|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-304 |
6.42e-79 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 243.19 E-value: 6.42e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLNNMSlliNQNLFLTLI 80
Cdd:MTH00160 17 GTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLML---FNNISSMLI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 81 SSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISvNTFITLVIVSSIIIGSLGGLNQTSLRKLMA 160
Cdd:MTH00160 94 NSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAIIGAIGGLNQTSLRKILA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 161 YSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQNFLI-NLNPSLKFCLFFLLLSLGGLPPFTGF 239
Cdd:MTH00160 173 YSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSnNKSKKIKFLLFLNLLSLGGLPPFLGF 252
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2438000135 240 LPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSYQEVKWIEIMPYNLTTYSTLM 304
Cdd:MTH00160 253 LPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNF 317
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
8-265 |
2.62e-32 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 121.27 E-value: 2.62e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 8 SVSWFGAWMGLEINLLSFIPLMT-NTKNTLSTEASLKYFLIQALASSILLFSVVLMH--------------LNNMSLLIN 72
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYnytgtlsfdelskaLTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 73 QNLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLIL-MTWQKIAPFMLI-------SYVISVNTFITLVIVSSIII 144
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 145 GSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENM----WLLYFTIYTFLSTSIIFLFQSFQL------YHINQNFLIN 214
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSVIYrrvhtrNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2438000135 215 LNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITT 265
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
1-281 |
3.11e-23 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 99.04 E-value: 3.11e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPL-MTNTKNTLSTEASLKYFLIQALASSILLFSVVL-------MHLNNMSLLIN 72
Cdd:COG1007 114 GMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLlygatgsLNLAGIAAALA 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 73 QNLFLTLISSSLLL--------KMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPF---------MLISYVISVNTFIT 135
Cdd:COG1007 194 AGGANSPLLLLGLVlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFaallrllveAFPGLAADWQLLLA 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 136 LVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENMW----LLYFTIYTFLSTSIIFLFQSF-QLYHINQN 210
Cdd:COG1007 274 VLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaaLFYLLAYLFMNLGAFAVILLLsRKGGEAEE 353
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2438000135 211 F-----LINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:COG1007 354 IedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYF 429
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
1-304 |
4.13e-21 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 93.09 E-value: 4.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMT-NTKNTLSTEASLKYFLIQALASSILLFSVVLM-------HLNNMSLLIN 72
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslNFEDLLLFLS 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 73 QNLFLTLISSS--------LLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPF-------MLISYVISVNTFITLV 137
Cdd:TIGR01770 194 NGMLNISLLLLgivlilvgLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFavflrlfLYILFGFSEAWQIFLA 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 138 IVS--SIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENM----WLLYFTIYTFLSTSIIFLFQSFQLYHINQNF 211
Cdd:TIGR01770 274 IIAflSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYKDEWIE 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 212 -------LINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSY 284
Cdd:TIGR01770 354 yisdfagLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYFDKP 433
|
330 340
....*....|....*....|
gi 2438000135 285 QevKWIEIMPYNLTTYSTLM 304
Cdd:TIGR01770 434 E--RRIPSNPQSKAQSLLLS 451
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-304 |
6.42e-79 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 243.19 E-value: 6.42e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLNNMSlliNQNLFLTLI 80
Cdd:MTH00160 17 GTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLML---FNNISSMLI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 81 SSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISvNTFITLVIVSSIIIGSLGGLNQTSLRKLMA 160
Cdd:MTH00160 94 NSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAIIGAIGGLNQTSLRKILA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 161 YSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQNFLI-NLNPSLKFCLFFLLLSLGGLPPFTGF 239
Cdd:MTH00160 173 YSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSnNKSKKIKFLLFLNLLSLGGLPPFLGF 252
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2438000135 240 LPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSYQEVKWIEIMPYNLTTYSTLM 304
Cdd:MTH00160 253 LPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNF 317
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-312 |
6.23e-61 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 197.38 E-value: 6.23e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVV--LMHLNNMSLL-INQNLFL 77
Cdd:MTH00105 16 GTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIinLMYSGQWTITkLTNPTAS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 78 TLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFML---ISYVISVNTFITLVIvSSIIIGSLGGLNQTS 154
Cdd:MTH00105 96 TLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSIlyqISPSINPNLLLTLAI-LSILIGGWGGLNQTQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 155 LRKLMAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQ-NFLINLNPSLKFCLFFLLLSLGGL 233
Cdd:MTH00105 175 LRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSlSHTWNKTPLMTSLILLTLLSLGGL 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 234 PPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL--FSYQEVKWIEIMPYNLTTYSTLMTLTTISS 311
Cdd:MTH00105 255 PPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLtmFPSTNNMKMKWQFENTKPMTLLPTLIILST 334
|
.
