|
Name |
Accession |
Description |
Interval |
E-value |
| MCM3 |
cd17754 |
DNA replication licensing factor Mcm3; Mcm3 is a helicase that play an important role in ... |
13-366 |
0e+00 |
|
DNA replication licensing factor Mcm3; Mcm3 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350660 [Multi-domain] Cd Length: 299 Bit Score: 570.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 13 LLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAIPTTGRGSSGVG 92
Cdd:cd17754 1 LLSKSLAPSIYGHEYIKKAILLMLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 93 LTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPVYG 172
Cdd:cd17754 81 LTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 173 RYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHRYrnpkeadgepltmggsyadslafvsnsekk 252
Cdd:cd17754 161 RYDVYKTPMENIGLPDSLLSRFDLLFIVLDDIDEERDRSISEHVLRMHRY------------------------------ 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 253 ketelyekydallhgksrkrhekilsVEFMRKYIHIAK-CMKPKLTEQACEAIANEYSRLRSQEAVESDVARTQPITART 331
Cdd:cd17754 211 --------------------------IKFLRKYIHYAKeRIKPKLTQEAAEYIAEEYADLRNDDNTKTDKARTSPITART 264
|
330 340 350
....*....|....*....|....*....|....*
gi 2491366627 332 LETLIRLSTAHARARMSKTVTMDDAHSAIELVQYA 366
Cdd:cd17754 265 LETLIRLATAHAKARLSKTVDKVDAEVALNLLRFA 299
|
|
| MCM |
smart00350 |
minichromosome maintenance proteins; |
2-368 |
0e+00 |
|
minichromosome maintenance proteins;
Pssm-ID: 214631 [Multi-domain] Cd Length: 509 Bit Score: 533.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 2 KKLAKNNDIFELLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAI 81
Cdd:smart00350 185 RKLSKDPDIYERLARSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLCGDPGTAKSQLLKYVEKTAPRAV 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 82 PTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARC 161
Cdd:smart00350 265 YTTGKGSSAVGLTAAVTRDPETREFTLEAGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARC 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 162 SVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHRYRNPKEADGEpltmggsyad 241
Cdd:smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEEDEAF---------- 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 242 slafvsnsekkketelyekydallhgksrkrhEKILSVEFMRKYIHIAKC-MKPKLTEQACEAIANEYSRLRSQEAvESD 320
Cdd:smart00350 415 --------------------------------EPPLSQEKLRKYIAYAREkIKPKLSEEAADKLVKAYVDLRKEDS-QTE 461
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2491366627 321 VARTQPITARTLETLIRLSTAHARARMSKTVTMDDAHSAIELVQYAYF 368
Cdd:smart00350 462 SRSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESII 509
|
|
| Mcm2 |
COG1241 |
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and ... |
2-371 |
2.21e-147 |
|
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair];
Pssm-ID: 440854 [Multi-domain] Cd Length: 682 Bit Score: 432.69 E-value: 2.21e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 2 KKLAKNNDIFELLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAI 81
Cdd:COG1241 264 KELSKDPDIYEKIIASIAPSIYGYEEIKEAIALQLFGGVPKVLPDGSRIRGDIHILLVGDPGTAKSQLLRYAARLAPRGV 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 82 PTTGRGSSGVGLTAAVTTDQE-TGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNAR 160
Cdd:COG1241 344 YTSGKGSTAAGLTAAAVRDDFgTGRWTLEAGALVLADGGLACIDELDKMREEDRSALHEAMEQQTISIAKAGIVATLNAR 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 161 CSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHRyrnpkeaDGEPLTmggsya 240
Cdd:COG1241 424 CSVLAAANPKYGRFDPYEPIAEQIDLPPTLLSRFDLIFVLRDKPDEERDRELARHILKVHR-------AGELLE------ 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 241 dslAFVSNSEKKKETElyekydallhgksrkrhekiLSVEFMRKYIHIAK-CMKPKLTEQACEAIANEYSRLRSQEAVES 319
Cdd:COG1241 491 ---QEIEEETEEVKPE--------------------IDPDLLRKYIAYARrNVFPVLTEEAKDLIEDFYVDMRKKGEDED 547
