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Conserved domains on  [gi|2329449731|gb|UZN89660|]
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triple gene block protein 2 [Kalanchoe latent virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Plant_vir_prot super family cl03157
Plant viral movement protein; This family includes several known plant viral movement proteins ...
 4-74 8.85e-13

Plant viral movement protein; This family includes several known plant viral movement proteins from a number of different ssRNA plant virus families including potexviruses, hordeiviruses and carlaviruses.


The actual alignment was detected with superfamily member pfam01307:

Pssm-ID: 279627  Cd Length: 100  Bit Score: 58.98  E-value: 8.85e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2329449731   4 TPPVNYSQVYVAAVIGAAVAITLGLISRSTLPNVGDLQHNLPHGGRYRDGTKVVEYFKP--GKLNSFESRNSF 74
Cdd:pfam01307   1 APPPDYSKVVLAIALGLAFGLLIFTLQRHTLPHVGDNIHNLPHGGQYRDGTKSILYNSPraGSSSSISSRTLF 73
 
Name Accession Description Interval E-value
Plant_vir_prot pfam01307
Plant viral movement protein; This family includes several known plant viral movement proteins ...
 4-74 8.85e-13

Plant viral movement protein; This family includes several known plant viral movement proteins from a number of different ssRNA plant virus families including potexviruses, hordeiviruses and carlaviruses.


Pssm-ID: 279627  Cd Length: 100  Bit Score: 58.98  E-value: 8.85e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2329449731   4 TPPVNYSQVYVAAVIGAAVAITLGLISRSTLPNVGDLQHNLPHGGRYRDGTKVVEYFKP--GKLNSFESRNSF 74
Cdd:pfam01307   1 APPPDYSKVVLAIALGLAFGLLIFTLQRHTLPHVGDNIHNLPHGGQYRDGTKSILYNSPraGSSSSISSRTLF 73
 
Name Accession Description Interval E-value
Plant_vir_prot pfam01307
Plant viral movement protein; This family includes several known plant viral movement proteins ...
 4-74 8.85e-13

Plant viral movement protein; This family includes several known plant viral movement proteins from a number of different ssRNA plant virus families including potexviruses, hordeiviruses and carlaviruses.


Pssm-ID: 279627  Cd Length: 100  Bit Score: 58.98  E-value: 8.85e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2329449731   4 TPPVNYSQVYVAAVIGAAVAITLGLISRSTLPNVGDLQHNLPHGGRYRDGTKVVEYFKP--GKLNSFESRNSF 74
Cdd:pfam01307   1 APPPDYSKVVLAIALGLAFGLLIFTLQRHTLPHVGDNIHNLPHGGQYRDGTKSILYNSPraGSSSSISSRTLF 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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