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Conserved domains on  [gi|2438000133|gb|WCH07116|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Poecilimon ebneri]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-304 6.42e-79

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 243.19  E-value: 6.42e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLNNMSlliNQNLFLTLI 80
Cdd:MTH00160   17 GTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLML---FNNISSMLI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  81 SSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISvNTFITLVIVSSIIIGSLGGLNQTSLRKLMA 160
Cdd:MTH00160   94 NSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAIIGAIGGLNQTSLRKILA 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 161 YSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQNFLI-NLNPSLKFCLFFLLLSLGGLPPFTGF 239
Cdd:MTH00160  173 YSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSnNKSKKIKFLLFLNLLSLGGLPPFLGF 252

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2438000133 240 LPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSYQEVKWIEIMPYNLTTYSTLM 304
Cdd:MTH00160  253 LPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNF 317
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-304 6.42e-79

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 243.19  E-value: 6.42e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLNNMSlliNQNLFLTLI 80
Cdd:MTH00160   17 GTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLML---FNNISSMLI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  81 SSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISvNTFITLVIVSSIIIGSLGGLNQTSLRKLMA 160
Cdd:MTH00160   94 NSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAIIGAIGGLNQTSLRKILA 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 161 YSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQNFLI-NLNPSLKFCLFFLLLSLGGLPPFTGF 239
Cdd:MTH00160  173 YSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSnNKSKKIKFLLFLNLLSLGGLPPFLGF 252

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2438000133 240 LPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSYQEVKWIEIMPYNLTTYSTLM 304
Cdd:MTH00160  253 LPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNF 317
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 8-265 2.62e-32

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 121.27  E-value: 2.62e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   8 SVSWFGAWMGLEINLLSFIPLMT-NTKNTLSTEASLKYFLIQALASSILLFSVVLMH--------------LNNMSLLIN 72
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYnytgtlsfdelskaLTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  73 QNLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLIL-MTWQKIAPFMLI-------SYVISVNTFITLVIVSSIII 144
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 145 GSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENM----WLLYFTIYTFLSTSIIFLFQSFQL------YHINQNFLIN 214
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSVIYrrvhtrNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2438000133 215 LNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITT 265
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-281 3.11e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 99.04  E-value: 3.11e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPL-MTNTKNTLSTEASLKYFLIQALASSILLFSVVL-------MHLNNMSLLIN 72
Cdd:COG1007   114 GMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLlygatgsLNLAGIAAALA 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  73 QNLFLTLISSSLLL--------KMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPF---------MLISYVISVNTFIT 135
Cdd:COG1007   194 AGGANSPLLLLGLVlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFaallrllveAFPGLAADWQLLLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 136 LVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENMW----LLYFTIYTFLSTSIIFLFQSF-QLYHINQN 210
Cdd:COG1007   274 VLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaaLFYLLAYLFMNLGAFAVILLLsRKGGEAEE 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2438000133 211 F-----LINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:COG1007   354 IedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYF 429
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-304 4.13e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.09  E-value: 4.13e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMT-NTKNTLSTEASLKYFLIQALASSILLFSVVLM-------HLNNMSLLIN 72
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslNFEDLLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  73 QNLFLTLISSS--------LLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPF-------MLISYVISVNTFITLV 137
Cdd:TIGR01770 194 NGMLNISLLLLgivlilvgLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFavflrlfLYILFGFSEAWQIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 138 IVS--SIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENM----WLLYFTIYTFLSTSIIFLFQSFQLYHINQNF 211
Cdd:TIGR01770 274 IIAflSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYKDEWIE 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 212 -------LINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSY 284
Cdd:TIGR01770 354 yisdfagLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYFDKP 433

                         330       340
                  ....*....|....*....|
gi 2438000133 285 QevKWIEIMPYNLTTYSTLM 304
Cdd:TIGR01770 434 E--RRIPSNPQSKAQSLLLS 451
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-304 6.42e-79

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 243.19  E-value: 6.42e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLNNMSlliNQNLFLTLI 80
Cdd:MTH00160   17 GTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLML---FNNISSMLI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  81 SSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISvNTFITLVIVSSIIIGSLGGLNQTSLRKLMA 160
Cdd:MTH00160   94 NSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAIIGAIGGLNQTSLRKILA 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 161 YSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQNFLI-NLNPSLKFCLFFLLLSLGGLPPFTGF 239
Cdd:MTH00160  173 YSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSnNKSKKIKFLLFLNLLSLGGLPPFLGF 252