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 2491366627 320 DvarTQPITARTLETLIRLSTAHARARMSKTVTMDDAHSAIELVQYaYFKKV 371
Cdd:COG1241 548 S---PVPITARQLEALIRLAEASARMRLSDTVTEEDAERAIRLVDS-CLKDV 595
|
|
| minchrom_main_MCM |
NF040949 |
minichromosome maintenance protein MCM; |
2-371 |
9.26e-138 |
|
minichromosome maintenance protein MCM;
Pssm-ID: 468880 [Multi-domain] Cd Length: 681 Bit Score: 408.16 E-value: 9.26e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 2 KKLAKNNDIFELLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAI 81
Cdd:NF040949 273 LELAKDPWIREKIIASIAPSIYGHWEIKEAIALLLFGGVPKVLPDGTRIRGDIHVLIVGDPGTAKSQLLQYVARLAPRAV 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 82 PTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARC 161
Cdd:NF040949 353 YTSGKGSTAAGLTAAVVRDKLTGEYYLEAGALVLADGGVAVIDEIDKMREEDRSAIHEAMEQQTVSIAKAGIVATLNARA 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 162 SVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHryrnpkeadgepltmggsyad 241
Cdd:NF040949 433 SVLAAGNPKFGRYDPNRSVAENIDLPPTILSRFDLIFVIRDKPNEERDRRLARHILDVH--------------------- 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 242 slafvSNSEKKKEtelyekydallhgksrkrhekILSVEFMRKYIHIA-KCMKPKLTEQACEAIANEYSRLRSQEAVESD 320
Cdd:NF040949 492 -----SGKEKVKP---------------------EIDPDLLKKYIAYArKYVRPKLTEEAKKLIEDFYVEMRKSSKSSED 545
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 2491366627 321 VARTQPITARTLETLIRLSTAHARARMSKTVTMDDAHSAIELvQYAYFKKV 371
Cdd:NF040949 546 PDSPIPITARQLEALIRLSEAHAKMRLKDEVTAEDAERAIRL-MLAFLESV 595
|
|
| MCM |
pfam00493 |
MCM P-loop domain; |
2-220 |
6.09e-133 |
|
MCM P-loop domain;
Pssm-ID: 459830 [Multi-domain] Cd Length: 224 Bit Score: 379.57 E-value: 6.09e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 2 KKLAKNNDIFELLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAI 81
Cdd:pfam00493 6 KELAKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGTRLRGDINVLLVGDPGTAKSQLLKYVEKIAPRAV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 82 PTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARC 161
Cdd:pfam00493 86 YTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALVLADGGVCCIDEFDKMNDEDRVALHEAMEQQTISIAKAGIVATLNARC 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2491366627 162 SVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMH 220
Cdd:pfam00493 166 SILAAANPIFGRYDPKKSIAENINLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH 224
|
|
| PTZ00111 |
PTZ00111 |
DNA replication licensing factor MCM4; Provisional |
3-377 |
4.78e-78 |
|
DNA replication licensing factor MCM4; Provisional
Pssm-ID: 173403 [Multi-domain] Cd Length: 915 Bit Score: 258.00 E-value: 4.78e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 3 KLAKNNDIFELLSKSLAPSIHGHTFVKQAILCLLLGGVE-----KVLPNGT----RLRGDINVLLIGDPSVAKSQLLRYV 73
Cdd:PTZ00111 433 ELSRNPMIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKnssdfNKSPDACykvdNFRGIINVLLCGDPGTAKSQLLHYT 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 74 LNTAPRAIPTTGRGSSGVGLTAAVT-TDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAG 152
Cdd:PTZ00111 513 HLLSPRSIYTSGKSSSSVGLTASIKfNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAG 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 153 IHASLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRmhryrnpkeaDGEP 232
Cdd:PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK----------DFLL 662
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 233 LTMGGSYADSLAFVSNSEKKKETELyekydaLLHGKSRKRHEkilsVEFMRKYIHIAK--CMkPKLTEQACEAIANEYSR 310
Cdd:PTZ00111 663 PHMTGSGNDEDTYDRSNTMHVEDES------LRSEKDYNKND----LDMLRMYIKFSKlhCF-PKLSDEAKKVITREYVK 731
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 311 LR--------------SQEAVESDV------ARTQPITARTLETLIRLSTAHARARMSKTVTMDDAHSAIELVQYAYFKK 370
Cdd:PTZ00111 732 MRqgnfqtsnldelehAQEDDDDDLyyqssgTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSSTFQS 811
|
....*..
