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Conserved domains on  [gi|2329657401|gb|UZP15379|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Pyrrhura lepida]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.96e-153

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 433.09  E-value: 6.96e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401   1 MTPLAKLISTSSILLGTTITITSNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  81 TGQWDITQLSYPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSQSLNPTLLTLMSTT 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYILMTASIFLTMNTTNTLSLPTLMVSWTKTPML 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQWYAKTS 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 2329657401 321 TNTLIPALTSLSVSLLPLAPMMLTTT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.96e-153

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 433.09  E-value: 6.96e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401   1 MTPLAKLISTSSILLGTTITITSNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  81 TGQWDITQLSYPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSQSLNPTLLTLMSTT 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYILMTASIFLTMNTTNTLSLPTLMVSWTKTPML 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQWYAKTS 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 2329657401 321 TNTLIPALTSLSVSLLPLAPMMLTTT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.70e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 109.44  E-value: 1.70e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  14 LLGTTITITSNHWMTAWIGLEINTLSVIPMIS-KSHHPRAIEATTKYFLVQAAASTLLLF--------SGTIN----AWY 80
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAA 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  81 TGQWDITQLSYPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKL----PPTTILLITSQSLNP---TL 153
Cdd:COG1007   192 LAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLL 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 154 LTLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMAI-IITHNPK-LTLLAFY--IYILMTASIFLTMNTTNTLSLPT 229
Cdd:COG1007   272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFAVILLLSRKGGEA 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2329657401 230 LMVS-----WTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLAY 298
Cdd:COG1007   352 EEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.17e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 101.62  E-value: 1.17e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  23 SNHWMTAWIGLEINTLSVIPMI-SKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLSYPP-------- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  94 ---ACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFT-TALLLSTVMKLPP------TTILLITSQSLNPTLLTLmSTTSIA 163
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglirrSLLYLPSSPFIQQILLIL-AIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 164 LGGWMGLNQTQTRKIMAFSSISHIGWM--AIIITHNPKLTLLAFY--IYILMTASIFL--------TMNTTNTLSLPTLm 231
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMliALGAGTIYGIQAAIFHllTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL- 238

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 2329657401 232 vsWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 --AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-297 5.59e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.47  E-value: 5.59e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  13 ILLGTTITITSNHWMTAWIGLEINTL-SVIPMISKSHHPRAIEATTKYFLVQAAASTLLLF--------SGTIN----AW 79
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLcFYVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygfTGSLNfedlLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  80 YTGQWDITQLSYPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSQSL-------NPT 152
Cdd:TIGR01770 191 FLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQI 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 153 LLTLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIIT----HNPKLTLLAFYIYILMTASIFLTM------NTT 222
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLagtlEGIKAVLFYIFIYALMSLGAFGVLsllrsyKDE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2329657401 223 NTLSLPTLMVSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 351 WIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.96e-153

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 433.09  E-value: 6.96e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401   1 MTPLAKLISTSSILLGTTITITSNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  81 TGQWDITQLSYPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSQSLNPTLLTLMSTT 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYILMTASIFLTMNTTNTLSLPTLMVSWTKTPML 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQWYAKTS 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 2329657401 321 TNTLIPALTSLSVSLLPLAPMMLTTT 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-344 8.88e-127

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 366.94  E-value: 8.88e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401   1 MTPLAKLISTSSILLGTTITITSNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  81 TGQWDITQLSYPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSQSLNPTLLTLMSTT 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYILMTASIFLTMNTTNTLSLPTLMVSWTKTPML 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQWYAKTS 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....
gi 2329657401 321 TNTLIPALTSLSVSLLPLAPMMLT 344
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILN 344
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-344 4.20e-124

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 360.27  E-value: 4.20e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401   1 MTPLAKLISTSSILLGTTITITSNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  81 TGQWDITQLSYPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTtILLITSQSLNPTLLTLMSTT 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYILMTASIFLTMNTTNTLSLPTLMVSWTKTPML 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQWYAKTS 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*
gi 2329657401 321 TNTLIPAL-TSLSVSLLPLAPMMLT 344
Cdd:MTH00135  320 QLTLPLAIsTTATLMLLPLTPAILA 344
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 3.83e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 337.59  E-value: 3.83e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401   1 MTPLAKLISTSSILLGTTITITSNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  81 TGQWDITQLSYPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSQSLNPTLLTLMSTT 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYILMTASIFLTMNTTNTLSLPTLMVSWTKTPML 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQW-YAKT 319
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWqFENT 320

