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Conserved domains on  [gi|2411355187|gb|WAM61699|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Ocellarnaca emeiensis]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-172 1.56e-36

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 123.76  E-value: 1.56e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2411355187   1 MLTLMMMNIFSTIIFTQLNHPLTMTLIIVFQTLLICTFTGFISQSFWFSYILFLVFLGGMLVLFIYMTSLASNEMFSMPV 80
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2411355187  81 KTIFITFLiinsiiiiswlidTSFTNMFSMNLDMIPNNSNYSNYWSETSLSLTKLYNQPTSLNTLMLVLYLFLTLIAIVK 160
Cdd:MTH00166   81 KLLILFLL-------------MLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVK 147

                         170
                  ....*....|..
gi 2411355187 161 ITNIFYGPLRHM 172
Cdd:MTH00166  148 ITNIFKGPLRSK 159
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-172 1.56e-36

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 123.76  E-value: 1.56e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2411355187   1 MLTLMMMNIFSTIIFTQLNHPLTMTLIIVFQTLLICTFTGFISQSFWFSYILFLVFLGGMLVLFIYMTSLASNEMFSMPV 80
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2411355187  81 KTIFITFLiinsiiiiswlidTSFTNMFSMNLDMIPNNSNYSNYWSETSLSLTKLYNQPTSLNTLMLVLYLFLTLIAIVK 160
Cdd:MTH00166   81 KLLILFLL-------------MLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVK 147

                         170
                  ....*....|..
gi 2411355187 161 ITNIFYGPLRHM 172
Cdd:MTH00166  148 ITNIFKGPLRSK 159
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-172 1.56e-36

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 123.76  E-value: 1.56e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2411355187   1 MLTLMMMNIFSTIIFTQLNHPLTMTLIIVFQTLLICTFTGFISQSFWFSYILFLVFLGGMLVLFIYMTSLASNEMFSMPV 80
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2411355187  81 KTIFITFLiinsiiiiswlidTSFTNMFSMNLDMIPNNSNYSNYWSETSLSLTKLYNQPTSLNTLMLVLYLFLTLIAIVK 160
Cdd:MTH00166   81 KLLILFLL-------------MLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVK 147

                         170
                  ....*....|..
gi 2411355187 161 ITNIFYGPLRHM 172
Cdd:MTH00166  148 ITNIFKGPLRSK 159
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-171 1.67e-09

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 53.86  E-value: 1.67e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2411355187   1 MLTLMMMNIFSTIIFTQLNHPLTMTLIIVFQTLLICTFTGFISQSfWFSYILFLVFLGGMLVLFIYMTSLASNEMFSMPV 80
Cdd:MTH00212    3 LSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMESNS-WYGYILFLIYIGGLLVLFGYMVALSPNEHLFFKK 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2411355187  81 KT--IFITFLIINSIIIISWLIDTSFTNMFSMNLDmipnnsnysnywsetsLSLTKLYNQPTSLNTLMLVLYLFLTLIAI 158
Cdd:MTH00212   82 YFkgFGMILISLNLYLLLMTLGSSNFSPMLNLKLE----------------LNVSKILSNNNIPILLFLGLILLIALLMV 145

                         170
                  ....*....|...
gi 2411355187 159 VKITNIFYGPLRH 171
Cdd:MTH00212  146 VKICQYYKGPLRP 158
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-170 1.14e-07

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 48.73  E-value: 1.14e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2411355187   1 MLTLMMMNIFSTIIFTQLNHPLTMTLIIVFQTLLICTFTGFISqSFWFSYILFLVFLGGMLVLFIYMTSLASNEMFSMPV 80
Cdd:MTH00152    3 LMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTL-SSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSNF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2411355187  81 KTIFITFLIINSIIIISWlidtsftnMFSMNLDMIPNNSNYSNYWSETSLSLTKLYNQPTSLNTLMLVLYLFLTLIAIVK 160
Cdd:MTH00152   82 KFVFFSLTLFGFLGLFFF--------FLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVK 153

                         170
                  ....*....|
gi 2411355187 161 ITNIFYGPLR 170
Cdd:MTH00152  154 ICYYEEGSLR 163
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 45-72 6.67e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 38.20  E-value: 6.67e-04
                          10        20
                  ....*....|....*....|....*...
gi 2411355187  45 SFwFSYILFLVFLGGMLVLFIYMTSLAS 72
Cdd:MTH00138   49 SF-LSLVLFLIYLGGMLVVFAYSAALAA 75
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 49-71 7.83e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 35.21  E-value: 7.83e-03
                          10        20
                  ....*....|....*....|...
gi 2411355187  49 SYILFLVFLGGMLVLFIYMTSLA 71
Cdd:MTH00065   52 SLVLFLIYLGGMLVVFAYSAALA 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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