gi 2491366627 371 VLEKERG 377
Cdd:PTZ00111 812 LVDPTTG 818
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| MCM3 |
cd17754 |
DNA replication licensing factor Mcm3; Mcm3 is a helicase that play an important role in ... |
13-366 |
0e+00 |
|
DNA replication licensing factor Mcm3; Mcm3 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350660 [Multi-domain] Cd Length: 299 Bit Score: 570.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 13 LLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAIPTTGRGSSGVG 92
Cdd:cd17754 1 LLSKSLAPSIYGHEYIKKAILLMLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 93 LTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPVYG 172
Cdd:cd17754 81 LTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 173 RYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHRYrnpkeadgepltmggsyadslafvsnsekk 252
Cdd:cd17754 161 RYDVYKTPMENIGLPDSLLSRFDLLFIVLDDIDEERDRSISEHVLRMHRY------------------------------ 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 253 ketelyekydallhgksrkrhekilsVEFMRKYIHIAK-CMKPKLTEQACEAIANEYSRLRSQEAVESDVARTQPITART 331
Cdd:cd17754 211 --------------------------IKFLRKYIHYAKeRIKPKLTQEAAEYIAEEYADLRNDDNTKTDKARTSPITART 264
|
330 340 350
....*....|....*....|....*....|....*
gi 2491366627 332 LETLIRLSTAHARARMSKTVTMDDAHSAIELVQYA 366
Cdd:cd17754 265 LETLIRLATAHAKARLSKTVDKVDAEVALNLLRFA 299
|
|
| MCM |
smart00350 |
minichromosome maintenance proteins; |
2-368 |
0e+00 |
|
minichromosome maintenance proteins;
Pssm-ID: 214631 [Multi-domain] Cd Length: 509 Bit Score: 533.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 2 KKLAKNNDIFELLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAI 81
Cdd:smart00350 185 RKLSKDPDIYERLARSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLCGDPGTAKSQLLKYVEKTAPRAV 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 82 PTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARC 161
Cdd:smart00350 265 YTTGKGSSAVGLTAAVTRDPETREFTLEAGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARC 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 162 SVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHRYRNPKEADGEpltmggsyad 241
Cdd:smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEEDEAF---------- 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 242 slafvsnsekkketelyekydallhgksrkrhEKILSVEFMRKYIHIAKC-MKPKLTEQACEAIANEYSRLRSQEAvESD 320
Cdd:smart00350 415 --------------------------------EPPLSQEKLRKYIAYAREkIKPKLSEEAADKLVKAYVDLRKEDS-QTE 461
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2491366627 321 VARTQPITARTLETLIRLSTAHARARMSKTVTMDDAHSAIELVQYAYF 368
Cdd:smart00350 462 SRSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESII 509
|
|
| Mcm2 |
COG1241 |
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and ... |
2-371 |
2.21e-147 |
|
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair];
Pssm-ID: 440854 [Multi-domain] Cd Length: 682 Bit Score: 432.69 E-value: 2.21e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 2 KKLAKNNDIFELLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAI 81
Cdd:COG1241 264 KELSKDPDIYEKIIASIAPSIYGYEEIKEAIALQLFGGVPKVLPDGSRIRGDIHILLVGDPGTAKSQLLRYAARLAPRGV 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 82 PTTGRGSSGVGLTAAVTTDQE-TGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNAR 160
Cdd:COG1241 344 YTSGKGSTAAGLTAAAVRDDFgTGRWTLEAGALVLADGGLACIDELDKMREEDRSALHEAMEQQTISIAKAGIVATLNAR 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 161 CSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHRyrnpkeaDGEPLTmggsya 240
Cdd:COG1241 424 CSVLAAANPKYGRFDPYEPIAEQIDLPPTLLSRFDLIFVLRDKPDEERDRELARHILKVHR-------AGELLE------ 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 241 dslAFVSNSEKKKETElyekydallhgksrkrhekiLSVEFMRKYIHIAK-CMKPKLTEQACEAIANEYSRLRSQEAVES 319
Cdd:COG1241 491 ---QEIEEETEEVKPE--------------------IDPDLLRKYIAYARrNVFPVLTEEAKDLIEDFYVDMRKKGEDED 547
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 2491366627 320 DvarTQPITARTLETLIRLSTAHARARMSKTVTMDDAHSAIELVQYaYFKKV 371
Cdd:COG1241 548 S---PVPITARQLEALIRLAEASARMRLSDTVTEEDAERAIRLVDS-CLKDV 595
|
|
| MCM |
cd17706 |
MCM helicase family; MCM helicases are a family of helicases that play an important role in ... |
13-364 |
3.59e-143 |
|
MCM helicase family; MCM helicases are a family of helicases that play an important role in replication and homologous recombination repair. The heterohexameric ring-shaped Mcm2-7 complex is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases. Mcm8 and Mcm9, form a complex required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350658 [Multi-domain] Cd Length: 311 Bit Score: 408.65 E-value: 3.59e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 13 LLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAIPTTGRGSSGVG 92
Cdd:cd17706 1 ILADSIAPSIYGHEDVKKAVLLQLFGGVQKILEDGTRIRGDIHILLVGDPGTAKSQILKYVLKIAPRGVYTSGKGSSGAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 93 LTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPVYG 172
Cdd:cd17706 81 LTAAVVRDSETGEWYLEAGALVLADGGVCCIDEFDKMKELDRTALHEAMEQQTISIAKAGIVTTLNARCSILAAANPKGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 173 RYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHRYRNPKEadgepltmggsyadslafvsnsEKK 252
Cdd:cd17706 161 RYNPKLSPIENINLPSPLLSRFDLIFVIRDDPDEERDEELAEHIIDLHRGSDPEE----------------------QVK 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 253 KETElyekydallhgksrkrhEKILSVEFMRKYIHIAKCMKPKLTEQACEAIANEYSRLRSqeavESDVARTQPITARTL 332
Cdd:cd17706 219 PEED-----------------GIPIDIELLRKYILYARQIHPKISEEAREKLVRWYVELRK----ESERRSTIPITARQL 277
|
330 340 350
....*....|....*....|....*....|..