                         330       340
                  ....*....|....*....|....*..
gi 2329657401 320 STNTLIPALTSLSVSLLPLAPMMLTTT 346
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 3.19e-95

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 286.86  E-value: 3.19e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401   1 MTPLAKLISTSSILLGTTITITSNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  81 TGQWDITQLSYPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSQSLNPTLLTLMSTT 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYILMTASIFLTMNTTNTLSLPTLMVSWTKTPML 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQWYAKTS 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 2329657401 321 TNTLIPALTSLSVSLLPLAPMMLTTT 346
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 11-344 1.17e-83

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 257.17  E-value: 1.17e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  11 SSILLGTTITITSNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLS 90
Cdd:MTH00041   11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  91 YPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSQSLNPTLLTLMSTTSIALGGWMGL 170
Cdd:MTH00041   91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 171 NQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYILMTASIFLTMNTTNTLSLPTLMVSWTKTPMLSTTLMLTLLS 250
Cdd:MTH00041  171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 251 LAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQWYAKTSTNTLIPALTS 330
Cdd:MTH00041  251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSI 330

                         330
                  ....*....|....*
gi 2329657401 331 LS-VSLLPLAPMMLT 344
Cdd:MTH00041  331 LSsISILGLLLIPLF 345
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-343 1.61e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 189.65  E-value: 1.61e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401   1 MTPLAKLISTSSILLGTTITITSNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWy 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  81 tgqwdITQLSYPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILlitSQSLNPTLLTLMSTT 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYILMTASIFLTMNTTNTLSLPTLMVSWTKTPML 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLAYCTTITLppNPSNKTKQWYAKTS 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLN--YNKNKWNLKKKKNK 310

                         330       340
                  ....*....|....*....|...
gi 2329657401 321 TNTLIPALTSLSVSLLPLAPMML 343
Cdd:MTH00160  311 FSLILNFLSFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-315 2.50e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 160.05  E-value: 2.50e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401   1 MTPLAKLISTSSILLGTTITITSNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWY 80
Cdd:MTH00144    1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  81 TGQWDITqlsyppacLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPT-TILLITSQSLNPTLLTLMST 159
Cdd:MTH00144   81 SFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISV 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 160 TSIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYILMTASIFLTMNTTNTLSLpTLMVSWTKTPM 239
Cdd:MTH00144  153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYK 231

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2329657401 240 LSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTKQW 315
Cdd:MTH00144  232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-340 1.61e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 158.02  E-value: 1.61e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401   7 LISTSSILLGTTITITSNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTInawytgQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  87 TQLSYPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSQSLNPTLLTLMSTTSIALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 167 WMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYILMTASIFLTMNTTNTLSLPTLMVSWTKTPMLSTTLML 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 247 TLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLAYcTTITLPPNPSNKTkqwYAKTSTNTLIP 326
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSSLK---SAPYEPKTKIL 318

                         330
                  ....*....|....
gi 2329657401 327 alTSLSVSLLPLAP 340
Cdd:MTH00011  319 --ISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-302 1.29e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 147.51  E-value: 1.29e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  11 SSILLGTTITITSNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGtinaWYTGQWDITQLS 90
Cdd:MTH00197    5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGG----SLSFSNLYLSLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  91 YppaCLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPttILLITSQSLNPTLLTLMSTTSIALGGWMGL 170
Cdd:MTH00197   81 S---VVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGM 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 171 NQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYILMTASIFLTMNTTNTLSLPTLMVSWTKTPMLSTTLMLTLLS 250
Cdd:MTH00197  156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2329657401 251 LAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00197  236 LGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 7.82e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 111.66  E-value: 7.82e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  13 ILLGTTITITSNHWMTAWIGLEINTLSVIPMI-SKSHHPRAIEATTKYFLVQAAASTLLLFSGT-------------INA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCAllcgttgglhlsyINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  79 WYTGQWDITQLSYPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLitSQSLNPTLLTLMS 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 159 TTSIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNP----KLTLLAFYIYILMTASIF---LTMNTTNTLSLPTLM 231
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNLIIEFSG 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2329657401 232 VSwTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRL 296
Cdd:MTH00196  240 LS-RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 1.70e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 109.44  E-value: 1.70e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  14 LLGTTITITSNHWMTAWIGLEINTLSVIPMIS-KSHHPRAIEATTKYFLVQAAASTLLLF--------SGTIN----AWY 80
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAA 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  81 TGQWDITQLSYPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKL----PPTTILLITSQSLNP---TL 153
Cdd:COG1007   192 LAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLL 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 154 LTLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMAI-IITHNPK-LTLLAFY--IYILMTASIFLTMNTTNTLSLPT 229
Cdd:COG1007   272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFAVILLLSRKGGEA 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2329657401 230 LMVS-----WTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLAY 298
Cdd:COG1007   352 EEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.17e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 101.62  E-value: 1.17e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  23 SNHWMTAWIGLEINTLSVIPMI-SKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLSYPP-------- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  94 ---ACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFT-TALLLSTVMKLPP------TTILLITSQSLNPTLLTLmSTTSIA 163
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglirrSLLYLPSSPFIQQILLIL-AIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 164 LGGWMGLNQTQTRKIMAFSSISHIGWM--AIIITHNPKLTLLAFY--IYILMTASIFL--------TMNTTNTLSLPTLm 231
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMliALGAGTIYGIQAAIFHllTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL- 238