gi 2438000135 312 L 312
Cdd:MTH00105 335 M 335
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-312 |
7.02e-60 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 194.75 E-value: 7.02e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVL-------MHLNNMSllinQ 73
Cdd:MTH00070 16 GTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInawftgeWTIMNMQ----T 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 74 NLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFML---ISYVISVNTFITLVIVsSIIIGSLGGL 150
Cdd:MTH00070 92 PLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALliqISHLLNSNLLIIMGLL-STLIGGWGGL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 151 NQTSLRKLMAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQNFLINL-NPSLKFCLFFLLLS 229
Cdd:MTH00070 171 NQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSkNPTLTSMMMLTLLS 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 230 LGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSYQEVKWIEIMPYNLTTYSTLMTLTTI 309
Cdd:MTH00070 251 LGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTII 330
|
...
gi 2438000135 310 SSL 312
Cdd:MTH00070 331 LSL 333
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-311 |
2.68e-59 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 193.22 E-value: 2.68e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLNNMSLLINQNLFLTLI 80
Cdd:MTH00041 16 GTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 81 SSSLL---LKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVI-SVNTFITLVI-VSSIIIGSLGGLNQTSL 155
Cdd:MTH00041 96 IIITLalaLKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISnLLNSNILILCgILSVLVGGWGGLNQTQT 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 156 RKLMAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHI-NQNFLINLNPSLKFCLFFLLLSLGGLP 234
Cdd:MTH00041 176 RKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLsHLNKLSQLNPISAFLFILSILSLGGLP 255
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2438000135 235 PFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSYQEVKWIEIMPYNLTTYSTLMTLTTISS 311
Cdd:MTH00041 256 PLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSILS 332
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-277 |
1.90e-58 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 191.19 E-value: 1.90e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLNNMSLLINQ---NLFL 77
Cdd:MTH00112 16 GTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQltnPTSC 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 78 TLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLIsYVISVN---TFITLVIVSSIIIGSLGGLNQTS 154
Cdd:MTH00112 96 TLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLL-LMTSNSlnpTLLLTLAILSTLIGGWGGLNQTQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 155 LRKLMAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQNFLI-NLNPSLKFCLFFLLLSLGGL 233
Cdd:MTH00112 175 LRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSwTKSPTLNTTLMLTLLSLAGL 254
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2438000135 234 PPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTF 277
Cdd:MTH00112 255 PPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTY 298
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-288 |
1.41e-56 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 185.86 E-value: 1.41e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLNNMSLLInqnlfLTLI 80
Cdd:MTH00144 16 GTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS-----MSLL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 81 SSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISVNTFITLVIVSSI---IIGSLGGLNQTSLRK 157
Cdd:MTH00144 91 LLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVlsaLVGSIGGLNQTQVRA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 158 LMAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQNFLINLNPSLKFCLFFLLLSLGGLPPFT 237
Cdd:MTH00144 171 LLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLLLSLGGLPPFL 250
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2438000135 238 GFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSYQEVK 288
Cdd:MTH00144 251 GFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKK 301
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-281 |
1.38e-54 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 181.16 E-value: 1.38e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVL-------MHLNNMSllinQ 73
Cdd:MTH00135 16 GTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTnawltgqWDIQQMS----H 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 74 NLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISVN-TFITLVIVSSIIIGSLGGLNQ 152
Cdd:MTH00135 92 PLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNpTLLITLGLTSTLVGGWGGLNQ 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 153 TSLRKLMAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINqnfliNL------NPSLKFCLFFL 226
Cdd:MTH00135 172 TQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKIN-----TLatswtkAPALTALTPLI 246
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2438000135 227 LLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:MTH00135 247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTL 301
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-283 |
5.30e-51 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 171.50 E-value: 5.30e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHlnnMSLLINQNLFLTLI 80
Cdd:MTH00011 18 GTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMW---SFPSLLKNITALML 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 81 SSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISVN--TFITLVIVSSIIIGSLGGLNQTSLRKL 158
Cdd:MTH00011 95 LVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNilPMMTSMAAMSALAGGLGGMNQTQLRPL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 159 MAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQNFLI-NLNPSLKFCLFFLLLSLGGLPPFT 237