gi 2491366627 333 ETLIRLSTAHARARMSKTVTMDDAHSAIELVQ 364
Cdd:cd17706 278 ESVIRLAEAHAKMRLSEVVTEEDVEEAIRLVR 309
|
|
| minchrom_main_MCM |
NF040949 |
minichromosome maintenance protein MCM; |
2-371 |
9.26e-138 |
|
minichromosome maintenance protein MCM;
Pssm-ID: 468880 [Multi-domain] Cd Length: 681 Bit Score: 408.16 E-value: 9.26e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 2 KKLAKNNDIFELLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAI 81
Cdd:NF040949 273 LELAKDPWIREKIIASIAPSIYGHWEIKEAIALLLFGGVPKVLPDGTRIRGDIHVLIVGDPGTAKSQLLQYVARLAPRAV 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 82 PTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARC 161
Cdd:NF040949 353 YTSGKGSTAAGLTAAVVRDKLTGEYYLEAGALVLADGGVAVIDEIDKMREEDRSAIHEAMEQQTVSIAKAGIVATLNARA 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 162 SVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHryrnpkeadgepltmggsyad 241
Cdd:NF040949 433 SVLAAGNPKFGRYDPNRSVAENIDLPPTILSRFDLIFVIRDKPNEERDRRLARHILDVH--------------------- 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 242 slafvSNSEKKKEtelyekydallhgksrkrhekILSVEFMRKYIHIA-KCMKPKLTEQACEAIANEYSRLRSQEAVESD 320
Cdd:NF040949 492 -----SGKEKVKP---------------------EIDPDLLKKYIAYArKYVRPKLTEEAKKLIEDFYVEMRKSSKSSED 545
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 2491366627 321 VARTQPITARTLETLIRLSTAHARARMSKTVTMDDAHSAIELvQYAYFKKV 371
Cdd:NF040949 546 PDSPIPITARQLEALIRLSEAHAKMRLKDEVTAEDAERAIRL-MLAFLESV 595
|
|
| MCM |
pfam00493 |
MCM P-loop domain; |
2-220 |
6.09e-133 |
|
MCM P-loop domain;
Pssm-ID: 459830 [Multi-domain] Cd Length: 224 Bit Score: 379.57 E-value: 6.09e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 2 KKLAKNNDIFELLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAI 81
Cdd:pfam00493 6 KELAKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGTRLRGDINVLLVGDPGTAKSQLLKYVEKIAPRAV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 82 PTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARC 161
Cdd:pfam00493 86 YTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALVLADGGVCCIDEFDKMNDEDRVALHEAMEQQTISIAKAGIVATLNARC 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2491366627 162 SVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMH 220
Cdd:pfam00493 166 SILAAANPIFGRYDPKKSIAENINLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH 224
|
|
| MCM7 |
cd17758 |
DNA replication licensing factor Mcm7; Mcm7 is a helicase that play an important role in ... |
14-366 |
2.34e-128 |
|
DNA replication licensing factor Mcm7; Mcm7 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350664 [Multi-domain] Cd Length: 306 Bit Score: 370.97 E-value: 2.34e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 14 LSKSLAPSIHGHTFVKQAILCLLLGGVEKVlPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAIPTTGRGSSGVGL 93
Cdd:cd17758 2 LAASIAPEIYGHEDVKKALLLLLVGGVDKR-GDGMKIRGDINICLMGDPGVAKSQLLKYICRIAPRSVYTTGRGSSGVGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 94 TAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPVYGR 173
Cdd:cd17758 81 TAAVMKDPVTGEMTLEGGALVLADQGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGITTTLNARTSILAAANPAYGR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 174 YDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHryrnpkeadgepltmggsyadslafvsnsekkk 253
Cdd:cd17758 161 YNPRRSPEQNINLPAALLSRFDLLFLILDKPDRDNDLRLAEHVTYVH--------------------------------- 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 254 etelyekydalLHGKSRKRHEKILSVEFMRKYIHIAKCMKPKLTEQACEAIANEYSRLRSQEAVESDVARTqpiTARTLE 333
Cdd:cd17758 208 -----------QHNKQPDSDFEPLDPKLLRAYIALAKRKRPTVPPALADYIVQAYVEMRQEAKRSKDFTFT---TPRTLL 273
|
330 340 350
....*....|....*....|....*....|...