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 2329657401 232 vsWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 --AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 3.35e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 99.90  E-value: 3.35e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  14 LLGTTITITSNHWMTAWIGLEINTLSVIPMIS-KSHHPRAIEATTKYFLVQAAASTLLLF--------SGTINAWYTGQW 84
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYgmsllygaTGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  85 DITQLSYPP----ACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKL----PPTTILLITSQSLNPT---L 153
Cdd:PRK05777  193 LADGSGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 154 LTLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWM--AIIITHNPKLTLLAFY--IYILMTASIF--LTMNTTNTLSL 227
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvGLAAGTAEGYSAVLFYllAYLFMTLGAFgvISLLRRKGGEA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2329657401 228 PTL----MVSWTKtPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRL 296
Cdd:PRK05777  353 ESIsdfaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-267 2.12e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 97.39  E-value: 2.12e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  13 ILLGTTITITSNHWMTAWIGLEINTLSVIPMIS-KSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLSY 91
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  92 PPAC----LLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSQSLNPTLLTlmSTTSIALGGW 167
Cdd:MTH00199  186 ILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 168 MGLNQTQTRKIMAFSSISHIGW----MAIIITHNPKLTLLAFYIYILMTA---SIFLTMNTTNTLSLPTLMVSwTKTPML 240
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKNPVI 342

                         250       260
                  ....*....|....*....|....*..
gi 2329657401 241 STTLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  343 ALTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-297 5.59e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.47  E-value: 5.59e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  13 ILLGTTITITSNHWMTAWIGLEINTL-SVIPMISKSHHPRAIEATTKYFLVQAAASTLLLF--------SGTIN----AW 79
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLcFYVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygfTGSLNfedlLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  80 YTGQWDITQLSYPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSQSL-------NPT 152
Cdd:TIGR01770 191 FLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQI 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 153 LLTLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIIT----HNPKLTLLAFYIYILMTASIFLTM------NTT 222
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLagtlEGIKAVLFYIFIYALMSLGAFGVLsllrsyKDE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2329657401 223 NTLSLPTLMVSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 351 WIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 14-271 1.19e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 86.35  E-value: 1.19e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  14 LLGTTITITSNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLS--- 90
Cdd:COG0651   117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAarl 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  91 --YPP-----ACLLLTTAIAIKLGLVPFHFWFPEVL-QGSSFTTALLLSTVMKLPPTTILLITSQSLNP-------TLLT 155
Cdd:COG0651   197 aeLDPglllaAFALLLVGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVYAILRVLTLLFGAdpalflgTLLL 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 156 LMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYI----LMTASIFLT----MNTTNTLSL 227
Cdd:COG0651   277 VLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaiERATGTRDL 356

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 2329657401 228 PTLMVSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELI 271
Cdd:COG0651   357 DKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAAL 400
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-272 5.11e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 76.05  E-value: 5.11e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  15 LGTTITITSNHWMTAWIGLEINTLSVIPMISKSHHPRAI---------EATTKYFLVQAAASTLLLFS------------ 73
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGcalyfgftgneg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  74 --GTINAWYTGQWDITQLSYPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLppTTILLITSQSLNP 151
Cdd:MTH00198  279 mlGTILSATLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 152 TLLTLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYI---LMTASIFLTM--------- 219
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAvtyLVSALASFTVictleefgt 436

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2329657401 220 -------------NTTNTLSLPTLMVSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 272
Cdd:MTH00198  437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIK 502
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 3.04e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 70.42  E-value: 3.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  51 RAIEATTKYFLVQAAASTLLL--FS-------GTINAWYTGQWDI-TQLSYPPACLL----LTTAIAIKLGLVPFHFWFP 116
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFSwlyglsgGEIELQEIVNGLInTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 117 EVLQGSSFTTALLLSTVMKLP----PTTILLITSQSLNP---TLLTLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGW 189
Cdd:CHL00049  239 DVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 190 MAI-IITHNPKL----TLLAFYIYILMT----ASIFLTMNTTNTLSLPTLMVSWTKTPMLSTTLMLTLLSLAGLPPLTGF 260
Cdd:CHL00049  319 VIIgIIVGDSNDgyasMITYMLFYIFMNlgtfACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGF 398


                  ...
gi 2329657401 261 LPK 263
Cdd:CHL00049  399 FGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-192 8.83e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 65.87  E-value: 8.83e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  38 LSVIPM---ISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQW-----DITQLSYPPA-----CLLLTTAIAI 104
Cdd:COG1008   142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 105 KLGLVPFHFWFPEVLQGSSFTTALLLSTVMK-----------LPpttILLITSQSLNPTLLTLmSTTSIALGGWMGLNQT 173
Cdd:COG1008   222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLAAL-GVIGIIYGALVALAQT 297

                         170
                  ....*....|....*....
gi 2329657401 174 QTRKIMAFSSISHIGWMAI 192
Cdd:COG1008   298 DLKRLIAYSSVSHMGFVLL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 6.40e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 63.19  E-value: 6.40e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  33 LEINTLSVIPMIS-KSHHPRAIEATTKYFLVQAAASTLLLFSgtINAWYtGQWDITQLSYPP-------------ACLLL 98
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLG--IALLY-GQYGTLNMAYLAvkmsenptvvakiALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  99 TTAIAIKLGLVPFHFWFPEVLQG--SSFTTALLLSTVMKLPPTTILLIT--SQSLNPT----LLTLMSTTSIALGGWMGL 170
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 171 NQTQTRKIMAFSSISHIGWM------AIIITHNPKL-----TLLAFYIY-----ILMTASIFLT----MNTTNTLSLPTL 230
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMasygeIALAGGIYhivnhALYKALLFLTagavIYETGTRNLNEL 386

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2329657401 231 MVSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-346 3.13e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 61.05  E-value: 3.13e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  33 LEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLS--YPPACLLLT------TAIAI 104
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 105 KLGLVPFHFWFPEVLQG-SSFTTALLLSTVMKLPPTTILLIT----------SQSLNPTLLTLMSTtSIALGGWMGLNQT 173
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYftvfggdfrfALGLGWLLAVLALL-SMLVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 174 QTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYI----LMTASIFLT----MNTTNTLSLPTLMVSWTKTPMLSTTLM 245
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFA 373

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 246 LTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTATTISLLSLLSLFFYLRLAYCTTITLPPNPSNKTkqwYAKTSTNTLI 325
Cdd:PRK08375  374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEAP---KQEAPLGMLA 450

                         330       340
                  ....*....|....*....|...
gi 2329657401 326 P--ALTSLSVSLLPLAPMMLTTT 346
Cdd:PRK08375  451 PslALALLSLLLGIYAGPLLQLA 473
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 23-279 7.81e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 60.01  E-value: 7.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  23 SNHWMTAWIGLEINTLSVIPMISKSHHpRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDI----------TQLSYP 92
Cdd:PRK08668  117 ANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFadisqglindTSTGFA 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  93 PACLLLTTAIAI-KLGLVPFHFWFPEV--LQGSSFTTAL----------LLSTVMKLPPTTILLIT-----SQSLNPTLL 154
Cdd:PRK08668  196 LIVFLFLLAFGVaKAGIFPLHVWAPDAysEAPQSFSAVLsgqlsklgayGFLLVLYVLPGTKLFSEfgtyrGVPLFNYIL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 155 TLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMAI----------------IITHnpkltLLAFYIYILMTASIFLT 218
Cdd:PRK08668  276 AWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVglglgtslgfagglfhVFNH-----ALFKGLFFLIFAAVIYR 350

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2329657401 219 MNTTNTLSLPTLMvswTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTA 279
Cdd:PRK08668  351 TGTTKISEMGGLI---EKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITA 408
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-279 1.25e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 56.10  E-value: 1.25e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  50 PRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQW----DITQLSYPPAC-----LLLTTAIAIKLGLVPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 120 QGSSFTTALLLSTVMKLPPTTILLI-------TSQSLNPTLLTLmSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMAI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAPVLAAL-GVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 193 -IITHNPKLTLLAFYIYI---LMTASIFLTMNT----TNTLSLPTLMVSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKW 264
Cdd:TIGR01972 311 gIFSFNELGISGAVFQMIshgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390