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2438000133 240 LPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSYQEVKWIEIMPYNLTTYSTLM 304
Cdd:MTH00160  253 LPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNF 317
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-312 6.23e-61

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 197.38  E-value: 6.23e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVV--LMHLNNMSLL-INQNLFL 77
Cdd:MTH00105   16 GTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIinLMYSGQWTITkLTNPTAS 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  78 TLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFML---ISYVISVNTFITLVIvSSIIIGSLGGLNQTS 154
Cdd:MTH00105   96 TLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSIlyqISPSINPNLLLTLAI-LSILIGGWGGLNQTQ 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 155 LRKLMAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQ-NFLINLNPSLKFCLFFLLLSLGGL 233
Cdd:MTH00105  175 LRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSlSHTWNKTPLMTSLILLTLLSLGGL 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 234 PPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL--FSYQEVKWIEIMPYNLTTYSTLMTLTTISS 311
Cdd:MTH00105  255 PPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLtmFPSTNNMKMKWQFENTKPMTLLPTLIILST 334


                  .
gi 2438000133 312 L 312
Cdd:MTH00105  335 M 335
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-312 7.02e-60

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 194.75  E-value: 7.02e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVL-------MHLNNMSllinQ 73
Cdd:MTH00070   16 GTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInawftgeWTIMNMQ----T 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  74 NLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFML---ISYVISVNTFITLVIVsSIIIGSLGGL 150
Cdd:MTH00070   92 PLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALliqISHLLNSNLLIIMGLL-STLIGGWGGL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 151 NQTSLRKLMAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQNFLINL-NPSLKFCLFFLLLS 229
Cdd:MTH00070  171 NQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSkNPTLTSMMMLTLLS 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 230 LGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSYQEVKWIEIMPYNLTTYSTLMTLTTI 309
Cdd:MTH00070  251 LGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTII 330


                  ...
gi 2438000133 310 SSL 312
Cdd:MTH00070  331 LSL 333
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-311 2.68e-59

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 193.22  E-value: 2.68e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLNNMSLLINQNLFLTLI 80
Cdd:MTH00041   16 GTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSS 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  81 SSSLL---LKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVI-SVNTFITLVI-VSSIIIGSLGGLNQTSL 155
Cdd:MTH00041   96 IIITLalaLKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISnLLNSNILILCgILSVLVGGWGGLNQTQT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 156 RKLMAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHI-NQNFLINLNPSLKFCLFFLLLSLGGLP 234
Cdd:MTH00041  176 RKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLsHLNKLSQLNPISAFLFILSILSLGGLP 255

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2438000133 235 PFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSYQEVKWIEIMPYNLTTYSTLMTLTTISS 311
Cdd:MTH00041  256 PLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSILS 332
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-277 1.90e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 191.19  E-value: 1.90e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLNNMSLLINQ---NLFL 77
Cdd:MTH00112   16 GTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQltnPTSC 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  78 TLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLIsYVISVN---TFITLVIVSSIIIGSLGGLNQTS 154
Cdd:MTH00112   96 TLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLL-LMTSNSlnpTLLLTLAILSTLIGGWGGLNQTQ 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 155 LRKLMAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQNFLI-NLNPSLKFCLFFLLLSLGGL 233
Cdd:MTH00112  175 LRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSwTKSPTLNTTLMLTLLSLAGL 254

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 2438000133 234 PPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTF 277
Cdd:MTH00112  255 PPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTY 298
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-288 1.41e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 185.86  E-value: 1.41e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLNNMSLLInqnlfLTLI 80
Cdd:MTH00144   16 GTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS-----MSLL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  81 SSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISVNTFITLVIVSSI---IIGSLGGLNQTSLRK 157
Cdd:MTH00144   91 LLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVlsaLVGSIGGLNQTQVRA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 158 LMAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQNFLINLNPSLKFCLFFLLLSLGGLPPFT 237
Cdd:MTH00144  171 LLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLLLSLGGLPPFL 250