gi 2491366627 334 TLIRLSTAHARARMSKTVTMDDAHSAIELVQYA 366
Cdd:cd17758 274 AILRLSQALARLRLSDSVEIDDVEEALRLMEMS 306
|
|
| MCM5 |
cd17756 |
DNA replication licensing factor Mcm5; Mcm5 is a helicase that play an important role in ... |
13-364 |
6.97e-125 |
|
DNA replication licensing factor Mcm5; Mcm5 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350662 [Multi-domain] Cd Length: 317 Bit Score: 362.47 E-value: 6.97e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 13 LLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAIPTTGRGSSGVG 92
Cdd:cd17756 1 IISKSIAPSIYGNEDIKKAIACLLFGGSRKRLPDGMRLRGDINVLLLGDPGTAKSQLLKFVEKVAPIGVYTSGKGSSAAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 93 LTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPVYG 172
Cdd:cd17756 81 LTASVMRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 173 RYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHRYRNPKeadgepltmggsyadslafvsnsekk 252
Cdd:cd17756 161 RYDDLKTPGDNIDFQTTILSRFDMIFIVKDKHDEERDITIAKHVINIHASARKA-------------------------- 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 253 ketelyekydallhgKSRKRHEKILSVEFMRKYIHIA--KCMkPKLTEQACEAIANEYSRLRS---QEAVESDVARTQPI 327
Cdd:cd17756 215 ---------------SQSQENEGEIPISKLKRYIAYCraKCA-PRLSEEAAEKLSNHYVTIRKdvrQNELESDNRSSIPI 278
|
330 340 350
....*....|....*....|....*....|....*..
gi 2491366627 328 TARTLETLIRLSTAHARARMSKTVTMDDAHSAIELVQ 364
Cdd:cd17756 279 TVRQLEAIIRISESLAKMELSPIATEKHVEEAIRLFQ 315
|
|
| MCM6 |
cd17757 |
DNA replication licensing factor Mcm6; Mcm6 is a helicase that play an important role in ... |
14-363 |
1.88e-121 |
|
DNA replication licensing factor Mcm6; Mcm6 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350663 [Multi-domain] Cd Length: 307 Bit Score: 353.60 E-value: 1.88e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 14 LSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAIPTTGRGSSGVGL 93
Cdd:cd17757 2 LVRSIAPSIYGHEEVKKGILLMLLGGVHKITREGISLRGDINVCIVGDPSTAKSQFLKYVEEFSPRAVYTSGKASSAAGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 94 TAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPVYGR 173
Cdd:cd17757 82 TAAVVRDEETGDFVIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPVGGR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 174 YDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHRyrnpkeadgepltmggsyadslafvsnsekkK 253
Cdd:cd17757 162 YDRSKSLKQNINISAPIMSRFDLFFVLLDECNEVTDYAIASHIVDLHS-------------------------------K 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 254 ETELYEKYdallhgksrkrhekiLSVEFMRKYIHIAKCMKPKLTEQACEAIANEYSRLRSQEAVESdVARTQPITARTLE 333
Cdd:cd17757 211 REEAIEPP---------------FTAEQLKRYIAYARTFKPKLTKEAKDELVEQYKELRQDDASGS-TRSSYRITVRQLE 274
|
330 340 350
....*....|....*....|....*....|
gi 2491366627 334 TLIRLSTAHARARMSKTVTMDDAHSAIELV 363
Cdd:cd17757 275 SLIRLSEAIARLHCSDEVTPEHVEEAARLL 304
|
|
| MCM_arch |
cd17761 |
archaeal MCM protein; archaeal MCM proteins form a homohexameric ring homologous to the ... |
12-364 |
1.62e-119 |
|
archaeal MCM protein; archaeal MCM proteins form a homohexameric ring homologous to the eukaryotic Mcm2-7 helicase and also function as the replicative helicase at the replication fork
Pssm-ID: 350667 [Multi-domain] Cd Length: 308 Bit Score: 348.67 E-value: 1.62e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 12 ELLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAIPTTGRGSSGV 91
Cdd:cd17761 1 EKIISSIAPSIYGHEDVKEAIALQLFGGVPKVLPDGTRIRGDIHILLVGDPGTAKSQLLKYVSKVAPRAVYTTGKGSTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 92 GLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPVY 171
Cdd:cd17761 81 GLTAAVVRDEGTGEWYLEAGALVLADKGIAVVDEIDKMRKEDRSALHEAMEQQTISIAKAGIVATLNARAAVLAAANPKF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 172 GRYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHRyrnpkeadgepltmggsyadslafvsnsek 251
Cdd:cd17761 161 GRFDSYRPVAEQIDLPPTLLSRFDLIFVLKDTPNEEKDRRLANHILDTHS------------------------------ 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 252 kketelyekydallhGKSRKRHEKILSVEFMRKYIHIA-KCMKPKLTEQACEAIANEYSRLRSQEAVESdvaRTQPITAR 330
Cdd:cd17761 211 ---------------GGEMREIKPEIDPDLLRKYIAYArKNVRPVLTEEAKQLIKDFYVEMRKSGQETP---SPVPITAR 272
|
330 340 350
....*....|....*....|....*....|....