Cdd:MTH00011 175 LAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKIsSMSQTTSMSLFIMLLSLGGLPPFT 254
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2438000135 238 GFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFS 283
Cdd:MTH00011 255 GFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLS 300
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-283 |
1.64e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 170.53 E-value: 1.64e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLNNMSLLINQ---NLFL 77
Cdd:MTH00200 16 GTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEmlgPLSE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 78 TLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISV--NTFITLVIVSSIIIGSLGGLNQTSL 155
Cdd:MTH00200 96 TLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPAlnSNILLLLGLLSVLVGGWGGLNQTQL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 156 RKLMAYSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQ-NFLINLNPSLKFCLFFLLLSLGGLP 234
Cdd:MTH00200 176 RKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSlSSSKTKNPILSMLLGLTLLSLGGLP 255
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2438000135 235 PFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFS 283
Cdd:MTH00200 256 PLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTL 304
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
1-288 |
2.47e-48 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 164.07 E-value: 2.47e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLNNMSLLinqnLFLTLI 80
Cdd:MTH00197 10 GVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSL----LSVVLV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 81 SSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISVNTFITLVIVSSIIIGSLGGLNQTSLRKLMA 160
Cdd:MTH00197 86 ILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 161 YSSINHLGWMVAALTAGENMWLLYFTIYTFLSTSIIFLFQSFQLYHINQ-NFLINLNPSLKFCLFFLLLSLGGLPPFTGF 239
Cdd:MTH00197 166 YSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQqYSNPESMSSNLVFLGLSFLSLGGLPPLSGF 245
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2438000135 240 LPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSYQEVK 288
Cdd:MTH00197 246 FLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMIN 294
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
8-265 |
2.62e-32 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 121.27 E-value: 2.62e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 8 SVSWFGAWMGLEINLLSFIPLMT-NTKNTLSTEASLKYFLIQALASSILLFSVVLMH--------------LNNMSLLIN 72
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYnytgtlsfdelskaLTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 73 QNLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLIL-MTWQKIAPFMLI-------SYVISVNTFITLVIVSSIII 144
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 145 GSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENM----WLLYFTIYTFLSTSIIFLFQSFQL------YHINQNFLIN 214
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSVIYrrvhtrNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2438000135 215 LNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITT 265
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
1-275 |
2.30e-25 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 105.10 E-value: 2.30e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTL-STEASLKYFLIQALASSILLFSVVLMH-------LNNMSLLIN 72
Cdd:MTH00199 109 GSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAySTEAGLKYFVLGAVSSGLFLFGCALLYgltgetsIQGINSILT 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 73 QNLFLTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISVNTFITLVIVSSIIIGSLGGLNQ 152
Cdd:MTH00199 189 GDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGALNQ 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 153 TSLRKLMAYSSINHLGWMVAALTAGEN----MWLLYFTIYTFLSTSIIFLFQSFQLyhiNQNFLINL------NPSLKFC 222
Cdd:MTH00199 269 TKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSICSFSIILSLKL---TKGLIVEVsglsrkNPVIALT 345
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2438000135 223 LFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRL 275
Cdd:MTH00199 346 LALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
1-275 |
3.04e-24 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 100.88 E-value: 3.04e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTL-STEASLKYFLIQALASSILLFSVVLM-------HLNNMSLLIN 72
Cdd:MTH00196 5 GILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGySAEAGLKYFVLGALSSGLFLFGCALLcgttgglHLSYINLVLN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 73 QNLFLTLISSSL---------LLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISVNTFITLVIVSSII 143
Cdd:MTH00196 85 SGQSFSSVSVPIgylliivalLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSLF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 144 IGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGE----NMWLLYFTIYTFLStsiIFLFQSFQLYHINQNFLINL---- 215
Cdd:MTH00196 165 VGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMS---ICVFSIILALNVYKNLIIEFsgls 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2438000135 216 --NPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRL 275
Cdd:MTH00196 242 rrLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
1-281 |
2.54e-23 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 99.51 E-value: 2.54e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEI-NLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVL-------MHLNNMSLLIN 72
Cdd:PRK05777 115 GMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLlygatgsLSFAGIAKALA 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 73 QNLFLTLISSS--------LLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLI---------SYVISVNTFIT 135
Cdd:PRK05777 195 DGSGNSLLLLFglvfllvgLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafgGLSEDWQQVLA 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 136 LVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENM----WLLYFTIYTFLST---SIIFL-----FQSFQ 203
