NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2476356600|gb|WFG53763|]
View 

NADH dehydrogenase subunit 1 (mitochondrion) [Chelonoidis vicina]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-323 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 603.43  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600   1 MKTLLSNLMPPLMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSP 80
Cdd:MTH00111    1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  81 ILALLLALSIWLPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVL 160
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 161 FSGGFNMQTFMVTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMN 240
Cdd:MTH00111  161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 241 TLTAILFLNPAHTNNIPELFSMSLASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLP 320
Cdd:MTH00111  241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                  ...
gi 2476356600 321 PMP 323
Cdd:MTH00111  321 PQL 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 603.43  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600   1 MKTLLSNLMPPLMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSP 80
Cdd:MTH00111    1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  81 ILALLLALSIWLPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVL 160
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 161 FSGGFNMQTFMVTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMN 240
Cdd:MTH00111  161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 241 TLTAILFLNPAHTNNIPELFSMSLASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLP 320
Cdd:MTH00111  241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                  ...
gi 2476356600 321 PMP 323
Cdd:MTH00111  321 PQL 323
NADHdh pfam00146
NADH dehydrogenase;
12-308 3.07e-112

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 327.51  E-value: 3.07e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  12 LMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  92 --LPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVLFSGGFNMQT 169
Cdd:pfam00146  83 avIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 170 FMVTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMNTLTAILFLN 249
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2476356600 250 PAHTNNIPELFSMSLAsKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLW 308
Cdd:pfam00146 243 GWLGPFPLPGLLWFLL-KVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 3-304 4.62e-99

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 294.73  E-value: 4.62e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600   3 TLLSNLMPPLMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPIL 82
Cdd:COG1005     7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  83 ALLLALSIW--LPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVL 160
Cdd:COG1005    87 AFIPALLAFavIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 161 FSGGFNMQTFMVTQE-PMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMM 239
Cdd:COG1005   167 LAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2476356600 240 NTLTAILFL-------NPAHTNNIPELFSMSLasKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLA 304
Cdd:COG1005   247 SALATTLFLggwlgpfPILPLGGLPGILWFLL--KTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 603.43  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600   1 MKTLLSNLMPPLMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSP 80
Cdd:MTH00111    1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  81 ILALLLALSIWLPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVL 160
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 161 FSGGFNMQTFMVTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMN 240
Cdd:MTH00111  161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 241 TLTAILFLNPAHTNNIPELFSMSLASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLP 320
Cdd:MTH00111  241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                  ...
gi 2476356600 321 PMP 323
Cdd:MTH00111  321 PQL 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-322 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 525.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600   1 MKTLLSNLMPPLMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSP 80
Cdd:MTH00134    2 LSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  81 ILALLLALSIWLPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVL 160
Cdd:MTH00134   82 MLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVII 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 161 FSGGFNMQTFMVTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMN 240
Cdd:MTH00134  162 FTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMN 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 241 TLTAILFLNPAHTNNIPELFSMSLASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLP 320
Cdd:MTH00134  242 TLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLP 321


                  ..
gi 2476356600 321 PM 322
Cdd:MTH00134  322 PQ 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-322 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 520.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600   1 MKTLLSNLMPPLMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSP 80
Cdd:MTH00071    1 MMTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  81 ILALLLALSIWLPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVL 160
Cdd:MTH00071   81 TMALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 161 FSGGFNMQTFMVTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMN 240
Cdd:MTH00071  161 LTGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMN 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 241 TLTAILFLNPAHTNNIPELFSMSLASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLP 320
Cdd:MTH00071  241 TLSTILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIP 320


                  ..
gi 2476356600 321 PM 322
Cdd:MTH00071  321 PM 322
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 12-321 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 505.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  12 LMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:MTH00104    7 LLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMW 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  92 LPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVLFSGGFNMQTFM 171
Cdd:MTH00104   87 IPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLI 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 172 VTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMNTLTAILFLNPA 251
Cdd:MTH00104  167 TTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAF 246

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 252 HTNNIPELFSMSLASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLPP 321
Cdd:MTH00104  247 HNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPP 316
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 4-321 6.60e-151

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 425.86  E-value: 6.60e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600   4 LLSNLMPPLMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILA 83
Cdd:MTH00218    1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  84 LLLALSIWLPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVLFSG 163
Cdd:MTH00218   81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 164 GFNMQTFMVTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMNTLT 243
Cdd:MTH00218  161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2476356600 244 AILFLNPAHTnnipelfSMSLASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLPP 321
Cdd:MTH00218  241 VILFLGTSLT-------TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 12-322 3.43e-142

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 404.36  E-value: 3.43e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  12 LMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:MTH00040   11 LSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLW 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  92 LPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVLFSGGFNMQTFM 171
Cdd:MTH00040   91 SLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSIS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 172 VTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMNTLTAILFLN-P 250
Cdd:MTH00040  171 NSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILFLGgG 250