gi 2491366627 331 TLETLIRLSTAHARARMSKTVTMDDAHSAIELVQ 364
Cdd:cd17761 273 QLEALVRLSEASARMRLSQEVTLEDAERAIRIML 306
|
|
| MCM2 |
cd17753 |
DNA replication licensing factor Mcm2; Mcm2 is a helicase that play an important role in ... |
16-363 |
3.89e-119 |
|
DNA replication licensing factor Mcm2; Mcm2 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350659 [Multi-domain] Cd Length: 325 Bit Score: 348.28 E-value: 3.89e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 16 KSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAIPTTGRGSSGVGLTA 95
Cdd:cd17753 4 NSIAPSIYGHDDIKTAIALALFGGVAKNPGGKHRIRGDINVLLLGDPGTAKSQFLKYVEKTAHRAVFTTGQGASAVGLTA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 96 AVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPVYGRYD 175
Cdd:cd17753 84 SVRKDPVTKEWTLEGGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYN 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 176 QYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHRYRNPKeadgepltmggsyadslafvsnsEKKKET 255
Cdd:cd17753 164 PTLTFAQNVNLTEPILSRFDILCVVRDTVDPEEDERLAKFVVGSHVRSHPE-----------------------NDEDRE 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 256 ELYEKYDALLHGKSRkrhEKILSVEFMRKYIHIAKC-MKPKLTEQACEAIANEYSRLRSqeavESDVARTQPITARTLET 334
Cdd:cd17753 221 GEEEKNQRQRPKETK---VEPIPQELLRKYIHYAREkVRPKLNQMDMDKVSRVYADLRK----ESMATGSLPITVRHLES 293
|
330 340
....*....|....*....|....*....
gi 2491366627 335 LIRLSTAHARARMSKTVTMDDAHSAIELV 363
Cdd:cd17753 294 IIRISEAHAKMHLREYVSEEDVDMAIRVM 322
|
|
| MCM4 |
cd17755 |
DNA replication licensing factor Mcm4; Mcm4 is a helicase that play an important role in ... |
13-366 |
7.16e-109 |
|
DNA replication licensing factor Mcm4; Mcm4 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350661 [Multi-domain] Cd Length: 309 Bit Score: 321.69 E-value: 7.16e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 13 LLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPN-GTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAIPTTGRGSSGV 91
Cdd:cd17755 1 RLARSIAPSIYELEDVKKGILLQLFGGTRKDFTKtGGKYRGDINILLCGDPGTSKSQLLQYVHKISPRGVYTSGKGSSAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 92 GLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPVY 171
Cdd:cd17755 81 GLTAYVTRDPDTKQLVLESGALVLSDGGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIITTLNARTSILASANPIG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 172 GRYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHRYRNPKEADGEpltmggsyadslafvsnsek 251
Cdd:cd17755 161 SRYNPKLTVVENIDLPPTLLSRFDLIYLVLDKVDEKYDRRLAKHLVSLYLEDTPEHIQDE-------------------- 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 252 kketelyekydallhgksrkrhekILSVEFMRKYIHIAKC-MKPKLTEQACEAIANEYSRLRSqeaVESDVARTQPITAR 330
Cdd:cd17755 221 ------------------------VLDVEVLTDYISYAREhIHPKLSEEAAQELVQAYVDMRK---MGSDARKRITATPR 273
|
330 340 350
....*....|....*....|....*....|....*.
