NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2329675899|gb|UZP47302|]
View 

NADH dehydrogenase subunit 4 (mitochondrion) [Eotmethis rufemarginis]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 7.10e-166

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 473.87  E-value: 7.10e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899   1 MLKYLFMLVFMTPLCLIGNFWWLVHSLMFVVSFFFMLGVYSYSDLNMISWFFGVDYFSFGLILLSFWICSLMITASSSVY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  81 LSSYHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 161 VYDCSFTLYFPLLLDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 241 LGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 2329675899 401 YSQHGSYYGGVYTCSLGYIREYHLLLLHWFPLNVLCLKGEYFFF 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 7.10e-166

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 473.87  E-value: 7.10e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899   1 MLKYLFMLVFMTPLCLIGNFWWLVHSLMFVVSFFFMLGVYSYSDLNMISWFFGVDYFSFGLILLSFWICSLMITASSSVY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  81 LSSYHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 161 VYDCSFTLYFPLLLDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 241 LGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 2329675899 401 YSQHGSYYGGVYTCSLGYIREYHLLLLHWFPLNVLCLKGEYFFF 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-358 3.48e-51

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 179.89  E-value: 3.48e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  48 ISWFFGVDYFSFGLILLSFWICSLMITASSSVylSSYHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAILASWNE--IKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 128 LGWGYqPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTLYFPLL------LDFGSFYFLFYLFIIlAFLIKMPMFLVH 201
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAelaaapLPLTAQLLLFLAFFI-AFAVKVPMFPFH 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkvisfLGL------SFNYFWLALGLSGGVVVSFICFRQVDLKSLIA 275
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIA 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 276 YSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNM 355
Cdd:COG1008   305 YSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASL 384


                  ...
gi 2329675899 356 AAP 358
Cdd:COG1008   385 GLP 387
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 113-388 2.54e-49

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 169.80  E-value: 2.54e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 113 YIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTLYFPLLLDFGSFY------FLFYLF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssglLLLFLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 187 IILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFICFR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2329675899 346 WWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLS 388
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 48-399 4.28e-43

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 157.79  E-value: 4.28e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  48 ISWFFGVDYFSFGLILLSFWICSLMITASSSVYLSSYHSSIFVFLVLFLMIMlyCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASWESIQKRVKEFYALLLLLEAGVI--GVFLALDLFLFYVFWEAMLIPMYLLI 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 128 LGWGyQPERLQAGIYLIFYTLVASLPLLL-VLFKVYDCSFTLYFPLLLD----FGSFYFLFYLFIIlAFLIKMPMFLVHL 202
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLaILGLYFLGGGTFDLLELLNlplpFGVQTWLFLAFFI-AFAVKVPLFPLHT 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAH 281
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 282 MSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPpsl 361
Cdd:TIGR01972 305 MGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLP--- 381

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 2329675899 362 nLLGELSLLNSIISWSSLSFLTLMFLS----FFSAVYTLYMY 399
Cdd:TIGR01972 382 -GTSGFVGEFLILLGSFKVNPVVAFLAalgiVLAAAYMLTLY 422
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 7.10e-166

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 473.87  E-value: 7.10e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899   1 MLKYLFMLVFMTPLCLIGNFWWLVHSLMFVVSFFFMLGVYSYSDLNMISWFFGVDYFSFGLILLSFWICSLMITASSSVY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  81 LSSYHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 161 VYDCSFTLYFPLLLDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 241 LGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 321 IYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 2329675899 401 YSQHGSYYGGVYTCSLGYIREYHLLLLHWFPLNVLCLKGEYFFF 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 26-443 5.16e-116

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 346.06  E-value: 5.16e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  26 SLMFVVSFFFMLGVYSYsdlnmiswFFGVDYFSFGLILLSFWICSLMITASSSVYLSSYHSSIFVFLVLFLMIMLYCSFS 105
Cdd:MTH00150    2 SLLLLYSSFSSYESLSE--------LFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFS 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 106 SLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVL---FKVYDCSFTLYFPLLLDFGSFYFL 182
Cdd:MTH00150   74 VSSLLMFYFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVIlwmSSSYGSSFMLLISSLRKLLSSMGL 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 183 FYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSF 262
Cdd:MTH00150  154 WGLLVFLAFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSL 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 263 ICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPS 342
Cdd:MTH00150  234 ICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPS 313

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 343 MALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYSYSQHGSYYGGVYTCSLGYIREY 422
Cdd:MTH00150  314 LSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEM 393

                         410       420
                  ....*....|....*....|.
gi 2329675899 423 HLLLLHWFPLNVLCLKGEYFF 443
Cdd:MTH00150  394 LLLLLHWVPLLLLILKSDLLF 414
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-440 1.29e-111

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 335.94  E-value: 1.29e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899   1 MLKYLFMLVFMTPLCLIGNFWWLVHS---LMFVVSFFFMLGVYSYSDLNMISWFFGVDYFSFGLILLSFWICSLMITASS 77
Cdd:MTH00014    1 MLKLIMPLISLLLLPLIKYPWSWALTfstLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  78 SVYLSSYHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLV 157
Cdd:MTH00014   81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 158 LFKVYDCSFTLYFPLL-LDFGSFYF--LFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV 234
Cdd:MTH00014  161 ILLIFYTNNSLSMLMSsMEPPSIYLmnLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 235 MKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGL 314
Cdd:MTH00014  241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 315 FCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVY 394
Cdd:MTH00014  321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 2329675899 395 TLYMYSYSQHGSYYGGVYTCSLGYIREYHLLLLHWFPLNVLCLKGE 440
Cdd:MTH00014  401 SLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPD 446
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-444 3.30e-111