                         250
                  ....*....|....*
gi 2329657401 265 LIIQELIKQELTTTA 279
Cdd:TIGR01972 391 LILLGSFKVNPVVAF 405
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 81-263 6.52e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 54.16  E-value: 6.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  81 TGQWDITQL-SYPPACLLLTTAIAI-------KLGLVPFHFWFPEVLQGSSFTTALLLSTVM---------KLPPTtilL 143
Cdd:PRK12644  184 AGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---F 260

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 144 ITSQSLNPTLLTLMSTTSIaLGGWMGLNQTQTRKIMAFSSISHIGWMAIII---THNPKLTLLAFYI-YILMTASIFLTM 219
Cdd:PRK12644  261 ADVPVWRPTVLVLGLATML-LGGWRALRQHDLKLILAYGTVSQLGFLTVLVgigTRDAALAGLAMLLaHALFKAALFLVV 339

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2329657401 220 ----NTTNTLSLPTLMVSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  340 giidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-194 5.52e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.91  E-value: 5.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  13 ILLGTTITITSNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAA------STLLLFSGTINAWYTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  87 TQLS-----YPPACLLLT-----TAIAIKLGLVPFHFWFPEV-LQGSSFTTALLLSTVMKLPPTTILLITS-------QS 148
Cdd:PRK08676  191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2329657401 149 LNPTLLTLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMAIII 194
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-272 3.00e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 48.96  E-value: 3.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  59 YFLVQAAASTLLLFSGTINAWY-TGQWDITQLSYPPAC-----LLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLST 132
Cdd:PRK08667  166 FYFVMTQLSTVFLMLGIIVLFIqTGSFELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSG 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 133 VM-KLPPTTILLITSQSLNP-----TLLTLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIG--------WMAIIITHNP 198
Cdd:PRK08667  246 VMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVYGLD 325

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 199 KLTLLA-------------FYIYILMTA-SIFLTMNTTNTLSLPTLMVSwtkTPMLSTTLMLTLLSLAGLPPLTGFLPKW 264
Cdd:PRK08667  326 TLALLAlggalfhslnhalFKSLLFLTAgSVVHATGTRNIEKMGGLVKL---MPYTSALFLVGAVSIAALPPFNGFASEL 402


                  ....*...
gi 2329657401 265 LIIQELIK 272
Cdd:PRK08667  403 LLYESFFQ 410
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 4.48e-06

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 48.12  E-value: 4.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  50 PRAIEATTKYFLVQAAASTLLLF---------SGTINAWYTGQWDITQLSYPPACLLL--TTAIAIKLGLVPFHFWFPEV 118
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgssllyglsGGSTQLSAIALALITSPSLGLALALVfvIAGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 119 LQGSSFTTALLLST---------VMKLPPTTILLITSQSlnPTLLTLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGW 189
Cdd:PRK02504  237 YEGSPTPVVAFLSVgskaagfalAIRLLVTAFPSFDEQW--KLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGF 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 190 MAI--IITHNPKLTLLAFY--IYILMT----ASIFLTMNTTNTLSLPTLMVSWTKTPMLSTTLMLTLLSLAGLPPLTGFL 261
Cdd:PRK02504  315 VMIglVAGTEAGYASMVFYllAYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFF 394


                  ..
gi 2329657401 262 PK 263
Cdd:PRK02504  395 GK 396
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-271 7.11e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 47.84  E-value: 7.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  48 HHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLS-----------YPPACLLLTTAIAIKLGLVPFHFWFP 116
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLaaaptilssplLTLILLLLLLGAFGKSAQFPLHFWLP 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 117 EVLQGSSFTTALLLSTVM---------KLPPttiLLITSQSLNPTLLTLMSTTSIaLGGWMGLNQTQTRKIMAFSSISHI 187
Cdd:COG1009   236 DAMEGPTPVSALLHAATMvkagvyllaRLSP---LFALSPVWLTVVAIIGAITAL-FAALIALAQTDIKRVLAYSTVSQL 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 188 GWMAI-------------IITHnpkltllAFYIYIL-MTA-SIFLTMNTTNTLSLPTLmvsWTKTPMLSTTLMLTLLSLA 252
Cdd:COG1009   312 GYMFLalgvgayvaalfhLLTH-------AFFKALLfLGAgSVIHATGTRDIRKMGGL---RKKMPITAITFLIGALSLA 381