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2438000133 238 GFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSYQEVK 288
Cdd:MTH00144  251 GFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKK 301
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-281 1.38e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 181.16  E-value: 1.38e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVL-------MHLNNMSllinQ 73
Cdd:MTH00135   16 GTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTnawltgqWDIQQMS----H 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  74 NLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISVN-TFITLVIVSSIIIGSLGGLNQ 152
Cdd:MTH00135   92 PLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNpTLLITLGLTSTLVGGWGGLNQ 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 153 TSLRKLMAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINqnfliNL------NPSLKFCLFFL 226
Cdd:MTH00135  172 TQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKIN-----TLatswtkAPALTALTPLI 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2438000133 227 LLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:MTH00135  247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTL 301
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-283 5.30e-51

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 171.50  E-value: 5.30e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHlnnMSLLINQNLFLTLI 80
Cdd:MTH00011   18 GTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMW---SFPSLLKNITALML 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  81 SSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISVN--TFITLVIVSSIIIGSLGGLNQTSLRKL 158
Cdd:MTH00011   95 LVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNilPMMTSMAAMSALAGGLGGMNQTQLRPL 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 159 MAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQNFLI-NLNPSLKFCLFFLLLSLGGLPPFT 237
Cdd:MTH00011  175 LAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKIsSMSQTTSMSLFIMLLSLGGLPPFT 254

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 2438000133 238 GFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFS 283
Cdd:MTH00011  255 GFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLS 300
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-283 1.64e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 170.53  E-value: 1.64e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLNNMSLLINQ---NLFL 77
Cdd:MTH00200   16 GTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEmlgPLSE 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  78 TLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISV--NTFITLVIVSSIIIGSLGGLNQTSL 155
Cdd:MTH00200   96 TLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPAlnSNILLLLGLLSVLVGGWGGLNQTQL 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 156 RKLMAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQ-NFLINLNPSLKFCLFFLLLSLGGLP 234
Cdd:MTH00200  176 RKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSlSSSKTKNPILSMLLGLTLLSLGGLP 255

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 2438000133 235 PFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFS 283
Cdd:MTH00200  256 PLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTL 304
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-288 2.47e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 164.07  E-value: 2.47e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLNNMSLLinqnLFLTLI 80
Cdd:MTH00197   10 GVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSL----LSVVLV 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  81 SSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISVNTFITLVIVSSIIIGSLGGLNQTSLRKLMA 160
Cdd:MTH00197   86 ILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLA 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 161 YSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQ-NFLINLNPSLKFCLFFLLLSLGGLPPFTGF 239
Cdd:MTH00197  166 YSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQqYSNPESMSSNLVFLGLSFLSLGGLPPLSGF 245

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 2438000133 240 LPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSYQEVK 288
Cdd:MTH00197  246 FLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMIN 294
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 8-265 2.62e-32

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 121.27  E-value: 2.62e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   8 SVSWFGAWMGLEINLLSFIPLMT-NTKNTLSTEASLKYFLIQALASSILLFSVVLMH--------------LNNMSLLIN 72
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYnytgtlsfdelskaLTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  73 QNLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLIL-MTWQKIAPFMLI-------SYVISVNTFITLVIVSSIII 144
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 145 GSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENM----WLLYFTIYTFLSTSIIFLFQSFQL------YHINQNFLIN 214
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSVIYrrvhtrNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2438000133 215 LNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITT 265
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 1-275 2.30e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 105.10  E-value: 2.30e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTL-STEASLKYFLIQALASSILLFSVVLMH-------LNNMSLLIN 72
Cdd:MTH00199  109 GSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAySTEAGLKYFVLGAVSSGLFLFGCALLYgltgetsIQGINSILT 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  73 QNLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISVNTFITLVIVSSIIIGSLGGLNQ 152
Cdd:MTH00199  189 GDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGALNQ 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 153 TSLRKLMAYSSINHLGWMVAALTAGEN----MWLLYFTIYTFLSTSIIFLFQSFQLyhiNQNFLINL------NPSLKFC 222
Cdd:MTH00199  269 TKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSICSFSIILSLKL---TKGLIVEVsglsrkNPVIALT 345