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 334.64  E-value: 3.30e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899   1 MLKYLFMLVFMTPLCLIGNFWWLVHSLMFVVSFFFMLGVYS-YSDLNMISWFFGVDYFSFGLILLSFWICSLMITASSSV 79
Cdd:MTH00205    1 MSIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNsFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  80 YLSSYHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLF 159
Cdd:MTH00205   81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 160 KVYDCSFTLYFPLLLDFGSFYFLFYLFII---LAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMK 236
Cdd:MTH00205  161 FLNSLNFSLSMFFNFPLNFSDFYLFLYWIflmLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 237 VISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFC 316
Cdd:MTH00205  241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 317 LSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVYTL 396
Cdd:MTH00205  321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 2329675899 397 YMYSYSQHGSYYGGVYTCSLGYIREYHLLLLHWFPLNVLCLKGEYFFF 444
Cdd:MTH00205  401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFIC 448
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-440 1.13e-101

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 310.59  E-value: 1.13e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899   1 MLKYLFMLVFMTPLCLI--GNFWWL---VHSLMFVVSFFFMLGVYSYSDLNMISWFfGVDYFSFGLILLSFWICSLMITA 75
Cdd:MTH00124    1 MLKIILPTIMLIPTTLLskPKFLWTnttTYSLLIALLSLQWLKPPYYPTKNLTQWL-GIDQISAPLLVLSCWLLPLMILA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  76 SSSVYLSSYHSS--IFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00124   80 SQNHLQHEPLQRkrTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 154 LLLVLFKVYDCSFTLYFPLLLDFGSF------YFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00124  160 LLIAILYLHNQTGTLSLPMLQLTHPTltnswtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 228 GYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGH 307
Cdd:MTH00124  240 GYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAH 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFL 387
Cdd:MTH00124  320 GLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLA 399

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2329675899 388 SFFSAVYTLYMYSYSQHGSYYGGVYTCSLGYIREYHLLLLHWFPLNVLCLKGE 440
Cdd:MTH00124  400 TLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPE 452
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-444 5.05e-99

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 303.76  E-value: 5.05e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899   1 MLKYLF---MLVFMTPLCLIGNFWWLVHSLMFVVSFF-FMLGVYSYSDLNMISWFFGVDYFSFGLILLSFWICSLMITAS 76
Cdd:MTH00068    1 MLKIIIptlMLLPTTWLSPKKWLWTLTTTNSLIIAFLsLMWFNLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  77 SSvYLSS---YHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00068   81 QN-HLKNepiNRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 154 LLLVLFKVYDCSFTLYFPLLLDFGSFYF------LFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00068  160 LLIALLILQNSLGSLSLILLELMSPMQLmtytnkIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 228 GYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGH 307
Cdd:MTH00068  240 GYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISH 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFL 387
Cdd:MTH00068  320 GLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLG 399

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2329675899 388 SFFSAVYTLYMYSYSQHGSYYGGVYTCSLGYIREYHLLLLHWFPLNVLCLKGEYFFF 444
Cdd:MTH00068  400 TLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISG 456
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 6-432 5.44e-97

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 298.81  E-value: 5.44e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899   6 FMLVFMTPLCLIGNFWWLVHSLMFVVSFF--FMLGVYSYSDLNMISWFFGVDYFSFGLILLSFWICSLMITASSSV--YL 81
Cdd:MTH00044    9 LGIAITSWIVPKNKLWPISISQSSLISLLslFLLNNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLASINHlsNN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  82 SSYHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKV 161
Cdd:MTH00044   89 SPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISLIAI 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 162 YDCSFTLYFPL------LLDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVM 235
Cdd:MTH00044  169 YSSSSSLSIPLselnwlTSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLI 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 236 KVISFLGLSF-NYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGL 314
Cdd:MTH00044  249 NLFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSAL 328

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 315 FCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVY 394
Cdd:MTH00044  329 FCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFGAIY 408

                         410       420       430
                  ....*....|....*....|....*....|....*...
gi 2329675899 395 TLYMYSYSQHGSYYGGVYTCSLGYIREYHLLLLHWFPL 432
Cdd:MTH00044  409 SLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPL 446
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 5-438 2.33e-94

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 291.46  E-value: 2.33e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899   5 LFMLVFMTPLCLIGNFWWLVHSLMFVVSFFFMLGVYSYSDLNMISW--FFGVDYFSFGLILLSFWICSLMITASSSVYLS 82
Cdd:MTH00206    6 LIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSnlYLSYDPLSSPLVILSCWLLPLMFLASQNHMKN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  83 SYHS--SIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00206   86 EPINrqRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLF 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 161 VYDCSFTLYFPLLLDFGSFYF---LFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKV 237
Cdd:MTH00206  166 LQNSLGSLSLYILYFSKLTTWnnnLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILI 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 238 ISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCL 317
Cdd:MTH00206  246 LGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 318 SNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVYTLY 397
Cdd:MTH00206  326 ANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLY 405

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 2329675899 398 MYSYSQHGSYYGGVYTCSLGYIREYHLLLLHWFPLNVLCLK 438
Cdd:MTH00206  406 MFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILN 446
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-437 1.12e-91

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 284.86  E-value: 1.12e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899   1 MLKYLFMLVFMTPLCLIGNFWWL-----VHSLMFVVSFFFMLGVYSYSDLNMISWFFgVDYFSFGLILLSFWICSLMITA 75
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIwinttTYSLLISLISLLLLNQPNDNSLNFSLLFF-SDSLSTPLLILTTWLLPLMLMA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  76 SSSVYL--SSYHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00110   80 SQHHLSkePLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 154 LLLVLFKVYDCSFTLYFPLL------LDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00110  160 LLVALLYIQNNLGSLNFLLLqlwaqpLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 228 GYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGH 307
Cdd:MTH00110  240 GYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAH 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFL 387
Cdd:MTH00110  320 GLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLN 399