                         250
                  ....*....|....*....
gi 2329657401 253 GLPPLTGFLPKWLIIQELI 271
Cdd:COG1009   382 GIPPFAGFFSKEAILEAAL 400
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-192 7.54e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 47.62  E-value: 7.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  20 TITSNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFsGTINAWYTGQwdiTQLSYPPACLLLT 99
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALF-GTILVYANAA---TVMGDGEMAILWT 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 100 TAIAI----------------------KLGLVPFHFWFPEV-LQGSSFTTALLLSTVMKLPPTTIL---LITSQSLNP-- 151
Cdd:PRK06458  200 ELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAhSEAPSPVSALLSGVLLNVALYAVLryyILIDAAIGSdf 279

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2329657401 152 --TLLTLMSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMAI 192
Cdd:PRK06458  280 pgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 91-266 1.44e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 46.84  E-value: 1.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  91 YPPACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVM-KLpptTILLITSqsLNP---------TLLTLMSTT 160
Cdd:PRK12647  194 YLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMvKA---GIYLLAR--LNPvlggtplwqTILPLFGGL 268

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 161 SIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYI----LMTASIFLTMNT----TNTLSLPTLMV 232
Cdd:PRK12647  269 TMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIidheTGTRDITKLGG 348

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2329657401 233 SWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK12647  349 LRRAMPITAAAALLAALSMAGLPPLFGFLAKELI 382
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-230 5.29e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 45.02  E-value: 5.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  55 ATTKYFLVQAAASTLLLFSGTINAWYTGQ--WDITQL---SYPPACLLLT-----TAIAIKLGLVPFHFWFPEVLQGSSF 124
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELgakSYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 125 TTALLLSTVM-KLPPTTILLITSQSLN-------PTLLTLmSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIITH 196
Cdd:PRK12561  218 PVSMILAGVLlKMGGYALIRFNVQMLPdahvyfaPALAIL-GVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAA 296

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 2329657401 197 NPKL----TLLAFYIYILMTASIFL----TMNTTNTLSLPTL 230
Cdd:PRK12561  297 FTDLgisgAMLQMISHGLIAAALFFltgvTYERTHTLSIPNM 338
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 38-194 5.34e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.81  E-value: 5.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  38 LSVIPM---ISKSHHPRAIEATTKYFLVQAAASTLLLFS----GTINAWYTGQWDITQL---SYPPA-------CLLLtt 100
Cdd:PRK05846  142 AMLIPMyflIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlnlPLPPGvqywlflAFFI-- 219

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 101 AIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVM-----------KLPpttILLITSQSLNPTLLTLmSTTSIALGGWMG 169
Cdd:PRK05846  220 AFAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILlkmgaygllrfSLP---LFPDASHEFAPIIITL-GVIAIIYGALVA 295

                         170       180
                  ....*....|....*....|....*
gi 2329657401 170 LNQTQTRKIMAFSSISHIGWMAIII 194
Cdd:PRK05846  296 LAQTDIKKLIAYSSISHMGFVTLGI 320
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 8.37e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 44.43  E-value: 8.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  48 HHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLSYPPAC--------LLLTTAIAIKLGLV------PFHF 113
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 114 WFPEVLQGSSFTTALLLSTVMKlpPTTILLITSQ----SLNPTLLTLMSTTSIA---LGGWMGLNQTQTRKIMAFSSISH 186
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMV--KAGVYLVARIhpifSGTEAWFILVSGTGMItmvLAGFLAFRQTDIKAILAYSTISQ 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 187 IGWMAII----ITHNPKLTLLAFYIYIL----MTASIFLTM----NTTNTLSLPTLMVSWTKTPMLSTTLMLTLLSLAGL 254
Cdd:PRK12649  314 LAYLMTMygytTYHEPGLGVAAATFHLLnhatFKACLFLVAgivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGI 393


                  ....*....
gi 2329657401 255 PPLTGFLPK 263
Cdd:PRK12649  394 PPLNGFLSK 402
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 23-272 1.19e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.57  E-value: 1.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  23 SNHWMTAWIGLEINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLF--------SGTINAwyTGQWDITQLSYPP- 93
Cdd:PRK12662  129 SNDVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIgigflyaiTGTLNM--GDMFLIIQDLPTNr 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  94 ----ACLLLTTAIAIKLGLVPFHFWFPEVLQGS-SFTTALLLSTVMKLPPTTI-----------LLITSQSLNPTLLTLm 157
Cdd:PRK12662  207 aiqiGVLFIMVGLFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIirivydvfkanFVFTTLPFNNVFMIL- 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 158 STTSIALGGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYI----LMTASIFLTMNTT----NTLSLPT 229
Cdd:PRK12662  286 AALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfGTTKLED 365