Cdd:PRK05777 275 IIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLgafGVISLlrrkgGEAES 354
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2438000135 204 LYHINQnfLINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:PRK05777 355 ISDFAG--LSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKLMYF 430
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
1-281 |
3.11e-23 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 99.04 E-value: 3.11e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPL-MTNTKNTLSTEASLKYFLIQALASSILLFSVVL-------MHLNNMSLLIN 72
Cdd:COG1007 114 GMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLlygatgsLNLAGIAAALA 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 73 QNLFLTLISSSLLL--------KMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPF---------MLISYVISVNTFIT 135
Cdd:COG1007 194 AGGANSPLLLLGLVlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFaallrllveAFPGLAADWQLLLA 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 136 LVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENMW----LLYFTIYTFLSTSIIFLFQSF-QLYHINQN 210
Cdd:COG1007 274 VLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaaLFYLLAYLFMNLGAFAVILLLsRKGGEAEE 353
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2438000135 211 F-----LINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:COG1007 354 IedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYF 429
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
1-304 |
4.13e-21 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 93.09 E-value: 4.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMT-NTKNTLSTEASLKYFLIQALASSILLFSVVLM-------HLNNMSLLIN 72
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslNFEDLLLFLS 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 73 QNLFLTLISSS--------LLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPF-------MLISYVISVNTFITLV 137
Cdd:TIGR01770 194 NGMLNISLLLLgivlilvgLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFavflrlfLYILFGFSEAWQIFLA 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 138 IVS--SIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENM----WLLYFTIYTFLSTSIIFLFQSFQLYHINQNF 211
Cdd:TIGR01770 274 IIAflSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYKDEWIE 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 212 -------LINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFLFSY 284
Cdd:TIGR01770 354 yisdfagLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYFDKP 433
|
330 340
....*....|....*....|
gi 2438000135 285 QevKWIEIMPYNLTTYSTLM 304
Cdd:TIGR01770 434 E--RRIPSNPQSKAQSLLLS 451
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
15-275 |
4.85e-14 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 72.10 E-value: 4.85e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 15 WMGLEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLN----NMSLLINQNLFLTLISSSLL----- 85
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGAtgtlNMADLAARLAELDPGLLLAAfalll 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 86 ----LKMGAAPFHFWFPGTM-EGLSWMNCLI--LMTwqKIAPFMLI---------SYVISVNTFITLVIVSSIIIGSLGG 149
Cdd:COG0651 213 vgfgIKAALFPLHFWLPDAYpAAPSPVSALLsgLLT--KVGVYAILrvltllfgaDPALFLGTLLLVLGLLTMLVGALGA 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 150 LNQTSLRKLMAYSSINHLGWMVAAL---TAGENMWLLYFTIYTFLSTSIIFL--------FQSFQLYHINQnfLINLNPS 218
Cdd:COG0651 291 LAQRDLKRLLAYSSVSQIGYILLGLglgTPLGLAGALFHLLNHALAKALLFLaagaieraTGTRDLDKLGG--LGKRMPL 368
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 2438000135 219 LKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRL 275
Cdd:COG0651 369 TAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
18-280 |
1.16e-12 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 67.98 E-value: 1.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 18 LEINLLSFIPLMTNTKNTLSTEASLKYFLIQALASSILLFSVVLMHLN----NMSLLINQ-------NLFLTLISSSLLL 86
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVtgtlNMADLAGAlaenptvVTAFGFVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 87 KMGAAPFHFWFPGTM-EGLSWMNCLILMTWQKIAPFMLISYVISVNTF----------ITLVIVS-SIIIGSLGGLNQTS 154
Cdd:PRK08375 215 KAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgwLLAVLALlSMLVGSLAALGQDD 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 155 LRKLMAYSSINHLGWMV--------AALTAGenmwLLY------FTIYTFLSTSIIFLfqsfqLYHINQ----NFLINLN 216
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILlglalltpLALAAG----LLHllhhalMKGALFLAAGAIEV-----TYGTRRlselSGLGRRM 365
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2438000135 217 PSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAF 280
Cdd:PRK08375 366 PLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAF 429
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
1-275 |
2.94e-11 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 64.11 E-value: 2.94e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 1 GTLISISSVSWFGAWMGLEINLLSFIPLMTNTKNTLST---------EASLKYFLIQALASSILLFSVVLMH-------- 63
Cdd:MTH00198 200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFgftgnegm 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 64 --------LNNMSLLINQNLF-LTLISSSLLLKMGAAPFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLISYVISVNTFI 134
Cdd:MTH00198 280 lgtilsatLETTNIELRQGSLgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLL 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 135 TLVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAG-----ENMW--LLYFTIYTFLSTSIIFLFQSFQLYHI 207
Cdd:MTH00198 360 LSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGtyeslQASWtyAVTYLVSALASFTVICTLEEFGTRTP 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 208 NQ-------------------NFLINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNP-------FLIVVM 261
Cdd:MTH00198 440 TSrqrdgsfgnynlvrrlvdlTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSsslsiyyLVALFA 519
|
330
....*....|....