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|
gi 2329675899 388 SFFSAVYTLYMYSYSQHGSYYGGVYTCSLGYIREYHLLLLHWFPLNVLCL 437
Cdd:MTH00110  400 MLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSL 449
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-440 4.36e-82

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 260.27  E-value: 4.36e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899   1 MLKYLFMLVFMTPLCLIGNFWWL-----VHSLMFVVSFFFMLGVYSYSDLNMISWFFGVDYFSFGLILLSFWICSLMITA 75
Cdd:MTH00127    1 MLKILIPTLMLIPTTWLTPAKWLwtttlAHSLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  76 SSSVYLSSYHSS--IFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLP 153
Cdd:MTH00127   81 SQNHTAPEPINRqrMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 154 LLLVLFKVYDCSFTL------YFPLLLDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00127  161 LLVALLLLQNSTGTLsmltlqYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 228 GYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGH 307
Cdd:MTH00127  241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 308 GLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFL 387
Cdd:MTH00127  321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2329675899 388 SFFSAVYTLYMYSYSQHGSYYGGVYTCSLGYIREYHLLLLHWFPLNVLCLKGE 440
Cdd:MTH00127  401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPE 453
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-358 3.48e-51

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 179.89  E-value: 3.48e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  48 ISWFFGVDYFSFGLILLSFWICSLMITASSSVylSSYHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALLTPLAILASWNE--IKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 128 LGWGYqPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTLYFPLL------LDFGSFYFLFYLFIIlAFLIKMPMFLVH 201
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAelaaapLPLTAQLLLFLAFFI-AFAVKVPMFPFH 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkvisfLGL------SFNYFWLALGLSGGVVVSFICFRQVDLKSLIA 275
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFA-----LPLfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIA 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 276 YSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNM 355
Cdd:COG1008   305 YSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASL 384


                  ...
gi 2329675899 356 AAP 358
Cdd:COG1008   385 GLP 387
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 113-388 2.54e-49

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 169.80  E-value: 2.54e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 113 YIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTLYFPLLLDFGSFY------FLFYLF 186
Cdd:pfam00361   8 YLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssglLLLFLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 187 IILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFICFR 266
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILAL 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2329675899 346 WWFLLSSSNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLS 388
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 52-397 2.06e-45

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 164.71  E-value: 2.06e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  52 FGVDYFSFGLILLSFWI--CSLMITASSSVYLSSYhssiFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILG 129
Cdd:MTH00226   98 FAVDGISIYFIILTGFIvpCSILISWHSVKYLTKS----FLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGI 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 130 WGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTLYFPLLLDF-----GSFYFLFYLFIILAFLIKMPMFLVHLWL 204
Cdd:MTH00226  174 WGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCshvvsEQTQKWIFLGIFLAMAVKIPIFPFHIWL 253

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 205 PKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGL-SFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMS 283
Cdd:MTH00226  254 PKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAqNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMG 333

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 284 MVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNL 363
Cdd:MTH00226  334 LVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNF 413

                         330       340       350
                  ....*....|....*....|....*....|....
gi 2329675899 364 LGELSLLNSIISWSSLSFLTLMFLSFFSAVYTLY 397
Cdd:MTH00226  414 IGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 53-399 3.74e-45

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 163.70  E-value: 3.74e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  53 GVDYFSFGLILLSFWICsLMITASSSVYLSSYhssiFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWGY 132
Cdd:MTH00204   83 GVSLFFILLTTLLIPIC-ILISWKSIKFLFKE----FLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGS 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 133 QPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTL-YFPLLLDFGSFYFLFYLFI--ILAFLIKMPMFLVHLWLPKAHV 209
Cdd:MTH00204  158 REEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTdYQILLNIKLPLSIQKWLLVgfFLSLAVKIPQIPFHIWLPQAHV 237

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 210 EAPISGSMILAGVLLKLGGYGIFRVMKVIsFLGLSFNYFWLALGLSGGVVV--SFICFRQVDLKSLIAYSSVAHMSMVIG 287
Cdd:MTH00204  238 EAPVAGSVILAGILLKLGGYGFLRFSWPL-FPAASEYFAPLIVMLSVIAVIygSLTTCRQVDFKRLIAYSSVAHMGLVPL 316

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 288 GLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPPSLNLLGEL 367
Cdd:MTH00204  317 GLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEF 396

                         330       340       350
                  ....*....|....*....|....*....|..
gi 2329675899 368 SLLNSIISWSSLSFLTLMFLSFFSAVYTLYMY 399
Cdd:MTH00204  397 FSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 48-344 4.39e-45

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 163.45  E-value: 4.39e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  48 ISWFFGVDYFSFGLILLSFWICSLMITASSSVYLSSYHSsiFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:PRK05846   74 ISYHLGVDGISLLLVVLTALLTPLAVLASWEEIKKRVKF--YMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 128 LGWGYqPERLQAGIYLIFYTLVASLPLLLVLFkvydcsfTLYFPLLLDFGSF---------------YFLFYLFIIlAFL 192
Cdd:PRK05846  152 GVWGG-KNRIYAATKFFLYTLLGSLLMLVAII-------YLVVVYYNATGTFdiadllnlplppgvqYWLFLAFFI-AFA 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 193 IKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVIsFLGLS--FNYFWLALGLSGGVVVSFICFRQVDL 270
Cdd:PRK05846  223 VKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPL-FPDASheFAPIIITLGVIAIIYGALVALAQTDI 301

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2329675899 271 KSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMA 344
Cdd:PRK05846  302 KKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLA 375
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 48-399 4.28e-43