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2438000133 223 LFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRL 275
Cdd:MTH00199  346 LALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-275 3.04e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 100.88  E-value: 3.04e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTL-STEASLKYFLIQALASSILLFSVVLM-------HLNNMSLLIN 72
Cdd:MTH00196    5 GILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGySAEAGLKYFVLGALSSGLFLFGCALLcgttgglHLSYINLVLN 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  73 QNLFLTLISSSL---------LLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISVNTFITLVIVSSII 143
Cdd:MTH00196   85 SGQSFSSVSVPIgylliivalLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSLF 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 144 IGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGE----NMWLLYFTIYTFLStsiIFLFQSFQLYHINQNFLINL---- 215
Cdd:MTH00196  165 VGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMS---ICVFSIILALNVYKNLIIEFsgls 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2438000133 216 --NPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRL 275
Cdd:MTH00196  242 rrLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-281 2.54e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 99.51  E-value: 2.54e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEI-NLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVL-------MHLNNMSLLIN 72
Cdd:PRK05777  115 GMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLlygatgsLSFAGIAKALA 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  73 QNLFLTLISSS--------LLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLI---------SYVISVNTFIT 135
Cdd:PRK05777  195 DGSGNSLLLLFglvfllvgLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafgGLSEDWQQVLA 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 136 LVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENM----WLLYFTIYTFLST---SIIFL-----FQSFQ 203
Cdd:PRK05777  275 IIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLgafGVISLlrrkgGEAES 354

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2438000133 204 LYHINQnfLINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:PRK05777  355 ISDFAG--LSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKLMYF 430
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-281 3.11e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 99.04  E-value: 3.11e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPL-MTNTKNTLSTEASLKYFLIQALASSILLFSVVL-------MHLNNMSLLIN 72
Cdd:COG1007   114 GMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLlygatgsLNLAGIAAALA 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  73 QNLFLTLISSSLLL--------KMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPF---------MLISYVISVNTFIT 135
Cdd:COG1007   194 AGGANSPLLLLGLVlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFaallrllveAFPGLAADWQLLLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 136 LVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENMW----LLYFTIYTFLSTSIIFLFQSF-QLYHINQN 210
Cdd:COG1007   274 VLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaaLFYLLAYLFMNLGAFAVILLLsRKGGEAEE 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2438000133 211 F-----LINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:COG1007   354 IedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYF 429
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-304 4.13e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.09  E-value: 4.13e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMT-NTKNTLSTEASLKYFLIQALASSILLFSVVLM-------HLNNMSLLIN 72
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslNFEDLLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  73 QNLFLTLISSS--------LLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPF-------MLISYVISVNTFITLV 137
Cdd:TIGR01770 194 NGMLNISLLLLgivlilvgLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFavflrlfLYILFGFSEAWQIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 138 IVS--SIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENM----WLLYFTIYTFLSTSIIFLFQSFQLYHINQNF 211
Cdd:TIGR01770 274 IIAflSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYKDEWIE 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 212 -------LINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSY 284
Cdd:TIGR01770 354 yisdfagLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYFDKP 433

                         330       340
                  ....*....|....*....|
gi 2438000133 285 QevKWIEIMPYNLTTYSTLM 304
Cdd:TIGR01770 434 E--RRIPSNPQSKAQSLLLS 451
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 15-275 4.85e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 72.10  E-value: 4.85e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  15 WMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLN----NMSLLINQNLFLTLISSSLL----- 85
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGAtgtlNMADLAARLAELDPGLLLAAfalll 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  86 ----LKMGAAPFHFWFPGTM-EGLSWMNCLI--LMTwqKIAPFMLI---------SYVISVNTFITLVIVSSIIIGSLGG 149
Cdd:COG0651   213 vgfgIKAALFPLHFWLPDAYpAAPSPVSALLsgLLT--KVGVYAILrvltllfgaDPALFLGTLLLVLGLLTMLVGALGA 290

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 150 LNQTSLRKLMAYSSINHLGWMVAAL---TAGENMWLLYFTIYTFLSTSIIFL--------FQSFQLYHINQnfLINLNPS 218
Cdd:COG0651   291 LAQRDLKRLLAYSSVSQIGYILLGLglgTPLGLAGALFHLLNHALAKALLFLaagaieraTGTRDLDKLGG--LGKRMPL 368

