDKLHGTsksfPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVML 421
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 89-299 1.19e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 40.76  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  89 ISCLLMTTAI--SIKLGLvpfHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHTLLITMAIS-----SAALG 161
Cdd:MTH00210  213 ICLLLFIGAVgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGPLFEGSPLALTIVTilgalTAFFA 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 162 GWMGLNQTQTRKVLAFSSISHLGWMTIIIiynpKLTLITFYLYCLMTAAIFLTLKTTKTLKL-------SSMMTAWTKIP 234
Cdd:MTH00210  290 ATVGVVQNDLKKVIAYSTCSQLGYMVMVC----GISNYSTSLFHLMNHAFFKALLFLSAGSVihavsdeQDMRKMGGLIK 365

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2287618250 235 SLSATLMLAL---LSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLS-LLGLFFYLRLAYCATIT 299
Cdd:MTH00210  366 SIPFTYVMILigsLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSaLLTAFYSIRLIYLTFIT 434
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 287-316 1.93e-03

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 35.70  E-value: 1.93e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 2287618250 287 FFYLRLAYCATITLPPNSINYMKQWQTNKP 316
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNST 30
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 78-264 2.34e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 39.75  E-value: 2.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  78 GQWDITQLTHPISCLLMTTAISI----KLGLVPFHFWFPEVLQG----SSLTTGLLLATAMKFPPITLI-LLTSPSLNHT 148
Cdd:MTH00207  165 GHWSITNMWQTDMNNYIALSIMIaamtKSAQMPFSSWLPAAMAAptpvSALVHSSTLVTAGVFLLIRFYpFLSSTYWFNP 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 149 LLITMAISSAALGGWMGLNQTQTRKVLAFSSISHLG-WMTIIIIYNPKLTLITFYLYCLMTAAIFLTLKTTKTLKLSS-- 225
Cdd:MTH00207  245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGvMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHHHSqd 324

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 2287618250 226 ---MMTAWTKIPSLSATLMLALLSLAGLPPLTGFLPKWLIIQ 264
Cdd:MTH00207  325 lrtMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 3-266 2.75e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 39.39  E-value: 2.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250   3 LISTMSL-FLGTTITISSNHWAM---AWTGLEINTLAILPLISKPHHPRAIeaatkyFLTQAAASTLLLFSSTTNALF-T 77
Cdd:PRK06459   74 LSSLYILtILGMAIVLTSDNYLLflaGWEIMTIPSYVAIALTKKNKRPAFV------FMAFGELSTVLILAGFAWAFIiS 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  78 GQWDITQLTHPISCLLMTTAISIKLGLVPFHF--WFPEVLQGSSLTTGLLLATAMKFPPITLIL----LTSPS----LNH 147
Cdd:PRK06459  148 GTTNFSYLPSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILkmtiLTQTIpigyFGL 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 148 TLLITMAISsAALGGWMGLNQTQTRKVLAFSSISHLGWM-----TIIIIYNPKLTLITFYLYCLMTAAIFLTLKTTKTLK 222
Cdd:PRK06459  228 TILAIGAFS-ILFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILYSFAHSVAKTGLFL 306

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2287618250 223 LS------SMMTAWTKIPSLSAT-LMLALLSLAGLPPLTGFLPKWLIIQEL 266
Cdd:PRK06459  307 SSglqekqSITYSKKIRNRWIELgLTLLASSLSGLLPNIGGVASWLLLESL 357
PRK12646 PRK12646
DUF4040 family protein;
106-268 6.28e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 38.20  E-value: 6.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 106 PFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILLTSPSLNHT-----LLITMAISSAALGGWMGLNQTQTRKVLAFSSI 180
Cdd:PRK12646  228 PFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFGSITALKQWDLKGILAYSTI 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 181 SHLGW-MTII-----IIYNPKLTLITFY-------LYCLMTAAIFLTLKTTKTLKLS--------SMMTAWTKI-PSLSA 238
Cdd:PRK12646  308 SQLGMiMAMVgigggYAQHQQDAIASIYvfvlfaaLFHLMNHAIFKCALFMGVGIIDheagtrdiRILSGMRQLfPKMNL 387

                         170       180       190
                  ....*....|....*....|....*....|
gi 2287618250 239 TLMLALLSLAGLPPLTGFLPKWLIIQELTK 268
Cdd:PRK12646  388 VMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 66-294 9.01e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 37.70  E-value: 9.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250  66 LLFSSTTNALFTGQWDITQLTHPIS-----CLLMTTAISIKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKFPPITLILL 140
Cdd:MTH00209  148 LLILSIAWMLMHGNWNIFYLNFNSNlgsviSVLIVLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIR 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 141 TSPSLNHTLLITMAI-----SSAALGGWMGLNQTQTRKVLAFSSISHLGWMTIIIIYN-PKLTLITFYLYCLMTAAIFLT 214
Cdd:MTH00209  228 FFPSLFSSPFFSMSLlllgsLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNqPELAFFHLITHALFKALLFIC 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287618250 215 LKTTKTLKLSS-----MMTAWTKIPSLSATLMLALLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATTIALLSL-LGLFF 288
Cdd:MTH00209  308 AGNIIHSHGHSqdirmVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTsLTAAY 387


                  ....*.
gi 2287618250 289 YLRLAY 294
Cdd:MTH00209  388 SMRLSY 393
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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