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 157.79  E-value: 4.28e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  48 ISWFFGVDYFSFGLILLSFWICSLMITASSSVYLSSYHSSIFVFLVLFLMIMlyCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:TIGR01972  69 ISYHLGVDGISLLLVLLTALLTLLAILASWESIQKRVKEFYALLLLLEAGVI--GVFLALDLFLFYVFWEAMLIPMYLLI 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 128 LGWGyQPERLQAGIYLIFYTLVASLPLLL-VLFKVYDCSFTLYFPLLLD----FGSFYFLFYLFIIlAFLIKMPMFLVHL 202
Cdd:TIGR01972 147 GVWG-GPNRIYAAMKFFLYTLAGSLLMLLaILGLYFLGGGTFDLLELLNlplpFGVQTWLFLAFFI-AFAVKVPLFPLHT 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAH 281
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 282 MSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPpsl 361
Cdd:TIGR01972 305 MGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLP--- 381

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 2329675899 362 nLLGELSLLNSIISWSSLSFLTLMFLS----FFSAVYTLYMY 399
Cdd:TIGR01972 382 -GTSGFVGEFLILLGSFKVNPVVAFLAalgiVLAAAYMLTLY 422
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 51-358 1.90e-42

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 155.98  E-value: 1.90e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  51 FFGVDYFS-FGLILLSFW--ICSLmITASSSVYLSSYhssiFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:MTH00217   75 VFAVDGISiFFLILTALLtpICIL-ISWNSIKFLIKE----FLLCLLVIEILLMGVFTILDLVGFYILFEGILIPMFLII 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 128 LGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTLYFPLL----LDFGSFYFLFYLFIiLAFLIKMPMFLVHLW 203
Cdd:MTH00217  150 GIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQALcclkIEKELQYFIFLGFF-LSLAIKIPKIPFHIW 228

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 204 LPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHM 282
Cdd:MTH00217  229 LPQAHVEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASEYFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHM 308

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2329675899 283 SMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAP 358
Cdd:MTH00217  309 GLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIP 384
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 33-418 1.32e-38

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 143.89  E-value: 1.32e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  33 FFFMLGVYSYSDLNMISWFFGVDYFSFGLILLsfwiCSLMITASSSVYLSSYHSSIFVFLVLFLMIMLYCSFSSLSLLSF 112
Cdd:MTH00094   12 FFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVL----LIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFVSSNMLML 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 113 YIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTLYFPLLLDFGSFYFLfylfiILAFL 192
Cdd:MTH00094   88 YMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFIL-----SLSFM 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 193 IKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLglsFNYFWLALGLSGGVVVSFICFRQVDLKS 272
Cdd:MTH00094  163 MKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFV---YNNFWIIFSLLGMILSSFCCVFQSDSKS 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 273 LIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSS 352
Cdd:MTH00094  240 LAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFL 319

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2329675899 353 SNMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAVYTLYMYSYSQHGSYYGGVYTCSLGY 418
Cdd:MTH00094  320 SNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGL 385
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 48-341 2.33e-33

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 131.31  E-value: 2.33e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  48 ISWFFGVDYFSFGLILLSFWICSLMITASSSVylsSYHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:PRK12561   51 LEWSLGVDGLSMPLVLLSGLITTLSIFASWKV---TRKPRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLI 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 128 LGWGYQpERLQAGIYLIFYTLVASLPLLL--VLFKVYDCSFTLYFPLLL--DF-GSFYFLFYLFIILAFLIKMPMFLVHL 202
Cdd:PRK12561  128 SIWGGQ-KRLYAATKFILYTALASIFILVagLALALSGDTFTFDLAELGakSYpLALELLLYAGFLIAFGVKLPIFPLHT 206

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAH 281
Cdd:PRK12561  207 WLPDAHGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSH 286

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 282 MSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMP 341
Cdd:PRK12561  287 MGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMP 346
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 52-359 2.90e-27

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 112.93  E-value: 2.90e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  52 FGVDYFSFGLILLSFwICSLMITASSSVYLSSYHS-SIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGW 130
Cdd:COG0651    72 LVADRLSALFLLLTA-LVALAVLLYSIGYMRHERRgRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALG 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 131 GYqPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTLYFPLL------LDFGSFYFLFyLFIILAFLIKMPMFLVHLWL 204
Cdd:COG0651   151 GT-KEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarlaeLDPGLLLAAF-ALLLVGFGIKAALFPLHFWL 228

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 205 PKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI--SFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHM 282
Cdd:COG0651   229 PDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLfgADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQI 308

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2329675899 283 SMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:COG0651   309 GYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPP 385
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 48-358 6.94e-27

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 112.88  E-value: 6.94e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  48 ISWFFGVDYFSFGLILLSFWICSLMITASSSVylsSYHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:PRK02546   79 LTWSVGADGLSMPLILLTGFITTLAVLAAWPV---TFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLL 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 128 LGWGYQpERLQAGIYLIFYTLVASLPLLLVLFKVY----DCSFTLYFPLLLDFG-SFYFLFYLFIILAFLIKMPMFLVHL 202
Cdd:PRK02546  156 AIWGGK-KRQYAATKFILYTAGSSLFILLAALAMAfygdTPTFDMTALAAKDFGlGFQLLCYAGLLIAYGVKLPIVPLHT 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAH 281
Cdd:PRK02546  235 WLPDAHGEATAPVHMLLAGILLKMGGYALLRMnAGMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISH 314

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2329675899 282 MSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAP 358
Cdd:PRK02546  315 MGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALP 391
ndhD CHL00011
NADH dehydrogenase subunit 4
 50-393 7.55e-26