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2438000133 219 LKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRL 275
Cdd:COG0651   369 TAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 18-280 1.16e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 67.98  E-value: 1.16e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  18 LEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLN----NMSLLINQ-------NLFLTLISSSLLL 86
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVtgtlNMADLAGAlaenptvVTAFGFVLLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  87 KMGAAPFHFWFPGTM-EGLSWMNCLILMTWQKIAPFMLISYVISVNTF----------ITLVIVS-SIIIGSLGGLNQTS 154
Cdd:PRK08375  215 KAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgwLLAVLALlSMLVGSLAALGQDD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 155 LRKLMAYSSINHLGWMV--------AALTAGenmwLLY------FTIYTFLSTSIIFLfqsfqLYHINQ----NFLINLN 216
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILlglalltpLALAAG----LLHllhhalMKGALFLAAGAIEV-----TYGTRRlselSGLGRRM 365

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2438000133 217 PSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAF 280
Cdd:PRK08375  366 PLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAF 429
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 1-275 2.94e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 64.11  E-value: 2.94e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133   1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLST---------EASLKYFLIQALASSILLFSVVLMH-------- 63
Cdd:MTH00198  200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFgftgnegm 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  64 --------LNNMSLLINQNLF-LTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISVNTFI 134
Cdd:MTH00198  280 lgtilsatLETTNIELRQGSLgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLL 359

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 135 TLVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAG-----ENMW--LLYFTIYTFLSTSIIFLFQSFQLYHI 207
Cdd:MTH00198  360 LSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGtyeslQASWtyAVTYLVSALASFTVICTLEEFGTRTP 439

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 208 NQ-------------------NFLINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNP-------FLIVVM 261
Cdd:MTH00198  440 TSrqrdgsfgnynlvrrlvdlTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSsslsiyyLVALFA 519

                         330
                  ....*....|....
gi 2438000133 262 VITTLLTLFYYLRL 275
Cdd:MTH00198  520 IICTCISAFYYIRI 533
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 39-281 6.11e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 62.81  E-value: 6.11e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  39 EASLKYFLIQALASSILLFSVVLMHLN----NMSLL---INQNLFLT------LISSSLLLKMGAAPFHFWFP-GTMEGL 104
Cdd:PRK08376  172 EAGIKYMFVGSLASSMVLLGIALLYGQygtlNMAYLavkMSENPTVVakialaLFIAGLAMKSGAVPVHMWLPdAYPAAP 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 105 SWMNCLILMTWQ----KIAPFMLISYVISVNT-----FITLVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALT 175
Cdd:PRK08376  252 SSISAMLLVIKQaglyALARVLFSIYGPAINLatvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLG 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 176 AGenmwllYFTIYTFLSTSIIFLFQSFQLYHINQN-------FLI-----------NLN---------PSLKFCLFFLLL 228
Cdd:PRK08376  332 VG------LAALGDPAMASYGEIALAGGIYHIVNHalykallFLTagaviyetgtrNLNelgglartmPKTTIAFLIGAA 405

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2438000133 229 SLGGLPPFTGFLPKWLVIQSlVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:PRK08376  406 AIVGLPPFNGFASKWLIYES-SALFNPILGVIAMIGSVLTLASFVKVFHTAFF 457
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 141-281 5.00e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 50.74  E-value: 5.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 141 SIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENMWLLYFTIYTF---LSTSIIFLFQSFQLYHINQN------F 211
Cdd:PRK12667  305 SAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaIAKSLLFLASGVFIHAAGTRdidelaG 384

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 212 LINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:PRK12667  385 LGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFF 454
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
37-191 5.98e-07

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 50.82  E-value: 5.98e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  37 STEASLKYFLIQALASSILLFSVVLM--------HLNNMSLLINQNLFLTLISSSLLL------KMGAAPFHFWFPGTME 102
Cdd:PRK02504  159 SNEAALKYLLIGAASSAIFLYGSSLLyglsggstQLSAIALALITSPSLGLALALVFViagiafKISAVPFHQWTPDVYE 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 103 GLSWMNCLILMTWQKIAPFML-ISYVISV--------NTFITLVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGW---- 169
Cdd:PRK02504  239 GSPTPVVAFLSVGSKAAGFALaIRLLVTAfpsfdeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvmig 318