gi 2491366627 331 TLETLIRLSTAHARARMSKTVTMDDAHSAIELVQYA 366
Cdd:cd17755 274 QLESLIRLAEAHAKMRLSNVVEAEDVEEAVRLIREA 309
|
|
| PTZ00111 |
PTZ00111 |
DNA replication licensing factor MCM4; Provisional |
3-377 |
4.78e-78 |
|
DNA replication licensing factor MCM4; Provisional
Pssm-ID: 173403 [Multi-domain] Cd Length: 915 Bit Score: 258.00 E-value: 4.78e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 3 KLAKNNDIFELLSKSLAPSIHGHTFVKQAILCLLLGGVE-----KVLPNGT----RLRGDINVLLIGDPSVAKSQLLRYV 73
Cdd:PTZ00111 433 ELSRNPMIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKnssdfNKSPDACykvdNFRGIINVLLCGDPGTAKSQLLHYT 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 74 LNTAPRAIPTTGRGSSGVGLTAAVT-TDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAG 152
Cdd:PTZ00111 513 HLLSPRSIYTSGKSSSSVGLTASIKfNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAG 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 153 IHASLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRmhryrnpkeaDGEP 232
Cdd:PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK----------DFLL 662
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 233 LTMGGSYADSLAFVSNSEKKKETELyekydaLLHGKSRKRHEkilsVEFMRKYIHIAK--CMkPKLTEQACEAIANEYSR 310
Cdd:PTZ00111 663 PHMTGSGNDEDTYDRSNTMHVEDES------LRSEKDYNKND----LDMLRMYIKFSKlhCF-PKLSDEAKKVITREYVK 731
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 311 LR--------------SQEAVESDV------ARTQPITARTLETLIRLSTAHARARMSKTVTMDDAHSAIELVQYAYFKK 370
Cdd:PTZ00111 732 MRqgnfqtsnldelehAQEDDDDDLyyqssgTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSSTFQS 811
|
....*..
gi 2491366627 371 VLEKERG 377
Cdd:PTZ00111 812 LVDPTTG 818
|
|
| MCM9 |
cd17760 |
DNA helicase Mcm9; Mcm9 plays an important role homologous recombination repair. It forms a ... |
13-366 |
9.89e-78 |
|
DNA helicase Mcm9; Mcm9 plays an important role homologous recombination repair. It forms a complex with Mcm8 that is required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350666 [Multi-domain] Cd Length: 299 Bit Score: 241.68 E-value: 9.89e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 13 LLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTRLRGDINVLLIGDPSVAKSQLLRYVLNTAPRAIPTTGRGSSGVG 92
Cdd:cd17760 1 EILASLCPQVFGLYNVKLAVAMVLAGGVQRIDASGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTAGIGSTSAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 93 LTaaVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPvYG 172
Cdd:cd17760 81 LT--VTAVKDGGEWNLEAGALVLADGGLCCIDEFNSLKEHDRTSIHEAMEQQTISVAKAGLVCKLNTRTTILAATNP-KG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 173 RYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVrmhryrnpkEADGEPltmggsyadslafvsnsekk 252
Cdd:cd17760 158 QYDPNESISVNIALASPLLSRFDLVLVLLDTKNEDWDRIISSFIL---------ENKGEP-------------------- 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 253 ketelyekydallhgksrKRHEKILSVEFMRKYIHIAKCMKPKLTEQAcEAIANEYSRLRSQeaveSDVARTQPITARTL 332
Cdd:cd17760 209 ------------------SKSSKLWSMEKMRTYFCLIKNLRPVLSDEA-NAILLRYYQLQRQ----SDCRNAARTTIRML 265
|
330 340 350
....*....|....*....|....*....|....
gi 2491366627 333 ETLIRLSTAHARARMSKTVTMDDAHSAIELVQYA 366
Cdd:cd17760 266 ESLIRLAEAHARLMFRETVTEEDAITVVSVMESS 299
|
|
| MCM8 |
cd17759 |
DNA helicase Mcm8; Mcm8 plays an important role homologous recombination repair. It forms a ... |
13-366 |
5.53e-74 |
|
DNA helicase Mcm8; Mcm8 plays an important role homologous recombination repair. It forms a complex with Mcm9 that is required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350665 [Multi-domain] Cd Length: 289 Bit Score: 231.65 E-value: 5.53e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 13 LLSKSLAPSIHGHTFVKQAILCLLLGGVEKVLPNGTR--LRGDINVLLIGDPSVAKSQLLRYVLNTAPRAIPTTGRGSSG 90
Cdd:cd17759 1 LIVNSLCPAIYGHELVKAGLLLSLFGGKQKYADDKNRipIRGDPHVLIVGDPGLGKSQMLQAACNIAPRGVYVCGNTTTT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 91 VGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDiDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPV 170
Cdd:cd17759 81 SGLTVTLTKDGRSGDFALEAGALVLGDQGICGIDEFDKMGS-QHQALLEAMEQQSVSLAKAGVVCSLPARTSVIAAANPV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 171 YGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDIDQMISDHVVRMHRYRnpkeadgepltmggSYAdslafvsnse 250
Cdd:cd17759 160 GGHYNKGKTVSENLKMGPALLSRFDLVFILLDTPSEEHDHLLSEHHQLLRKYI--------------SYA---------- 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 251 kkketelyekydallhgksrkrhekilsvefmRKYIHiakcmkPKLTEQACEAIANEYSRLRSQeaveSDVARTQPITAR 330
Cdd:cd17759 216 --------------------------------RQYVN------PVLSKDASEALQEFYLELRKQ----NQLADSSPITTR 253
|
330 340 350
....*....|....*....|....*....|....*.
gi 2491366627 331 TLETLIRLSTAHARARMSKTVTMDDAHSAIELVQYA 366
Cdd:cd17759 254 QLESLIRLTEARARLELREEATKEDAEDVIEIMKES 289
|
|
| MCM_lid |
pfam17855 |
MCM AAA-lid domain; This entry represents the AAA-lid domain found in MCM proteins. |
280-364 |
7.51e-22 |
|
MCM AAA-lid domain; This entry represents the AAA-lid domain found in MCM proteins.