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 109.65  E-value: 7.55e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  50 WFFGVDYFSFGLILLSFWICSLMITASSSVYLSSYhssifvfLVLFLMIMLYC----SFSSLSLLSFYIFFEASLIPTLL 125
Cdd:CHL00011   78 WRLGIDGLSIGPILLTGFITTLATLAAWPVTRNSR-------LFYFLMLAMYSgqigLFSSRDLLLFFIMWELELIPVYL 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 126 LILGWGYQpERLQAGIYLIFYTLVASLPLLLVLFKV-----------YDCSFTLYFPLLLDFgsfyfLFYLFIILAFLIK 194
Cdd:CHL00011  151 LLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGMglygsneptlnFETLANQSYPVALEI-----LFYIGFLIAYAVK 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 195 MPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSL 273
Cdd:CHL00011  225 LPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKR 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 274 IAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSS 353
Cdd:CHL00011  305 IAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMA 384

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 2329675899 354 NMAAPPSLNLLGELSLLNSIISWSSLSFLTLMFLSFFSAV 393
Cdd:CHL00011  385 SLALPGMSGFVAELIVFFGIITSQKYLLMPKILITFVMAI 424
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
48-338 5.27e-23

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 101.32  E-value: 5.27e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  48 ISWFFGVDYFSFGLILLSFWICSLMITASSSvylSSYHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:PRK06473   71 LSYHLGVDGLSLPLLVLNSLLTLIAIYSSDE---SIQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLI 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 128 LGWGYQpERLQAGIYLIFYTLVASLPLL---LVLFKVYDCSFTLYFPLL---LDFGSfYFLFYLFIILAFLIKMPMFLVH 201
Cdd:PRK06473  148 AIWGGQ-RRGYAATKFLLYTAISGILILvsfLGLVWLSGASSFDYEPLRshtLPLST-QLLLLAPILVGFGIKIPLVPFH 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 202 LWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFIC-FRQVDLKSLIAYSSVA 280
Cdd:PRK06473  226 TWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCaIAQKDMKKMVAYSSIG 305

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2329675899 281 HMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMIN 338
Cdd:PRK06473  306 HMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
48-357 1.01e-17

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 85.15  E-value: 1.01e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  48 ISWFFGVDYFSFGLILLSfwiCSLMITASSSVYLSSYHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLI 127
Cdd:PRK07363   71 LSYSLGVDGLSLPLLVLN---SLLTWIAIYSIGENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLI 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 128 LGWGYQpERLQAGIYLIFYTLVASLPLLLVLFKV----------YDCSFTLYFPLLLDFgsfyfLFYLFIILAFLIKMPM 197
Cdd:PRK07363  148 AIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIvwlsgstsfdYDAISTQNLSLNTQL-----ILLTGLLLGFGIKIPL 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 198 FLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMkvisfLGL---SFNYFWLALGLSGGVVV---SFICFRQVDLK 271
Cdd:PRK07363  222 VPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFG-----LQLfpqTWSLVAPGLAIIGTISViygALSAIAQKDIK 296

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 272 SLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLS 351
Cdd:PRK07363  297 RMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPIRGLPLTSALLV 376


                  ....*.
gi 2329675899 352 SSNMAA 357
Cdd:PRK07363  377 LAGMAS 382
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-359 1.46e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 84.55  E-value: 1.46e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 113 YIFFEASLIPTLLLIlGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTLYFPLL---LDFGSFYFLFYLFIIL 189
Cdd:PRK08375  132 FVFLEIMSLSSYALV-AMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagaLAENPTVVTAFGFVLL 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 190 AFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI----SFLGLSFNYFWLALGLSGGVVVSFICF 265
Cdd:PRK08375  211 ALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVfggdFRFALGLGWLLAVLALLSMLVGSLAAL 290

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 266 RQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMAL 345
Cdd:PRK08375  291 GQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAA 370

                         250
                  ....*....|....
gi 2329675899 346 WWFLLSSSNMAAPP 359
Cdd:PRK08375  371 AFAVASLSLIGVPP 384
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 16-343 5.16e-17

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 82.66  E-value: 5.16e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  16 LIGNFWWLVHSLMFVVSFFFMLGV--YSYSDLNMISWFFGVDYFSFGLILLSFWICSLMItaSSSVYLSSYHSSIFVFLV 93
Cdd:MTH00062    3 FFSVGFFLGFLLLLLFCLLYSSGVgcCILVVNNVFNGLFIFDSLSFYLILLVLFLGLYSQ--VMFYNLLSGVSRFFLFLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  94 LFLMIMLYCSFSSLSLlsfYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTLYFPLL 173
Cdd:MTH00062   81 LIFSILCFCVNNSLLF---WFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDW 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 174 LDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISflgLSFNYFWLALG 253
Cdd:MTH00062  158 GSDDSVSLIVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIF---SGSFLGYLFLC 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 254 LSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLIN 333
Cdd:MTH00062  235 CLFSVFFLITACSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLL 314

                         330
                  ....*....|
gi 2329675899 334 KGMINLMPSM 343
Cdd:MTH00062  315 KSGINGSLVL 324
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 144-359 1.96e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 81.17  E-value: 1.96e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 144 IFYTLVASLPLLLVLFKVYDCSFTLYFPLLLDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVL 223
Cdd:PRK12667  186 FLYATFGTLNMADLSAKIRGLSFPLTGGLAGNPPLALGVALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLV 265

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 224 LKLGGYGIFRVMKVISFLGLSFNYFWLA-------LGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWG 296
Cdd:PRK12667  266 VNVGAYAIIRFLYTIFGISPSLIDFRAAlspiliiLGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLG 345

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2329675899 297 CMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK12667  346 LAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPP 408
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 186-352 1.28e-14