                         170       180
                  ....*....|....*....|..
gi 2438000133 170 MVAALTAGENMWLLYFTIYTFL 191
Cdd:PRK02504  319 LVAGTEAGYASMVFYLLAYLFM 340
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
132-307 1.24e-06

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 49.56  E-value: 1.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 132 TFITLVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGEN----------------MWLLYFTIytflsTSI 195
Cdd:PRK12663  273 PLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPagingaifylvhdmvvKTALFLIA-----GSL 347

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 196 IFLFQSFQLYHINQnfLINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRL 275
Cdd:PRK12663  348 VRLTGYRSLQYLGG--LYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2438000133 276 TFAAFlFSYQEVKWIEIMPYNLTTYSTLMTLT 307
Cdd:PRK12663  426 FFLAY-WGDKDGEEVNFKPIPLYRKLPLSILA 456
ndhB CHL00049
NADH dehydrogenase subunit 2
 37-275 2.85e-06

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 48.46  E-value: 2.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  37 STEASLKYFLIQALASSILLFSVVLMH------------LNNMSLLINQNLFLTLISSSLLL-----KMGAAPFHFWFPG 99
Cdd:CHL00049  160 SNEATMKYLLMGGASSSILVYGFSWLYglsggeielqeiVNGLINTQMYNSPGISIALIFITvgigfKLSLAPFHQWTPD 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 100 TMEGLSWMNCLILMTWQKIAPFMLISYVISV---------NTFITLVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWM 170
Cdd:CHL00049  240 VYEGSPTPVVAFLSVTSKVAASALATRIFDIpfyfssnewHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYV 319

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 171 VAALTAGENMW-----LLYFTIYTFLSTSIIFLFQSFQLYHINQNF-----LINLNPSLKFCLFFLLLSLGGLPPFTGFL 240
Cdd:CHL00049  320 IIGIIVGDSNDgyasmITYMLFYIFMNLGTFACIVLFGLRTGTDNIrdyagLYTKDPFLALSLALCLLSLGGIPPLAGFF 399

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2438000133 241 PKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRL 275
Cdd:CHL00049  400 GKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
121-281 2.93e-06

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 48.49  E-value: 2.93e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 121 FMLISYVISVNTFITLVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENMWL---LYFTIYTFLSTSIIF 197
Cdd:PRK06277  256 FGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIvagIFHAINHVIYKSALF 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 198 LFQSFQLYHINQN------FLINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFY 271
Cdd:PRK06277  336 LGAGIVSYRTKTSnlrklgGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVS 415

                         170
                  ....*....|
gi 2438000133 272 YLRLTFAAFL 281
Cdd:PRK06277  416 MMKAFYLIYL 425
PRK12650 PRK12650
DUF4040 family protein;
92-280 4.07e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.03  E-value: 4.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  92 PFHFWFPGTMEGLSWMNCLI---LMTWQKIAPFMLISYVISVNTF--ITLVIVSSI--IIGSLGGLNQTSLRKLMAYSSI 164
Cdd:PRK12650  226 PFHFWLPEAMAAITPVSAFLhaaAVVKAGIYLLLRFSPVFHDVAVwnWLLIIVGMItaLMGAVFAVQKTDLKKLTAYSTV 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 165 NHLGWMVAALTAGENMWLLYFTIYTFLSTsiifLFQS--FQLYHINQN-----------FLINLNPSLKFCLFFLLLSLG 231
Cdd:PRK12650  306 SQLGWIVATIGVGTPFALTAAVVHTLAHA----LFKSslFMLIGVVDHqagtrdirrlgSLWRRMPFTFVSVTIAALSMA 381

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2438000133 232 GLPPFTGFLPKWLVIQSLVE--MNNP---FLIVVMVITTLLTLFYYLRLTFAAF 280
Cdd:PRK12650  382 AVPPLFGFVSKEGMLTAFLEapGGNAgvvLLLVGAALGAVFTFAYSARLVLGAF 435
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 37-281 6.85e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 44.22  E-value: 6.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  37 STEASLKYFLIQALASSILLFSV--------------VLMHLNNMSLLINQNLFLTLISSSLLLKMGAAPFHFWFPGTME 102
Cdd:PRK08668  145 SRKASLKYFVLSAIGAYAMLYAIfliyaktgtfdfadISQGLINDTSTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYS 224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 103 ------------GLSWMNCLILMTWQKIAPFMLISY----VISVNTFITLVIV---SSIIIGSLGGLNQTSLRKLMAYSS 163
Cdd:PRK08668  225 eapqsfsavlsgQLSKLGAYGFLLVLYVLPGTKLFSefgtYRGVPLFNYILAWlgnISIIVGTLMAILQEDIKKLIAYSS 304