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2476356600 251 AHTNNIPELFSMSLASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLPPM 322
Cdd:MTH00040  251 SPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPPN 322
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 18-305 1.29e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 338.77  E-value: 1.29e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  18 ILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIWLPFPIP 97
Cdd:MTH00143   14 VLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSY 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  98 FPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVLFSGGFNMQTFMVTQEPM 177
Cdd:MTH00143   94 FSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSV 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 178 YLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMNTLTAILFLnpAHTNNIP 257
Cdd:MTH00143  174 WLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFF--GGSSVLF 251

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 2476356600 258 ELFSMSLASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLAL 305
Cdd:MTH00143  252 LLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 4-312 1.94e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 330.58  E-value: 1.94e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600   4 LLSNLMPPLMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILA 83
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  84 LLLALSIWLPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVLFSG 163
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 164 GFNMQTFMVTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMNTLT 243
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2476356600 244 AILFLNpahtnniPELFSMSLASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISM 312
Cdd:MTH00193  241 VLMFLG-------GDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGL 302
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 12-318 1.97e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 330.94  E-value: 1.97e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  12 LMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:MTH00195    9 LIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILW 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  92 LPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVLFSGGFNMQTFM 171
Cdd:MTH00195   89 VPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMV 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 172 VTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMNTLTAILFLNPA 251
Cdd:MTH00195  169 ISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGGG 248

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2476356600 252 HTnnipelfsMSLASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSG 318
Cdd:MTH00195  249 GT--------IIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
12-308 3.07e-112

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 327.51  E-value: 3.07e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  12 LMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  92 --LPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVLFSGGFNMQT 169
Cdd:pfam00146  83 avIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 170 FMVTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMNTLTAILFLN 249
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2476356600 250 PAHTNNIPELFSMSLAsKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLW 308
Cdd:pfam00146 243 GWLGPFPLPGLLWFLL-KVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 5-311 1.90e-109

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 320.44  E-value: 1.90e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600   5 LSNLMPPLMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILAL 84
Cdd:MTH00225    1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  85 LLALSIWLPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVLFSGG 164
Cdd:MTH00225   81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 165 FNMQTFMVTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMNTLTA 244
Cdd:MTH00225  161 YNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2476356600 245 ILFLnpahtNNIPELFSMSLASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHIS 311
Cdd:MTH00225  241 ILFF-----GGFFVTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 12-321 2.18e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 308.19  E-value: 2.18e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  12 LMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:MTH00054    9 LAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAW 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  92 --LPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVLFSGGFNMQT 169
Cdd:MTH00054   89 gvIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTE 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 170 FMVTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMNTLTAILFLN 249
Cdd:MTH00054  169 IVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLG 248

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2476356600 250 PAHTNNIPELF---SMSLASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTALSGLPP 321
Cdd:MTH00054  249 GWLVISGPTSYfsnFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-321 6.66e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 307.43  E-value: 6.66e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600   1 MKTLLSNLMPPLMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSP 80
Cdd:MTH00216    2 MVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  81 ILALLLALSIW--LPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSL 158
Cdd:MTH00216   82 VLSFTLALIVWgvIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 159 VLFSGGFNMQTFMVTQEP-MYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNIL 237
Cdd:MTH00216  162 LLCVGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHII 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 238 MMNTLTAILFLNpAHTNNIPELFSMS--LASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMPTA 315
Cdd:MTH00216  242 LMSCLTTILFLG-GWLSPIKYFKGGAgwFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFG 320


                  ....*.
gi 2476356600 316 LSGLPP 321
Cdd:MTH00216  321 FNGPPP 326
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 3-304 4.62e-99

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 294.73  E-value: 4.62e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600   3 TLLSNLMPPLMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPIL 82
Cdd:COG1005     7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  83 ALLLALSIW--LPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVL 160
Cdd:COG1005    87 AFIPALLAFavIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 161 FSGGFNMQTFMVTQE-PMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMM 239
Cdd:COG1005   167 LAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2476356600 240 NTLTAILFL-------NPAHTNNIPELFSMSLasKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLA 304
Cdd:COG1005   247 SALATTLFLggwlgpfPILPLGGLPGILWFLL--KTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-308 1.16e-95

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 285.93  E-value: 1.16e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600   1 MKTLLSNLMPPLMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSP 80
Cdd:PRK06076    6 PDLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAP 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  81 ILALLLALSIWL--PFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSL 158
Cdd:PRK06076   86 VIAFIPAFLAWAviPFGPELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAV 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 159 VLFSGGFNMQTFMVTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILM 238
Cdd:PRK06076  166 VLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMIL 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2476356600 239 MNTLTAILFLNPAH-----TNNIPELFSMSLasKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLW 308
Cdd:PRK06076  246 VSALITTLFLGGWLppfplGGGIPGAIWFVL--KVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 12-321 3.14e-85

