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Conserved domains on  [gi|2320142011|gb|UYL94463|]
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MAG: P0 protein [Panicum distortion mosaic virus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Luteo_PO super family cl04656
Luteovirus P0 protein; This family of proteins may be involved in suppression of PTGS a plant ...
35-220 1.25e-20

Luteovirus P0 protein; This family of proteins may be involved in suppression of PTGS a plant defence mechanism.


The actual alignment was detected with superfamily member pfam04662:

Pssm-ID: 252728  Cd Length: 208  Bit Score: 86.29  E-value: 1.25e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2320142011  35 LFNLSLLIYGYGINELRTFLISSFHLIPLLLSGRAR-SDGGSRLIfkRSEAALILRWGLAVGYTPrldiHKRTAILYLRE 113
Cdd:pfam04662  26 SQLLHLLDYGYNHEEIDLFCRSLLYVLPLLLTGDSRyTPGGLQLP--RSYHEDLARFGLACGYPP----ASTTGRIDLRL 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2320142011 114 MSG--TYRSQLLRFETHRLSKGLLSNQYVLTRGLGYFRACVELNLRKVEASIPSPSGDIPVADRLLMGLHIVGGVVRYME 191
Cdd:pfam04662 100 PSTkdVYRLFLQRNSSSSLGERLQRHPECLAYGMEEFKRFLSVWLRDIERSLPESPWRSPVGPYTHLDLCNLGTLLRDLV 179
                         170       180
                  ....*....|....*....|....*....
gi 2320142011 192 CVSTTLFAGSRTNCSRYYNSFNLESVQVD 220
Cdd:pfam04662 180 LPEQLLHRGLYSRLARYYNRLYGEDRGVD 208
 
Name Accession Description Interval E-value
Luteo_PO pfam04662
Luteovirus P0 protein; This family of proteins may be involved in suppression of PTGS a plant ...
35-220 1.25e-20

Luteovirus P0 protein; This family of proteins may be involved in suppression of PTGS a plant defence mechanism.


Pssm-ID: 252728  Cd Length: 208  Bit Score: 86.29  E-value: 1.25e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2320142011  35 LFNLSLLIYGYGINELRTFLISSFHLIPLLLSGRAR-SDGGSRLIfkRSEAALILRWGLAVGYTPrldiHKRTAILYLRE 113
Cdd:pfam04662  26 SQLLHLLDYGYNHEEIDLFCRSLLYVLPLLLTGDSRyTPGGLQLP--RSYHEDLARFGLACGYPP----ASTTGRIDLRL 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2320142011 114 MSG--TYRSQLLRFETHRLSKGLLSNQYVLTRGLGYFRACVELNLRKVEASIPSPSGDIPVADRLLMGLHIVGGVVRYME 191
Cdd:pfam04662 100 PSTkdVYRLFLQRNSSSSLGERLQRHPECLAYGMEEFKRFLSVWLRDIERSLPESPWRSPVGPYTHLDLCNLGTLLRDLV 179
                         170       180
                  ....*....|....*....|....*....
gi 2320142011 192 CVSTTLFAGSRTNCSRYYNSFNLESVQVD 220
Cdd:pfam04662 180 LPEQLLHRGLYSRLARYYNRLYGEDRGVD 208
 
Name Accession Description Interval E-value
Luteo_PO pfam04662
Luteovirus P0 protein; This family of proteins may be involved in suppression of PTGS a plant ...
35-220 1.25e-20

Luteovirus P0 protein; This family of proteins may be involved in suppression of PTGS a plant defence mechanism.


Pssm-ID: 252728  Cd Length: 208  Bit Score: 86.29  E-value: 1.25e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2320142011  35 LFNLSLLIYGYGINELRTFLISSFHLIPLLLSGRAR-SDGGSRLIfkRSEAALILRWGLAVGYTPrldiHKRTAILYLRE 113
Cdd:pfam04662  26 SQLLHLLDYGYNHEEIDLFCRSLLYVLPLLLTGDSRyTPGGLQLP--RSYHEDLARFGLACGYPP----ASTTGRIDLRL 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2320142011 114 MSG--TYRSQLLRFETHRLSKGLLSNQYVLTRGLGYFRACVELNLRKVEASIPSPSGDIPVADRLLMGLHIVGGVVRYME 191
Cdd:pfam04662 100 PSTkdVYRLFLQRNSSSSLGERLQRHPECLAYGMEEFKRFLSVWLRDIERSLPESPWRSPVGPYTHLDLCNLGTLLRDLV 179
                         170       180
                  ....*....|....*....|....*....
gi 2320142011 192 CVSTTLFAGSRTNCSRYYNSFNLESVQVD 220
Cdd:pfam04662 180 LPEQLLHRGLYSRLARYYNRLYGEDRGVD 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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