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 164 INHLGWMVAALTAGENMWL---LYFTIYTFLSTSIIFLFQSFQLYHI-NQNF-----LINLNPSLKFCLFFLLLSLGGLP 234
Cdd:PRK08668  305 VANGGYILVGLGLGTSLGFaggLFHVFNHALFKGLFFLIFAAVIYRTgTTKIsemggLIEKMPFTFAMYLVAIISLAGIP 384

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2438000133 235 PFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:PRK08668  385 PMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLAGVFL 431
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 92-281 1.07e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 43.60  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  92 PFHFWFPGTMEGLSWMNCLI-----------LMTwqKIAPFMLISYVisVNTFITLVIVSSIIIGSLGGLNQTSLRKLMA 160
Cdd:COG1009   229 PLHFWLPDAMEGPTPVSALLhaatmvkagvyLLA--RLSPLFALSPV--WLTVVAIIGAITALFAALIALAQTDIKRVLA 304

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 161 YSSINHLGWMVAALTAGeNMWLLYFTIYT--------FLSTSIIflfqsfQLYHINQNF-----LINLNPSLKFCLFFLL 227
Cdd:COG1009   305 YSTVSQLGYMFLALGVG-AYVAALFHLLThaffkallFLGAGSV------IHATGTRDIrkmggLRKKMPITAITFLIGA 377

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2438000133 228 LSLGGLPPFTGFLPKWLVIQSLVEMN--NPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:COG1009   378 LSLAGIPPFAGFFSKEAILEAALEAGglGPLLLAVALLGAFLTAFYSFRLFFLVFF 433
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
92-280 6.57e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 41.16  E-value: 6.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  92 PFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLI-------SYVISVNTFITLVIVSSIIIGSLGGLNQTSLRKLMAYSSI 164
Cdd:PRK07376  245 PLHVWLPDAMEGPTPISALIHAATMVAAGVFLVarmypvfEQFPAVMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTI 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 165 NHLGWMVAALTAGEN-------MWLLYFTIYTFL-STSII-----------FLFQSFQLyhinQNFLINLNPSLKFCLFF 225
Cdd:PRK07376  325 SQLGYMVMAMGCGAYsaglfhlMTHAYFKAMLFLgSGSVIhgmeevvghdpVLAQDMRL----MGGLRKYMPITAITFLI 400

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2438000133 226 LLLSLGGLPPFTGFLPKwLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAF 280
Cdd:PRK07376  401 GCLAISGIPPFAGFWSK-DEILGAAFEANPALWFVGFLTAGMTAFYMFRMYFLTF 454
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 93-281 3.72e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.90  E-value: 3.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133  93 FHFWFPGTMEGLSWMNCLI-LMTWQKIAPFMLI--SYVISVNTFITLVIvssIIIGSLG-------GLNQTSLRKLMAYS 162
Cdd:MTH00020  229 LHTWLPDAMEGPTPVSALIhAATMVTAGVFLLIrsSPLFEQAPLALIIV---TIVGSLTvffaatvGLVQNDLKKVIAYS 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000133 163 SINHLGWMVAA-------LTAGENMWLLYFTIYTFLST-SIIFLFQSFQLYHiNQNFLINLNPSLKFCLFFLLLSLGGLP 234
Cdd:MTH00020  306 TCSQLGYMVVAcglshysISLFHLMNHAFFKALLFLSAgSVIHALSDEQDMR-KMGGLISFLPLTYIFFLIGSLSLMGFP 384

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2438000133 235 PFTGFLPKWLVIQslVEMNNPFLIVVM---VITTLLTLFYYLRLTFAAFL 281
Cdd:MTH00020  385 YLTGFYSKDLILE--LAFGQYYLIFAYwlgCFSALLTAFYSIRLIYLTFL 432
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 141-177 5.54e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 38.14  E-value: 5.54e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2438000133 141 SIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAG 177
Cdd:COG1008   285 GIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFAL 321
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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