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2329657401 230 LMVSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 272
Cdd:PRK12662  366 CLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 1.22e-04

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 39.16  E-value: 1.22e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2329657401 291 FFYLRLAYCTTITLPPNPSNKTKQW-YAKTSTNTLIPALTSLSVSLLPLAP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWrFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK12650 PRK12650
DUF4040 family protein;
98-263 1.31e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.88  E-value: 1.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  98 LTTAIAI--------KLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSQSL--NPT---LLTLMSTTSIAL 164
Cdd:PRK12650  206 LTTVVAVliavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALM 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 165 GGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIYI----LMTASIFLTM----NTTNTLSLPTLMVSWTK 236
Cdd:PRK12650  286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIgvvdHQAGTRDIRRLGSLWRR 365

                         170       180
                  ....*....|....*....|....*..
gi 2329657401 237 TPMLSTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650  366 MPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
96-268 2.74e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.63  E-value: 2.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  96 LLLTTAIAIKLGLVPFhFWFPEVLQGSSFTTALLLSTVMK-------LPPTTILLITSQSLNPTLLTLMSTTSIALGGWM 168
Cdd:PRK12663  211 LLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALG 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 169 GLNQTQTRKIMAFSSISHIGWM-AIIITHNPK-LTLLAFY---IYILMTASIFLT---MNTTNTLSLPTLMVSWTKTPML 240
Cdd:PRK12663  290 ALAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYlvhDMVVKTALFLIAgslVRLTGYRSLQYLGGLYRKEPLF 369

                         170       180
                  ....*....|....*....|....*...
gi 2329657401 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663  370 GALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 96-272 6.86e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.35  E-value: 6.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  96 LLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTV-MKLPPTTILLITSQSLNPTL-----LTLMSTTSIALGGWMG 169
Cdd:PRK08042  184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 170 LNQTQTRKIMAFSSISHIGWMAI--------IITHNPKLTLLAFY--IYILMTASIFLTM---------NTTNTLSLPTL 230
Cdd:PRK08042  264 LMEHNIQRLLAYHTLENIGIILLglgagvtgIALEQPALIALGLVggLYHLLNHSLFKSVlflgagsvwFRTGHRDIEKL 343

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 2329657401 231 MVSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 272
Cdd:PRK08042  344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 1.09e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 40.72  E-value: 1.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  96 LLLTTAIAIKLGLVPFHFWFPEvlqgsSFTTALLLST-----------VMKLPPTTILLITSQSLNpTLLTLMSTTSIAL 164
Cdd:PRK12665  213 AVLLVAFGIKAAVFPLSFWLPD-----SYPTAPAPVTavfaglltkvgVYAIIRTHTLLFPGGGLD-TLLMVVALLTMVV 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 165 GGWMGLNQTQTRKIMAFSSISHIGWMAIIITHNPKLTLLA--FYI--YILMTASIFLTM----NTTNTLSLPTLMVSWTK 236
Cdd:PRK12665  287 GILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGaiYYVahHITVQTTLFLVVglieRQAGSSSLRRLGGLAKA 366

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2329657401 237 TPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665  367 SPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-233 1.53e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.29  E-value: 1.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 101 AIAIKLGLVPFHFWFPEV-LQGSSFTTALLLSTVMKLP-------PTTILLITSQSLNPTLLTlMSTTSIALGGWMGLNQ 172
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGgyglvrlSWPILPLGAQNLAPAVIA-MGIVGIVYGSFATCRQ 317

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2329657401 173 TQTRKIMAFSSISHIGWMAI-IITHNpkltllafyiYILMTASIFLTMNTTNTLSLPTLMVS 233
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSItLVTHD----------IIGLTGSIFIMLAHGIVSSLLFILVT 369
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-268 1.74e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 40.33  E-value: 1.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 105 KLGLvpfHFWFPEVLQGSSFTTALLLSTVMKLPPTTIL-----LITSQSLNPTLLTLMSTTSIALGGWMGLNQTQTRKIM 179
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVI 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 180 AFSSISHIGWMAIII----THNPKLTLL---AFYIYIL-MTASIFLTMNTTNTLSLPTLMVSWTKTPMLSTTLMLTLLSL 251
Cdd:MTH00032  318 AYSTCSQLGYMVLIIgiegSHNVGLFHLvnhAFFKALLfLSAGSVIHSTTVDEQDMRKMGGLIHSIPFTYTMMLIGSFSI 397