gi 2438000135 262 VITTLLTLFYYLRL 275
Cdd:MTH00198 520 IICTCISAFYYIRI 533
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
39-281 |
6.11e-11 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 62.81 E-value: 6.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 39 EASLKYFLIQALASSILLFSVVLMHLN----NMSLL---INQNLFLT------LISSSLLLKMGAAPFHFWFP-GTMEGL 104
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGIALLYGQygtlNMAYLavkMSENPTVVakialaLFIAGLAMKSGAVPVHMWLPdAYPAAP 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 105 SWMNCLILMTWQ----KIAPFMLISYVISVNT-----FITLVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALT 175
Cdd:PRK08376 252 SSISAMLLVIKQaglyALARVLFSIYGPAINLatvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLG 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 176 AGenmwllYFTIYTFLSTSIIFLFQSFQLYHINQN-------FLI-----------NLN---------PSLKFCLFFLLL 228
Cdd:PRK08376 332 VG------LAALGDPAMASYGEIALAGGIYHIVNHalykallFLTagaviyetgtrNLNelgglartmPKTTIAFLIGAA 405
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2438000135 229 SLGGLPPFTGFLPKWLVIQSlVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:PRK08376 406 AIVGLPPFNGFASKWLIYES-SALFNPILGVIAMIGSVLTLASFVKVFHTAFF 457
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
141-281 |
5.00e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 50.74 E-value: 5.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 141 SIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENMWLLYFTIYTF---LSTSIIFLFQSFQLYHINQN------F 211
Cdd:PRK12667 305 SAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaIAKSLLFLASGVFIHAAGTRdidelaG 384
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 212 LINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:PRK12667 385 LGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFF 454
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
37-191 |
5.98e-07 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 50.82 E-value: 5.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 37 STEASLKYFLIQALASSILLFSVVLM--------HLNNMSLLINQNLFLTLISSSLLL------KMGAAPFHFWFPGTME 102
Cdd:PRK02504 159 SNEAALKYLLIGAASSAIFLYGSSLLyglsggstQLSAIALALITSPSLGLALALVFViagiafKISAVPFHQWTPDVYE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 103 GLSWMNCLILMTWQKIAPFML-ISYVISV--------NTFITLVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGW---- 169
Cdd:PRK02504 239 GSPTPVVAFLSVGSKAAGFALaIRLLVTAfpsfdeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvmig 318
|
170 180
....*....|....*....|..
gi 2438000135 170 MVAALTAGENMWLLYFTIYTFL 191
Cdd:PRK02504 319 LVAGTEAGYASMVFYLLAYLFM 340
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
132-307 |
1.24e-06 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 49.56 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 132 TFITLVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGEN----------------MWLLYFTIytflsTSI 195
Cdd:PRK12663 273 PLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPagingaifylvhdmvvKTALFLIA-----GSL 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 196 IFLFQSFQLYHINQnfLINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRL 275
Cdd:PRK12663 348 VRLTGYRSLQYLGG--LYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
|
170 180 190
....*....|....*....|....*....|..