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 75.74  E-value: 1.28e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 186 FIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVIS-FLGLSF-NYFWLALGLSGGVVVSFI 263
Cdd:PRK06458  219 FLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDaAIGSDFpGRLLLIFGLLSVLVAAFF 298

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 264 CFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSM 343
Cdd:PRK06458  299 LLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLT 378


                  ....*....
gi 2329675899 344 AlWWFLLSS 352
Cdd:PRK06458  379 G-WGLMLGA 386
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 28-341 3.50e-13

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 71.57  E-value: 3.50e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  28 MFVVSFFFMLGVYSYSDLNMISWFFGVDYFSFGLILLS----FWICSLMITASSSVYLSSYH---SSIFVFLVLFLMIML 100
Cdd:PRK08668   32 NALPLLFLIKLYFTLKVGTGEKLTLFFGGFKLTFTLTHlswfFAMISLLVIFSVAFFMVSEKtknDAYFNMFALMSLAGV 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 101 YCSFSSLSLLSFYIFFEASLIPTLLLILgWGYQPERLQAGIYLIFyTLVASLPLLLVLFKVYDCSFTLYFPLLLDF---- 176
Cdd:PRK08668  112 LGVFLANDLLTLYIFWEIMTFSSFMMVP-MGKKESRKASLKYFVL-SAIGAYAMLYAIFLIYAKTGTFDFADISQGlind 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 177 --GSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGL----------- 243
Cdd:PRK08668  190 tsTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLPGTKLfsefgtyrgvp 269

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 244 SFNYFWLALGLSGGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYE 323
Cdd:PRK08668  270 LFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIY 349

                         330
                  ....*....|....*...
gi 2329675899 324 RLGSRSLLINKGMINLMP 341
Cdd:PRK08668  350 RTGTTKISEMGGLIEKMP 367
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-102 2.39e-12

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 63.31  E-value: 2.39e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899   1 MLKYLFMLVFMTPLCLIGNFWWL-----VHSLMFVVSFFFMLGVYSYSDLNMISWFFGVDYFSFGLILLSFWICSLMITA 75
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLwttstLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80

                          90       100
                  ....*....|....*....|....*....
gi 2329675899  76 SSSVYLSS--YHSSIFVFLVLFLMIMLYC 102
Cdd:pfam01059  81 SQKHLKSEpnNRQRTFIFLLILLQLFLIL 109
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-324 4.23e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 64.59  E-value: 4.23e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 113 YIFFEASLIPTLLLIlGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTLYFPLLLDFGSFYFLFylfIILAFL 192
Cdd:PRK07234  120 YVALEVLSIATFLLV-AYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATADPEAFAL---IALGLL 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 193 IKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYFWLALGLSGgvvvSFICFRQVDLKS 272
Cdd:PRK07234  196 VKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLG----VLFALLEKDLKR 271

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2329675899 273 LIAYSSVAHMSMVIGGlmtmnwwGCMGSLcLMIGHGLCSSGLFCLSNIIYER 324
Cdd:PRK07234  272 MLAFSTISQLGFILAA-------PLVGGL-YALAHGLVKSTLFLCAGALPSR 315
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 114-359 4.46e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 64.75  E-value: 4.46e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 114 IFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTLYFPLLLDFGSFYFLFYLFIILAFLI 193
Cdd:PRK08667  138 FFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVFLLLFLGFGI 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 194 KMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYFWLALGLSGGVVVSFICFRQVDLKSL 273
Cdd:PRK08667  218 KAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGL 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 274 IAYSSVAHMSMVIGGLMTMNWWGCMG--SLCLM---------IGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPS 342
Cdd:PRK08667  298 LAYSSIENIGIILMGIGLYVIFGVYGldTLALLalggalfhsLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPY 377

                         250
                  ....*....|....*..
gi 2329675899 343 MALWWFLLSSSNMAAPP 359
Cdd:PRK08667  378 TSALFLVGAVSIAALPP 394
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 178-327 4.99e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 64.39  E-value: 4.99e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 178 SFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI--SFLGLSFNYFWLALGLS 255
Cdd:PRK08676  203 SVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIF 282

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2329675899 256 GGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGS 327
Cdd:PRK08676  283 SIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRS 354
PRK12646 PRK12646
DUF4040 family protein;
80-359 2.74e-10

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 62.46  E-value: 2.74e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  80 YLSSYHSSI---FVFLVLFLMIMLyCSFSSLSLLSFYIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLL 156
Cdd:PRK12646  101 YLSSRKDNLprfYFYLTLFMFSMI-GIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLV 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 157 VLFKVYDCSFTLYFPLLL-------DFGSFYFLFYLFIILAFlIKMPMFLVHLWLPKAhVEAPISGSMIL-AGVLLKLGg 228
Cdd:PRK12646  180 GFIMLYIMTGTNNITEILgqadhikNHGLFIPMIFMFLLGAF-TKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAG- 256

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 229 ygIFRVMKVISFLGLSFNYFWLA--LGLSGGVVVSFICFRQVDLKSLIAYSSVAH----MSMV-IGGLMTMNWWGCMGSL 301
Cdd:PRK12646  257 --IFLLFRFTPLLGLSNMYIYIVtfVGLITMLFGSITALKQWDLKGILAYSTISQlgmiMAMVgIGGGYAQHQQDAIASI 334

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2329675899 302 CLMI---------GHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALwWFLLSSSNMAAPP 359
Cdd:PRK12646  335 YVFVlfaalfhlmNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNL-VMTIAALSMAGVP 400
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 185-395 9.72e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 60.52  E-value: 9.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 185 LFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI-----SFLGLSFNYFWLALGLSGGVV 259
Cdd:PRK12662  213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVfkanfVFTTLPFNNVFMILAALAIVF 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 260 VSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINL 339
Cdd:PRK12662  293 GSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKS 372