                         170
                  ....*....|....*..
gi 2329657401 252 AGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032  398 MGLPYLTGFYSKDLILE 414
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
14-136 2.47e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 39.68  E-value: 2.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  14 LLGTTITITSNHW---MTAW--IGLEINTLSVIpmisKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQ 88
Cdd:PRK08168  110 LAAVHLLVLSDHLlvlIAAWaaISLALHRLLCF----YPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSA 185

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2329657401  89 L-----SYPP------ACLLLTTAIAIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKL 136
Cdd:PRK08168  186 LwahlaAQGAspslqaAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNL 244
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-204 2.64e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 39.68  E-value: 2.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  55 ATTKYFLVQAAASTLLLFSGTINAWYTGqwdITQLSYPPAC---------LLLTTAI----AIKLGLVPFHFWFPEV-LQ 120
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSG---ASSFDYEPLRshtlplstqLLLLAPIlvgfGIKIPLVPFHTWLPDAhVE 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 121 GSSFTTALLLSTVMKLPPTTIL-------LITSQSLNPTLLTLmSTTSIALGGWMGLNQTQTRKIMAFSSISHIGWMAII 193
Cdd:PRK06473  235 ASTPVSVLLAGVLLKLGTYGLLrfgvglfPEAWVYLAPWLATW-AVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLA 313

                         170
                  ....*....|.
gi 2329657401 194 ITHNPKLTLLA 204
Cdd:PRK06473  314 AAAATPLSILA 324
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 15-273 4.44e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 39.00  E-value: 4.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  15 LGTTITITSNHWMTAWIGLEINTLS---VIPMISKSHHPRAIeattkyFLVQAAASTLLLFSGTINAWY-TGQWDITQLS 90
Cdd:PRK06459   83 LGMAIVLTSDNYLLFLAGWEIMTIPsyvAIALTKKNKRPAFV------FMAFGELSTVLILAGFAWAFIiSGTTNFSYLP 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  91 YPPACLLLTTAIAIKLGLVPFHF--WFPEVLQGSSFTTALLLSTVMKLPPTTILLITSQSLNPT-------LLTLMSTTS 161
Cdd:PRK06459  157 SPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILKMTILTQTIpigyfglTILAIGAFS 236

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 162 IALGGWMGLNQTQTRKIMAFSSISHIGWM-----AIIITHNPKLTLLAFYIYILMTAS---------IFLTMNTTNTLSL 227
Cdd:PRK06459  237 ILFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILYSfahsvaktgLFLSSGLQEKQSI 316

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 2329657401 228 PTLmvSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQ 273
Cdd:PRK06459  317 TYS--KKIRNRWIELGLTLLASSLSGLLPNIGGVASWLLLESLFMF 360
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
60-268 4.83e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 38.54  E-value: 4.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  60 FLVQAAASTLLLFSGTINAWYTGQwdITQ-LSYPPACLLLTTAI---AIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMK 135
Cdd:PRK07363  171 LLVLAAFLGIVWLSGSTSFDYDAI--STQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLA 248

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 136 LPPTTILLITSQSLNPTLLTLMS-------TTSIALGGWMGLNQTQTRKIMAFSSISHIGW----------------MAI 192
Cdd:PRK07363  249 KLGTYGLLRFGLQLFPQTWSLVApglaiigTISVIYGALSAIAQKDIKRMVAYSSIGHMGYilvaaaagtqlsllgaVAQ 328

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2329657401 193 IITHNPKLTLLaFYIYILMTASIfltmNTTNTLSLPTLMVSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK07363  329 MISHGLILALL-FHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQ 399
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 8.34e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 37.70  E-value: 8.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401  34 EINTLSVIPMISKSHHPRAIEATTKYFLVQAAASTLLLFSGTINAWYTGQWDITQLSY--------PP---ACLLLTTAI 102
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnptsPViygGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 103 AIKLGLVPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLIT-----SQSLNPTLLTLMSTTSIA---LGGWMGLNQTQ 174
Cdd:PRK06277  210 LYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIfklfgGLSYFPSAQGVLIALSVLamvFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329657401 175 TRKIMAFSSISHIGWMAIIITHNPKLTLLAFYIY----ILMTASIFL-------TMNTTNTLSLPTLMvswTKTPMLSTT 243
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHainhVIYKSALFLgagivsyRTKTSNLRKLGGLL---PVMPVVAFM 366

                         250       260
                  ....*....|....*....|....*
gi 2329657401 244 LMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277  367 VLCAKLAISGVPPFNGFQSKLMLAQ 391
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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