gi 2438000135 276 TFAAFlFSYQEVKWIEIMPYNLTTYSTLMTLT 307
Cdd:PRK12663 426 FFLAY-WGDKDGEEVNFKPIPLYRKLPLSILA 456
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
37-275 |
2.85e-06 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 48.46 E-value: 2.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 37 STEASLKYFLIQALASSILLFSVVLMH------------LNNMSLLINQNLFLTLISSSLLL-----KMGAAPFHFWFPG 99
Cdd:CHL00049 160 SNEATMKYLLMGGASSSILVYGFSWLYglsggeielqeiVNGLINTQMYNSPGISIALIFITvgigfKLSLAPFHQWTPD 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 100 TMEGLSWMNCLILMTWQKIAPFMLISYVISV---------NTFITLVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWM 170
Cdd:CHL00049 240 VYEGSPTPVVAFLSVTSKVAASALATRIFDIpfyfssnewHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYV 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 171 VAALTAGENMW-----LLYFTIYTFLSTSIIFLFQSFQLYHINQNF-----LINLNPSLKFCLFFLLLSLGGLPPFTGFL 240
Cdd:CHL00049 320 IIGIIVGDSNDgyasmITYMLFYIFMNLGTFACIVLFGLRTGTDNIrdyagLYTKDPFLALSLALCLLSLGGIPPLAGFF 399
|
250 260 270
....*....|....*....|....*....|....*
gi 2438000135 241 PKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRL 275
Cdd:CHL00049 400 GKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
|
|
| PRK06277 |
PRK06277 |
energy conserving hydrogenase EhbF; |
121-281 |
2.93e-06 |
|
energy conserving hydrogenase EhbF;
Pssm-ID: 235767 [Multi-domain] Cd Length: 478 Bit Score: 48.49 E-value: 2.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 121 FMLISYVISVNTFITLVIVSSIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAGENMWL---LYFTIYTFLSTSIIF 197
Cdd:PRK06277 256 FGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIvagIFHAINHVIYKSALF 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 198 LFQSFQLYHINQN------FLINLNPSLKFCLFFLLLSLGGLPPFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFY 271
Cdd:PRK06277 336 LGAGIVSYRTKTSnlrklgGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVS 415
|
170
....*....|
gi 2438000135 272 YLRLTFAAFL 281
Cdd:PRK06277 416 MMKAFYLIYL 425
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
92-280 |
4.07e-05 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 45.03 E-value: 4.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 92 PFHFWFPGTMEGLSWMNCLI---LMTWQKIAPFMLISYVISVNTF--ITLVIVSSI--IIGSLGGLNQTSLRKLMAYSSI 164
Cdd:PRK12650 226 PFHFWLPEAMAAITPVSAFLhaaAVVKAGIYLLLRFSPVFHDVAVwnWLLIIVGMItaLMGAVFAVQKTDLKKLTAYSTV 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 165 NHLGWMVAALTAGENMWLLYFTIYTFLSTsiifLFQS--FQLYHINQN-----------FLINLNPSLKFCLFFLLLSLG 231
Cdd:PRK12650 306 SQLGWIVATIGVGTPFALTAAVVHTLAHA----LFKSslFMLIGVVDHqagtrdirrlgSLWRRMPFTFVSVTIAALSMA 381
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2438000135 232 GLPPFTGFLPKWLVIQSLVE--MNNP---FLIVVMVITTLLTLFYYLRLTFAAF 280
Cdd:PRK12650 382 AVPPLFGFVSKEGMLTAFLEapGGNAgvvLLLVGAALGAVFTFAYSARLVLGAF 435
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
37-281 |
6.85e-05 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 44.22 E-value: 6.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 37 STEASLKYFLIQALASSILLFSV--------------VLMHLNNMSLLINQNLFLTLISSSLLLKMGAAPFHFWFPGTME 102
Cdd:PRK08668 145 SRKASLKYFVLSAIGAYAMLYAIfliyaktgtfdfadISQGLINDTSTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYS 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 103 ------------GLSWMNCLILMTWQKIAPFMLISY----VISVNTFITLVIV---SSIIIGSLGGLNQTSLRKLMAYSS 163
Cdd:PRK08668 225 eapqsfsavlsgQLSKLGAYGFLLVLYVLPGTKLFSefgtYRGVPLFNYILAWlgnISIIVGTLMAILQEDIKKLIAYSS 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 164 INHLGWMVAALTAGENMWL---LYFTIYTFLSTSIIFLFQSFQLYHI-NQNF-----LINLNPSLKFCLFFLLLSLGGLP 234
Cdd:PRK08668 305 VANGGYILVGLGLGTSLGFaggLFHVFNHALFKGLFFLIFAAVIYRTgTTKIsemggLIEKMPFTFAMYLVAIISLAGIP 384
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2438000135 235 PFTGFLPKWLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:PRK08668 385 PMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLAGVFL 431
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
92-281 |
1.07e-04 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 43.60 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 92 PFHFWFPGTMEGLSWMNCLI-----------LMTwqKIAPFMLISYVisVNTFITLVIVSSIIIGSLGGLNQTSLRKLMA 160
Cdd:COG1009 229 PLHFWLPDAMEGPTPVSALLhaatmvkagvyLLA--RLSPLFALSPV--WLTVVAIIGAITALFAALIALAQTDIKRVLA 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 161 YSSINHLGWMVAALTAGeNMWLLYFTIYT--------FLSTSIIflfqsfQLYHINQNF-----LINLNPSLKFCLFFLL 227
Cdd:COG1009 305 YSTVSQLGYMFLALGVG-AYVAALFHLLThaffkallFLGAGSV------IHATGTRDIrkmggLRKKMPITAITFLIGA 377
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2438000135 228 LSLGGLPPFTGFLPKWLVIQSLVEMN--NPFLIVVMVITTLLTLFYYLRLTFAAFL 281
Cdd:COG1009 378 LSLAGIPPFAGFFSKEAILEAALEAGglGPLLLAVALLGAFLTAFYSFRLFFLVFF 433
|
|
| PRK07376 |
PRK07376 |
NADH-quinone oxidoreductase subunit L; |
92-280 |
6.57e-04 |
|
NADH-quinone oxidoreductase subunit L;
Pssm-ID: 236005 [Multi-domain] Cd Length: 673 Bit Score: 41.16 E-value: 6.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 92 PFHFWFPGTMEGLSWMNCLILMTWQKIAPFMLI-------SYVISVNTFITLVIVSSIIIGSLGGLNQTSLRKLMAYSSI 164
Cdd:PRK07376 245 PLHVWLPDAMEGPTPISALIHAATMVAAGVFLVarmypvfEQFPAVMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTI 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 165 NHLGWMVAALTAGEN-------MWLLYFTIYTFL-STSII-----------FLFQSFQLyhinQNFLINLNPSLKFCLFF 225
Cdd:PRK07376 325 SQLGYMVMAMGCGAYsaglfhlMTHAYFKAMLFLgSGSVIhgmeevvghdpVLAQDMRL----MGGLRKYMPITAITFLI 400
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2438000135 226 LLLSLGGLPPFTGFLPKwLVIQSLVEMNNPFLIVVMVITTLLTLFYYLRLTFAAF 280
Cdd:PRK07376 401 GCLAISGIPPFAGFWSK-DEILGAAFEANPALWFVGFLTAGMTAFYMFRMYFLTF 454
|
|
| ND5 |
MTH00020 |
NADH dehydrogenase subunit 5; Reviewed |
93-281 |
3.72e-03 |
|
NADH dehydrogenase subunit 5; Reviewed
Pssm-ID: 214400 [Multi-domain] Cd Length: 610 Bit Score: 38.90 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 93 FHFWFPGTMEGLSWMNCLI-LMTWQKIAPFMLI--SYVISVNTFITLVIvssIIIGSLG-------GLNQTSLRKLMAYS 162
Cdd:MTH00020 229 LHTWLPDAMEGPTPVSALIhAATMVTAGVFLLIrsSPLFEQAPLALIIV---TIVGSLTvffaatvGLVQNDLKKVIAYS 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2438000135 163 SINHLGWMVAA-------LTAGENMWLLYFTIYTFLST-SIIFLFQSFQLYHiNQNFLINLNPSLKFCLFFLLLSLGGLP 234
Cdd:MTH00020 306 TCSQLGYMVVAcglshysISLFHLMNHAFFKALLFLSAgSVIHALSDEQDMR-KMGGLISFLPLTYIFFLIGSLSLMGFP 384
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2438000135 235 PFTGFLPKWLVIQslVEMNNPFLIVVM---VITTLLTLFYYLRLTFAAFL 281
Cdd:MTH00020 385 YLTGFYSKDLILE--LAFGQYYLIFAYwlgCFSALLTAFYSIRLIYLTFL 432
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
141-177 |
5.54e-03 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 38.14 E-value: 5.54e-03
10 20 30
....*....|....*....|....*....|....*..
gi 2438000135 141 SIIIGSLGGLNQTSLRKLMAYSSINHLGWMVAALTAG 177
Cdd:COG1008 285 GIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFAL 321
|
|
| |