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2329675899 340 MPSMALWWFLLSSSNMAAPPSLNLLGELSLLNSII-SWSSLSFLTLMFLSFFSAVYT 395
Cdd:PRK12662  373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIkSNAWIGLVVLLVGSGLSVIYV 429
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-349 4.01e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 58.44  E-value: 4.01e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 113 YIFFEASLIPTLLLiLGWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTLYFPLL------LDFGSFYFLFYLF 186
Cdd:PRK12665  137 YVGFEILLVASYVL-LTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLavrldeLPSGTRTALFAVL 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 187 IIlAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVIsFLGLSFNYFWLALGLSGGVVVSFICFR 266
Cdd:PRK12665  216 LV-AFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLL-FPGGGLDTLLMVVALLTMVVGILGAIA 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 267 QVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALW 346
Cdd:PRK12665  294 QSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVL 373


                  ...
gi 2329675899 347 WFL 349
Cdd:PRK12665  374 FFV 376
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 187-359 1.38e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 53.62  E-value: 1.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 187 IILAFLIKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYFWL--ALGLSGGVVVSFIC 264
Cdd:PRK08377  212 LIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLviIMATLTVFFAELSA 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 265 FRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMA 344
Cdd:PRK08377  292 LRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTA 371

                         170
                  ....*....|....*
gi 2329675899 345 LWWFLLSSSNMAAPP 359
Cdd:PRK08377  372 LALTIGALSTVGIPL 386
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 188-359 1.83e-07

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 53.35  E-value: 1.83e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 188 ILAFL---IKMPMFLVHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVmkVISFLG---LSFNYFWLALGLSG---GV 258
Cdd:PRK06521  214 LLALFgfgAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRV--VFDLLGapgWWWGVLVLALGAISavlGV 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 259 VVSFIcfrQVDLKSLIAYSSVAHM---SMVIG--------GLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGS 327
Cdd:PRK06521  292 LYALA---EHDLKRLLAYSTIENIgiiFVGLGlamvfiayGMPLLAALALTAALYHLLNHALFKSLLFLGAGAVLHATGT 368

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2329675899 328 RSLLINKGMINLMPSMAlWWFLLSSSNMAAPP 359
Cdd:PRK06521  369 RDMEKLGGLIRRMPWTA-WAFLIGCLAISALP 399
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 113-341 3.90e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 48.94  E-value: 3.90e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 113 YIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYTLVASLPLLL---VLFKVYDCSFTLYFPLLLDFGSFYF--LFYLFI 187
Cdd:PRK08376  147 FVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLgiaLLYGQYGTLNMAYLAVKMSENPTVVakIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 188 ILAFLIKMPMFLVHLWLPKAHVEAPISGSMILagVLLKLGG-YGIFRVmkvisflglSFNYFWLALGLS--GGVVVSFIC 264
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARV---------LFSIYGPAINLAtvGWVIIILGC 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 265 FR----------QVDLKSLIAYSSVAH---------MSMVIGGLMTMNWWGCM---GSLCLMIGHGLCSSGLFCLSNIIY 322
Cdd:PRK08376  296 LTmfvgvamavvQKDVKRLLAYHSVSQigymllglgVGLAALGDPAMASYGEIalaGGIYHIVNHALYKALLFLTAGAVI 375

                         250
                  ....*....|....*....
gi 2329675899 323 ERLGSRSLLINKGMINLMP 341
Cdd:PRK08376  376 YETGTRNLNELGGLARTMP 394
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 61-359 4.84e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 48.66  E-value: 4.84e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  61 LILLSF-WICSLMITASSSVYLSSYHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLIlGWGYQPERLQA 139
Cdd:PRK06589   89 LLLIGFlWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLI-GHTRNNISLSG 167

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 140 GI-YLIFYTLVASLPLLLVLFKVYDCSFTLYFPLLLDFGSFYFLFYLFIILAFLIKMPMFLVHLWLPKAHVEAPISGSMI 218
Cdd:PRK06589  168 GYkYLKILMISALLLFLPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALL 247

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 219 LAGVLLKLGGYGIFRVMKVISFLGL------SFNYFWLALGLSgGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTM 292
Cdd:PRK06589  248 HAVIVVKTGLFCIYKILLYIFGLSYlqrifaEFNWLIFIPIVS-IFYSSLKALKTDNIKKILAYSTISQLSLALLSAFIL 326

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2329675899 293 NWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK06589  327 TPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPI 393
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 52-359 2.87e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 43.01  E-value: 2.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  52 FGVDYFSFGLILLSFWICSLMITASSSVYLSSYHSSIFVFLVLFLMIMLYCSFSSLSLLSFYIFFEASLIPTLLLILGWG 131
Cdd:PRK07691   73 FVADMFAALLVLTSSIITFLVILYSFQTIGIERERYYYYPSVLFMLAGVNGAFLTGDIFNLFVFFEVMLMASYVLIVIGG 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 132 YQPErLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTLYFPLLL---------DFGSFYFLFYLFIILaFLIKMPMFLVHL 202
Cdd:PRK07691  153 TKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMADISvkiaelsagQTGLITVVAILFLFV-FATKAGLFPLYF 230

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVISFLGLSFNYfwLALGLSGGVVVSFICF---RQVDLKSLIAYSSV 279
Cdd:PRK07691  231 WLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFTH--YLILILALLTIIFGVIgavAYFDIKKIIIYNIM 308