Pssm-ID: 465534 [Multi-domain] Cd Length: 86 Bit Score: 88.75 E-value: 7.51e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 280 EFMRKYIHIAK-CMKPKLTEQACEAIANEYSRLRSQEaveSDVARTQPITARTLETLIRLSTAHARARMSKTVTMDDAHS 358
Cdd:pfam17855 1 ELLRKYIAYAReKIKPKLSEEAREKLVDAYVELRKES---TGSGSSIPITVRQLESLIRLSEAHAKMRLSEIVTEEDVEE 77
|
....*.
gi 2491366627 359 AIELVQ 364
Cdd:pfam17855 78 AIRLLK 83
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
28-202 |
4.77e-06 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 47.85 E-value: 4.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 28 VKQAILCLLLGGvekvlpngtrlrgdiNVLLIGDPSVAKSQLLR---YVLNTAPRAIPTTgrgssgVGLTAA-VT----T 99
Cdd:COG0714 21 IELVLIALLAGG---------------HLLLEGVPGVGKTTLAKalaRALGLPFIRIQFT------PDLLPSdILgtyiY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 100 DQETGERRLEAGAmVLAdrGVVCIDEfdkmsdIDRT------AIHEVMEQGRVTIskAGIHASLNARCSVLAAANPVygr 173
Cdd:COG0714 80 DQQTGEFEFRPGP-LFA--NVLLADE------INRAppktqsALLEAMEERQVTI--PGGTYKLPEPFLVIATQNPI--- 145
|
170 180 190
....*....|....*....|....*....|..
gi 2491366627 174 ydqyktpmENIG---LQDSLLSRFdLLFVMLD 202
Cdd:COG0714 146 --------EQEGtypLPEAQLDRF-LLKLYIG 168
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
111-169 |
1.76e-05 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 45.22 E-value: 1.76e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2491366627 111 GAMVLADRGVVCIDEfdkMSDIDRTAI---HEVMEQGRVTISKAGIHASLNARCSVLAAANP 169
Cdd:pfam01078 100 GEISLAHNGVLFLDE---LPEFKRRVLeslRQPLEDGEITISRARAKVTFPARFQLVAAMNP 158
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
55-194 |
7.54e-05 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 42.28 E-value: 7.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 55 NVLLIGDPSVAKSQLLRYVLntapRAIptTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADR---------GVVCIDE 125
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLA----AAL--SNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGplvraaregEIAVLDE 74
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2491366627 126 FDKMSDIDRTAIHEVMEQGRVTISKAG--IHASLNARcSVLAAANPVYGRydqyktPMEnigLQDSLLSRF 194
Cdd:pfam07728 75 INRANPDVLNSLLSLLDERRLLLPDGGelVKAAPDGF-RLIATMNPLDRG------LNE---LSPALRSRF 135
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
55-200 |
4.42e-04 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 40.21 E-value: 4.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2491366627 55 NVLLIGDPSVAKSQLLRYVLNTAPRaipttgRGSSGVGLTAAVTT-------DQETGERRLEAGAMVLADRGVVCIDEFD 127
Cdd:cd00009 21 NLLLYGPPGTGKTTLARAIANELFR------PGAPFLYLNASDLLeglvvaeLFGHFLVRLLFELAEKAKPGVLFIDEID 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2491366627 128 KMSDIDRTAIHEVMEQGRVTISKagihaslNARCSVLAAANpvygrydqyktPMENIGLQDSLLSRFDLLFVM 200
Cdd:cd00009 95 SLSRGAQNALLRVLETLNDLRID-------RENVRVIGATN-----------RPLLGDLDRALYDRLDIRIVI 149
|
|
| YifB |
COG0606 |
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational ... |
111-169 |
1.56e-03 |
|
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440371 [Multi-domain] Cd Length: 502 Bit Score: 40.41 E-value: 1.56e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2491366627 111 GAMVLADRGVVCIDEfdkMSDIDRTAIhEV----MEQGRVTISKAGIHASLNARCSVLAAANP 169
Cdd:COG0606 290 GEISLAHNGVLFLDE---LPEFSRRVL-EAlrqpLEDGEVTISRANGSVTYPARFQLVAAMNP 348
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