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Conserved domains on  [gi|2472594012|gb|WEY32343|]
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gG [Suid alphaherpesvirus 1]

Protein Classification

Herpes_glycop_D and PHA03247 domain-containing protein( domain architecture ID 10479825)

Herpes_glycop_D and PHA03247 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Herpes_glycop_D pfam01537
Herpesvirus glycoprotein D/GG/GX domain; This domain is found in several Herpes viruses ...
 60-174 5.61e-38

Herpesvirus glycoprotein D/GG/GX domain; This domain is found in several Herpes viruses glycoproteins. This is a family includes glycoprotein-D (gD or gIV) which is common to herpes simplex virus types 1 and 2, as well as equine herpes, bovine herpes and Marek's disease virus. Glycoprotein-D has been found on the viral envelope and the plasma membrane of infected cells. and gD immunization can produce an immune response to bovine herpes virus (BHV-1). This response is stronger than that of the other major glycoproteins gB (gI) and gC (gIII) in BHV-1. Glycoprotein G (gG)is one of the seven external glycoproteins of HSV1 and HSV2. This family also contains the glycoprotein GX, (gX), initially identified in Pseudorabies virus.


:

Pssm-ID: 426313 [Multi-domain]  Cd Length: 118  Bit Score: 134.76  E-value: 5.61e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2472594012  60 TDYSRGCEMRLLDPPLDVSSRSPD-PVNVTVAWFFDGGHCKVPLVHREYYGCPGDAMPSVETCtGGYSYTRTRIDTLMEY 138
Cdd:pfam01537   4 VTYSRGCGLVLLIPPVNVDSGLPEaAYNATVAWFRVGGGCRRPIYLREYYNCTGNAPPSPETC-DGYSPTYWRGGGYVSY 82

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2472594012 139 ALVNASLVLQPGLYDAGLYIVVLVFGDDAYLGTVSL 174
Cdd:pfam01537  83 ALVNASLLAAPGRFDSGQYRYVIGIGGDLHVGDFTV 118
 
Name Accession Description Interval E-value
Herpes_glycop_D pfam01537
Herpesvirus glycoprotein D/GG/GX domain; This domain is found in several Herpes viruses ...
 60-174 5.61e-38

Herpesvirus glycoprotein D/GG/GX domain; This domain is found in several Herpes viruses glycoproteins. This is a family includes glycoprotein-D (gD or gIV) which is common to herpes simplex virus types 1 and 2, as well as equine herpes, bovine herpes and Marek's disease virus. Glycoprotein-D has been found on the viral envelope and the plasma membrane of infected cells. and gD immunization can produce an immune response to bovine herpes virus (BHV-1). This response is stronger than that of the other major glycoproteins gB (gI) and gC (gIII) in BHV-1. Glycoprotein G (gG)is one of the seven external glycoproteins of HSV1 and HSV2. This family also contains the glycoprotein GX, (gX), initially identified in Pseudorabies virus.


Pssm-ID: 426313 [Multi-domain]  Cd Length: 118  Bit Score: 134.76  E-value: 5.61e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2472594012  60 TDYSRGCEMRLLDPPLDVSSRSPD-PVNVTVAWFFDGGHCKVPLVHREYYGCPGDAMPSVETCtGGYSYTRTRIDTLMEY 138
Cdd:pfam01537   4 VTYSRGCGLVLLIPPVNVDSGLPEaAYNATVAWFRVGGGCRRPIYLREYYNCTGNAPPSPETC-DGYSPTYWRGGGYVSY 82

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2472594012 139 ALVNASLVLQPGLYDAGLYIVVLVFGDDAYLGTVSL 174
Cdd:pfam01537  83 ALVNASLLAAPGRFDSGQYRYVIGIGGDLHVGDFTV 118
 
Name Accession Description Interval E-value
Herpes_glycop_D pfam01537
Herpesvirus glycoprotein D/GG/GX domain; This domain is found in several Herpes viruses ...
 60-174 5.61e-38

Herpesvirus glycoprotein D/GG/GX domain; This domain is found in several Herpes viruses glycoproteins. This is a family includes glycoprotein-D (gD or gIV) which is common to herpes simplex virus types 1 and 2, as well as equine herpes, bovine herpes and Marek's disease virus. Glycoprotein-D has been found on the viral envelope and the plasma membrane of infected cells. and gD immunization can produce an immune response to bovine herpes virus (BHV-1). This response is stronger than that of the other major glycoproteins gB (gI) and gC (gIII) in BHV-1. Glycoprotein G (gG)is one of the seven external glycoproteins of HSV1 and HSV2. This family also contains the glycoprotein GX, (gX), initially identified in Pseudorabies virus.


Pssm-ID: 426313 [Multi-domain]  Cd Length: 118  Bit Score: 134.76  E-value: 5.61e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2472594012  60 TDYSRGCEMRLLDPPLDVSSRSPD-PVNVTVAWFFDGGHCKVPLVHREYYGCPGDAMPSVETCtGGYSYTRTRIDTLMEY 138
Cdd:pfam01537   4 VTYSRGCGLVLLIPPVNVDSGLPEaAYNATVAWFRVGGGCRRPIYLREYYNCTGNAPPSPETC-DGYSPTYWRGGGYVSY 82

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2472594012 139 ALVNASLVLQPGLYDAGLYIVVLVFGDDAYLGTVSL 174
Cdd:pfam01537  83 ALVNASLLAAPGRFDSGQYRYVIGIGGDLHVGDFTV 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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