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 280 AHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMAlWWFLLSSSNMAAPP 359
Cdd:PRK07691  309 IAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLG-WMFFIAALSLAGIP 387
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 52-359 8.27e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.83  E-value: 8.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899  52 FGVDyFSFGLILLSFWICsLMIT-------ASSSVYLSSYH--SSIFVFLVLFLMIMLyCSFSSLSLLSFYIFFEASLIP 122
Cdd:PRK12647   54 LGVN-LSFLLDGLSLTFA-LLITgigtlivLYAGGYLKGHPdlGRFYSYILLFMASML-GLVLSDNLITLFVFWELTSIT 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 123 TLLLIlgwGYQPER-------LQAgiylIFYTLVASLPLLLVLFKVYDCSFTLYFPLLLDFG------SFYFLFYLFIIL 189
Cdd:PRK12647  131 SFLLI---GFNHEReaarraaLQA----LLVTGGGGLALLAGLILLGNVTGTYSLSELLASGdvirehPLYLAILLLVLG 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 190 AFLIKMPMFLVHLWLPKAhVEAPI-------SGSMILAGVLLklggygifrVMKVISFLGLSFNYFWLaLGLSGG---VV 259
Cdd:PRK12647  204 GAFTKSAQFPFHFWLPNA-MEAPTpvsaylhSATMVKAGIYL---------LARLNPVLGGTPLWQTI-LPLFGGltmLT 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 260 VSFICFRQVDLKSLIAYSSVahmsMVIGGLMTMNWWGC----MGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKG 335
Cdd:PRK12647  273 GALLAVRQTDLKLILAYSTV----SALGTLVMLLGLGSelaiKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGG 348

                         330       340
                  ....*....|....*....|....
gi 2329675899 336 MINLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK12647  349 LRRAMPITAAAALLAALSMAGLPP 372
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 200-359 1.69e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 40.58  E-value: 1.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 200 VHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFrvmkVISFLGLSFNYFWLALGLSGGVVVSFI----CFRQVDLKSLIA 275
Cdd:PRK08042  199 LHGWVPQAHANASAPAAALFSTVVMKIGLLGIL----TLSLLGGNAPLWWGVALLVLGMITAFVgglyALMEHNIQRLLA 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 276 YSSVAHMSMVIGGL-----------MTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPSMA 344
Cdd:PRK08042  275 YHTLENIGIILLGLgagvtgialeqPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVIS 354

                         170
                  ....*....|....*
gi 2329675899 345 LwWFLLSSSNMAAPP 359
Cdd:PRK08042  355 I-AMLVGLMAMAALP 368
PRK12650 PRK12650
DUF4040 family protein;
188-359 1.69e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.80  E-value: 1.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 188 ILAFLI------KMPMFLVHLWLPKAHVEA-PIS-----GSMILAGVLLKLGGYGIFRVMKVisflglsFNYFWLALGLS 255
Cdd:PRK12650  209 VVAVLIavaaftKSAQFPFHFWLPEAMAAItPVSaflhaAAVVKAGIYLLLRFSPVFHDVAV-------WNWLLIIVGMI 281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 256 GGVVVSFICFRQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKG 335
Cdd:PRK12650  282 TALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGS 361

                         170       180
                  ....*....|....*....|....
gi 2329675899 336 MINLMPsMALWWFLLSSSNMAAPP 359
Cdd:PRK12650  362 LWRRMP-FTFVSVTIAALSMAAVP 384
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 113-292 3.21e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 39.81  E-value: 3.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 113 YIFFEASLIPTLLLILGWGYQPERLQAGIYLIFYT------LVASLPLLLVLFKVYDCSFTLYFPLLLDFGSFYFLFYLF 186
Cdd:PRK12649  137 FIFWELTSITSFMLIGYWRHRPESVYGATKSLLITaggglfMFAGFLLLHVITGTYDIATILQDSELIENIKGHPLFLIT 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 187 IILAFL---IKMPMFLVHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKVisflgLSFNYFWLAL----GLSGGV 258
Cdd:PRK12649  217 LILIFIgaaAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHPI-----FSGTEAWFILvsgtGMITMV 290

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2329675899 259 VVSFICFRQVDLKSLIAYSSVAHMSMviggLMTM 292
Cdd:PRK12649  291 LAGFLAFRQTDIKAILAYSTISQLAY----LMTM 320
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 182-359 3.27e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 39.57  E-value: 3.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 182 LFYLFIILAFLIKMPMFLVHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVMKVISFLGLSFNYFWLALGLSGGVVV 260
Cdd:PRK06525  208 LVFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYG 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 261 SFICFRQVDLKSLIAYSSVAHMSMVIGGLMTM---NWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMI 337
Cdd:PRK06525  287 FLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVL 366

                         170       180
                  ....*....|....*....|..
gi 2329675899 338 NLMPSMALWWFLLSSSNMAAPP 359
Cdd:PRK06525  367 KKLPLVGVGFCVAALAITGVPP 388
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
113-359 4.30e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 39.16  E-value: 4.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 113 YIFFEASLIPTLLLILgWGYQPERLQAGIYLIFYTLVASLPLLLVLFKVYDCSFTLYFPLL------LDFGSFYFLFYLF 186
Cdd:PRK12663  134 YVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndMGDTATLTTIALL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 187 IILAFLIKMPMFLVHlWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMKVI----SFLGLSFNYFWLALGLSGGVVVSF 262
Cdd:PRK12663  213 FLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLfpqeRELLHPLLATMAAITMVIGALGAL 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329675899 263 IcfrQVDLKSLIAYSSVAHMSMVIGGLMTMNWWGCMGSLCLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGMINLMPS 342
Cdd:PRK12663  292 A---YKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPL 368

                         250
                  ....*....|....*..
gi 2329675899 343 MALWWFLLSSSNMAAPP 359
Cdd:PRK12663  369 FGALFLILIFAIGGLPP 385
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH