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Conserved domains on  [gi|2522682351|gb|WJG36880|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Oedipoda schochii]

Protein Classification

complex I subunit 1 family protein( domain architecture ID 103)

complex I subunit 1 family protein similar to NADH dehydrogenase subunit 1, which is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

EC:  7.1.1.-
Gene Ontology:  GO:0016655|GO:0016020
PubMed:  23417064|24059520
SCOP:  4005664

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06076 super family cl00469
NADH-quinone oxidoreductase subunit NuoH;
5-123 5.47e-46

NADH-quinone oxidoreductase subunit NuoH;


The actual alignment was detected with superfamily member MTH00193:

Pssm-ID: 469782  Cd Length: 306  Bit Score: 150.30  E-value: 5.47e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   5 LIMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFS 84
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2522682351  85 LMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVM 119
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-123 5.47e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 150.30  E-value: 5.47e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   5 LIMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFS 84
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2522682351  85 LMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVM 119
NADHdh pfam00146
NADH dehydrogenase;
13-123 7.74e-23

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 90.22  E-value: 7.74e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351  13 FFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFSLMISLFIW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2522682351  93 SIFPYMTYM--CSFSYGFLFFLCCTSLSVYTLM 123
Cdd:pfam00146  83 AVIPFGPGLvlADLNVGILYILALSSLGVYGIL 115
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-123 5.47e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 150.30  E-value: 5.47e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   5 LIMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFS 84
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2522682351  85 LMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVM 119
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 6-123 1.32e-37

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 129.00  E-value: 1.32e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   6 IMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFSL 85
Cdd:MTH00225    1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2522682351  86 MISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00225   81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTIL 118
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 6-123 8.52e-32

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 113.81  E-value: 8.52e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   6 IMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFSL 85
Cdd:MTH00143    1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2522682351  86 MISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00143   81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVL 118
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 5-123 2.70e-28

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 104.61  E-value: 2.70e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   5 LIMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFS 84
Cdd:MTH00218    1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2522682351  85 LMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00218   81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSIL 119
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 7-123 9.60e-28

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 103.55  E-value: 9.60e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   7 MFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFSLM 86
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2522682351  87 ISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSIL 117
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 5-123 1.00e-27

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 103.28  E-value: 1.00e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   5 LIMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFS 84
Cdd:MTH00195    1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2522682351  85 LMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00195   81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSIL 119
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-123 1.35e-27

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 103.15  E-value: 1.35e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   1 MLYDLIMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFS 80
Cdd:MTH00134    1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2522682351  81 PIFSLMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00134   81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSIL 123
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 5-123 2.25e-27

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 102.28  E-value: 2.25e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   5 LIMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFS 84
Cdd:MTH00111    4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2522682351  85 LMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00111   84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSIL 122
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 5-123 1.38e-26

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 100.47  E-value: 1.38e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   5 LIMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFS 84
Cdd:MTH00071    4 LISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMA 83

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2522682351  85 LMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00071   84 LTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSIL 122
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 3-123 1.97e-26

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 100.05  E-value: 1.97e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   3 YDLIMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPI 82
Cdd:MTH00040    1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2522682351  83 FSLMISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00040   81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALL 121
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-123 1.71e-25

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 97.50  E-value: 1.71e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   1 MLYDLIMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFS 80
Cdd:MTH00216    1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2522682351  81 PIFSLMISLFIWSIFPYM--TYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00216   81 PVLSFTLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAIL 125
NADHdh pfam00146
NADH dehydrogenase;
13-123 7.74e-23

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 90.22  E-value: 7.74e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351  13 FFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFSLMISLFIW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2522682351  93 SIFPYMTYM--CSFSYGFLFFLCCTSLSVYTLM 123
Cdd:pfam00146  83 AVIPFGPGLvlADLNVGILYILALSSLGVYGIL 115
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 5-123 1.39e-22

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 89.79  E-value: 1.39e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   5 LIMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFS 84
Cdd:MTH00054    1 MGIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILS 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2522682351  85 LMISLFIWSIFPYMT--YMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00054   81 LTLAFIAWGVIPYGEgvVLSDLGIGILYLFAVSSISVYAVL 121
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 6-121 4.31e-22

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 88.30  E-value: 4.31e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   6 IMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFSL 85
Cdd:MTH00010    3 ISFFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSL 82

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2522682351  86 MISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYT 121
Cdd:MTH00010   83 ILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYT 118
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
5-123 1.27e-20

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 84.47  E-value: 1.27e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   5 LIMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFS 84
Cdd:PRK06076    9 LLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIA 88

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2522682351  85 LMISLFIWSIFPYMTY--MCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:PRK06076   89 FIPAFLAWAVIPFGPElvIADLNVGILYILAISSLGVYGVI 129
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 11-123 1.77e-18

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 78.02  E-value: 1.77e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351  11 NFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFSLMISLF 90
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2522682351  91 IWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTL 113
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 2-123 2.38e-18

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 78.52  E-value: 2.38e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   2 LYDLIMFILNFFFLVICVLISVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSP 81
Cdd:MTH00029    3 IYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAP 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2522682351  82 IFSLMISLFIWSI--FPYMTYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00029   83 IISFTLAILAWAIvtMDQGVFLSDLDVGVLYFLAISSLSVYAIL 126
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 6-123 1.87e-11

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 59.17  E-value: 1.87e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522682351   6 IMFILNFFFLVICVLIsVAFLVLLERSVLGYIQIRKGPNSVGFLGVLQSFSDAVKLISKEQPIPLKSNYFLYYFSPIFSL 85
Cdd:MTH00058    2 FGLVSGLEGLLIILLL-VAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2522682351  86 MISLFIWSIFPYMTYMCSFSYGFLFFLCCTSLSVYTLM 123
Cdd:MTH00058   81 LLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLL 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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