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 260.33  E-value: 3.14e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  12 LMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:MTH00029   14 LIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAW 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  92 LPFPIP--FPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVLFSGGFNMQT 169
Cdd:MTH00029   94 AIVTMDqgVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISE 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 170 FMVTQEPMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMNTLTAILFLN 249
Cdd:MTH00029  174 IVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLG 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 250 P--AHTNNIPELFSMSLA--------------SKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISMP 313
Cdd:MTH00029  254 GwlSPLDGIPTPPEAFSIfeqiasskssfwffTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGIL 333


                  ....*...
gi 2476356600 314 TALSGLPP 321
Cdd:MTH00029  334 IGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 12-312 1.32e-84

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 257.40  E-value: 1.32e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  12 LMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:MTH00010   10 LLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLW 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  92 LPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVLFSGGFNMQTFM 171
Cdd:MTH00010   90 SLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKII 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 172 VTQepmylmfSSWPLMMM------WYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMNTLTAI 245
Cdd:MTH00010  170 MSQ-------YSWILLMIipltvsWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSV 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2476356600 246 LFLNPAHTNNIPElfsMSLASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHISM 312
Cdd:MTH00010  243 FFTSFIPSIFISD---LMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPI 306
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 12-303 4.58e-63

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 201.28  E-value: 4.58e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  12 LMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIW 91
Cdd:MTH00090    3 LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEW 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  92 LPFPIPFPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVLFSGGFN-MQTF 170
Cdd:MTH00090   83 FVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSfVSSF 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 171 MVTQEPMYLMFsswplmmmwYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMNTLTAILFlnp 250
Cdd:MTH00090  163 SLSLFVIYLPF---------LIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLF--- 230

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2476356600 251 ahtnnipelFSMSLASKTMLLSMgFLWIRASYPRFRYDQLMHLLWKNFLPITL 303
Cdd:MTH00090  231 ---------FKFSFLMLFLIFSL-LIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 4-303 1.60e-53

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 178.99  E-value: 1.60e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600   4 LLSNLMPPLMYVIPILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPila 83
Cdd:CHL00032   26 LIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGP--- 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  84 LLLALSIWLPFP-IPFP----LADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSL 158
Cdd:CHL00032  103 SIAVISILLSYLvIPFGyhlvLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 159 VLFSGgfNMQTFMVTQEPMYLMFSSWPL------MMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAE 232
Cdd:CHL00032  183 SLLSN--SLSTVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVAS 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 233 YSNILMMNTLTAILFLNPAHTN----NIPELFSMSLASKTMLLSMG----------FLWI----RASYPRFRYDQLMHLL 294
Cdd:CHL00032  261 YLNLLVSSLFVTVLYLGGWNLSipyiFIPELFEINKTGGVFGTTIGifitlaktylFLFIsittRWTLPRLRMDQLLNLG 340


                  ....*....
gi 2476356600 295 WKNFLPITL 303
Cdd:CHL00032  341 WKFLLPISL 349
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 18-296 1.19e-47

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 162.02  E-value: 1.19e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  18 ILIAVAFFTLIERKVLGYMQLRKGPNIVGPYGLLQPVADGVKLFIKEPIYPLNSSITLFTMSPILALLLALSIWLPFPIP 97
Cdd:MTH00058   14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  98 FPLADLNLGILFLISISSLMVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVLFSGGFNMQTFMVTQEPM 177
Cdd:MTH00058   94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLS 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 178 YLMFssWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMNTLTAILFLNPAhtnnip 257
Cdd:MTH00058  174 VLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGG------ 245

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2476356600 258 elFSMSLASKTMLLsmgFLWIRASYPRFRYDQLMHLLWK 296
Cdd:MTH00058  246 --FVSIMLLFHLLF---FMWARATLPRVRYDYFVNFFWE 279
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
12-308 3.21e-28

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 110.66  E-value: 3.21e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  12 LMYVIPILIAVAFFTLIERKVLGYMQLRKGPnivgpyGLLQPVADGVKLFIKEPIYPLNSSItLFTMSPILALLLALSIW 91
Cdd:COG0650     8 LLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASW-LFRAAPYVALAAMLLAA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600  92 LPFPIPF------PLADLnLGILFLISISSLMvysILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLVLFSGGF 165
Cdd:COG0650    81 LLVPVLTtgpplsFSGDL-IVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGST 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2476356600 166 NMQTFMVTQE---PMYLMFSSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILMMNTL 242
Cdd:COG0650   157 SLSDIVAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSL 236

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2476356600 243 TAILFLnPAHTNNIPELFSMSLASKTMLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLW 308
Cdd:COG0650   237 FVNLFL-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH