|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-153 |
8.99e-99 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 288.72 E-value: 8.99e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTDK 80
Cdd:MTH00119 139 MSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDK 218
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2430289442 81 IPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00119 219 IPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGG 291
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-153 |
9.35e-50 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 163.81 E-value: 9.35e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFH-FLLPFTIIGLTIVHLLFLHETGSNNPTG----LN 75
Cdd:COG1290 149 LSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKT 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 76 SNTDKIPFHPYFSYKDLLGLILMLTLLLTLTLFFPNllGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIP--NKLGG 153
Cdd:COG1290 229 EKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGG 306
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-69 |
9.61e-30 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 107.07 E-value: 9.61e-30
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSN 69
Cdd:cd00284 132 MSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-67 |
2.25e-28 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 103.23 E-value: 2.25e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETG 67
Cdd:pfam00033 123 MSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
121-153 |
1.17e-05 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 42.86 E-value: 1.17e-05
10 20 30
....*....|....*....|....*....|...
gi 2430289442 121 PANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLG 97
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-153 |
8.99e-99 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 288.72 E-value: 8.99e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTDK 80
Cdd:MTH00119 139 MSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDK 218
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2430289442 81 IPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00119 219 IPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGG 291
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-153 |
2.40e-97 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 285.39 E-value: 2.40e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTDK 80
Cdd:MTH00131 138 MSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADK 217
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2430289442 81 IPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00131 218 ISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGG 290
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-153 |
2.76e-95 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 278.97 E-value: 2.76e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTDK 80
Cdd:MTH00156 128 MSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDK 207
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2430289442 81 IPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00156 208 IPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGG 280
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-153 |
4.96e-95 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 279.26 E-value: 4.96e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTDK 80
Cdd:MTH00074 139 MSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDK 218
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2430289442 81 IPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00074 219 VPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGG 291
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-153 |
4.25e-93 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 273.71 E-value: 4.25e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTDK 80
Cdd:MTH00191 135 MSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDK 214
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2430289442 81 IPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00191 215 IPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGG 287
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-153 |
8.57e-93 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 273.44 E-value: 8.57e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTDK 80
Cdd:MTH00100 138 MSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDK 217
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2430289442 81 IPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00100 218 IPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGG 290
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-153 |
8.24e-87 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 258.30 E-value: 8.24e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTDK 80
Cdd:MTH00145 139 MSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDK 218
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2430289442 81 IPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00145 219 VPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGG 291
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-153 |
1.97e-81 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 244.62 E-value: 1.97e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTDK 80
Cdd:MTH00034 138 MSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDK 217
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2430289442 81 IPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00034 218 VPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGG 290
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-153 |
2.48e-81 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 244.20 E-value: 2.48e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTDK 80
Cdd:MTH00016 139 MSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDK 218
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2430289442 81 IPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00016 219 VPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGG 291
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-153 |
1.09e-70 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 217.26 E-value: 1.09e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTDK 80
Cdd:MTH00022 137 MSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDK 216
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2430289442 81 IPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00022 217 VSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGG 289
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-153 |
1.22e-70 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 217.10 E-value: 1.22e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTDK 80
Cdd:MTH00224 139 MSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSAR 218
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2430289442 81 IPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00224 219 IPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGG 291
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-153 |
5.74e-70 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 215.34 E-value: 5.74e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTDK 80
Cdd:MTH00053 139 MSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDK 218
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2430289442 81 IPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00053 219 IPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGG 291
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-153 |
4.17e-55 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 176.67 E-value: 4.17e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTDK 80
Cdd:MTH00086 127 MSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDK 206
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2430289442 81 IPFHPYFSYKDlLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00086 207 ICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLG 278
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-153 |
8.67e-51 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 166.27 E-value: 8.67e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTDK 80
Cdd:MTH00033 135 MSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDR 214
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2430289442 81 IPFHPYFSYKDLLGLILMLTLLLTLTL--FFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00033 215 TAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGG 289
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-153 |
9.35e-50 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 163.81 E-value: 9.35e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFH-FLLPFTIIGLTIVHLLFLHETGSNNPTG----LN 75
Cdd:COG1290 149 LSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKT 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 76 SNTDKIPFHPYFSYKDLLGLILMLTLLLTLTLFFPNllGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIP--NKLGG 153
Cdd:COG1290 229 EKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGG 306
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-153 |
1.11e-43 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 147.05 E-value: 1.11e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSNNPTGL-NSNTD 79
Cdd:MTH00046 129 MSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSD 208
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2430289442 80 KIPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:MTH00046 209 VVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG 282
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-69 |
9.61e-30 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 107.07 E-value: 9.61e-30
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETGSN 69
Cdd:cd00284 132 MSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-67 |
2.25e-28 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 103.23 E-value: 2.25e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHFLLPFTIIGLTIVHLLFLHETG 67
Cdd:pfam00033 123 MSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
70-153 |
6.07e-28 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 100.80 E-value: 6.07e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 70 NPTGLNSNTDKIPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDPDNFTPANLLATPPHIKPEWYFLFAYAILRSIPN 149
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
....
gi 2430289442 150 KLGG 153
Cdd:cd00290 81 KLLG 84
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-116 |
6.71e-27 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 98.85 E-value: 6.71e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 1 MSFWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFHF-LLPFTIIGLTIVHLLFLHETGSNNPTGLNSNTD 79
Cdd:pfam13631 53 LSGTGLRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVV 132
|
90 100 110
....*....|....*....|....*....|....*..
gi 2430289442 80 KIPFHPYFSYKDLLGLILMLTLLLTLTLFFPNLLGDP 116
Cdd:pfam13631 133 GVPFWPVFAVKMLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
121-153 |
6.18e-16 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 68.66 E-value: 6.18e-16
10 20 30
....*....|....*....|....*....|...
gi 2430289442 121 PANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGG 33
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
3-71 |
1.32e-08 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 51.64 E-value: 1.32e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 3 FWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFH-FLLPFTIIGLTIVHLLFLHETGSNNP 71
Cdd:PRK03735 153 YFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
|
|
| petB |
CHL00070 |
cytochrome b6 |
3-71 |
2.96e-08 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 50.49 E-value: 2.96e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2430289442 3 FWGATVITNLLSTIPYMGSTLVQWIWGGFSVNNATLTRFFTFH-FLLPFTIIGLTIVHLLFLHETGSNNP 71
Cdd:CHL00070 145 YWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGP 214
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
121-153 |
1.36e-06 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 45.55 E-value: 1.36e-06
10 20 30
....*....|....*....|....*....|...
gi 2430289442 121 PANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:COG5679 66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLG 98
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
121-153 |
4.24e-06 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 43.84 E-value: 4.24e-06
10 20 30
....*....|....*....|....*....|...
gi 2430289442 121 PANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:CHL00058 65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLG 97
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
121-153 |
1.17e-05 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 42.86 E-value: 1.17e-05
10 20 30
....*....|....*....|....*....|...
gi 2430289442 121 PANLLATPPHIKPEWYFLFAYAILRSIPNKLGG 153
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLG 97
|
|
|