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Conserved domains on  [gi|2522767747|gb|WJH18389|]
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NADH-ubiquinone oxidoreductase chain 2, partial (mitochondrion) [Chrysococcyx megarhynchus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl33352
NADH dehydrogenase subunit 2; Provisional
 1-97 2.83e-38

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00112:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 130.33  E-value: 2.83e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   1 QTRKILAFSSISHLGWMAIIITYNPNLTMLNFYVYSIMTIAVFLTLNMTKTMKLSTMMTSWTKTPMLNATLMLTLLSLAG 80
Cdd:MTH00112  174 QLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAG 253

                          90
                  ....*....|....*..
gi 2522767747  81 LPPLTGFMPKWLIIYDL 97
Cdd:MTH00112  254 LPPLTGFMPKWLILQEL 270
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-97 2.83e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 130.33  E-value: 2.83e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   1 QTRKILAFSSISHLGWMAIIITYNPNLTMLNFYVYSIMTIAVFLTLNMTKTMKLSTMMTSWTKTPMLNATLMLTLLSLAG 80
Cdd:MTH00112  174 QLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAG 253

                          90
                  ....*....|....*..
gi 2522767747  81 LPPLTGFMPKWLIIYDL 97
Cdd:MTH00112  254 LPPLTGFMPKWLILQEL 270
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 3-95 8.42e-10

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 53.58  E-value: 8.42e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   3 RKILAFSSISHLGWMAI-IITYNPN-LTMLNFY--VYSIMTIAVFLTLN-MTKTMKLSTMMTSW----TKTPMLNATLML 73
Cdd:COG1007   294 KRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFAVILlLSRKGGEAEEIEDLaglaRRSPLLALAMTI 373

                          90       100
                  ....*....|....*....|..
gi 2522767747  74 TLLSLAGLPPLTGFMPKWLIIY 95
Cdd:COG1007   374 FLLSLAGIPPTAGFFGKFYVFS 395
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 3-95 3.04e-08

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 49.23  E-value: 3.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   3 RKILAFSSISHLGWMAIII----TYNPNLTMLNFYVYSIMTIAVFL-----TLNMTKTMKLSTMMTSWTKTPMLNATLML 73
Cdd:pfam00361 172 KRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAKTMPILALVFLV 251

                          90       100
                  ....*....|....*....|..
gi 2522767747  74 TLLSLAGLPPLTGFMPKWLIIY 95
Cdd:pfam00361 252 AMLSLAGLPPTAGFLGKFLILA 273
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-97 2.83e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 130.33  E-value: 2.83e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   1 QTRKILAFSSISHLGWMAIIITYNPNLTMLNFYVYSIMTIAVFLTLNMTKTMKLSTMMTSWTKTPMLNATLMLTLLSLAG 80
Cdd:MTH00112  174 QLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAG 253

                          90
                  ....*....|....*..
gi 2522767747  81 LPPLTGFMPKWLIIYDL 97
Cdd:MTH00112  254 LPPLTGFMPKWLILQEL 270
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-97 1.97e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 128.00  E-value: 1.97e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   1 QTRKILAFSSISHLGWMAIIITYNPNLTMLNFYVYSIMTIAVFLTLNMTKTMKLSTMMTSWTKTPMLNATLMLTLLSLAG 80
Cdd:MTH00135  173 QLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGG 252

                          90
                  ....*....|....*..
gi 2522767747  81 LPPLTGFMPKWLIIYDL 97
Cdd:MTH00135  253 LPPLTGFMPKWLILQEL 269
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-97 1.31e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 110.40  E-value: 1.31e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   1 QTRKILAFSSISHLGWMAIIITYNPNLTMLNFYVYSIMTIAVFLTLNMTKTMKLSTMMTSWTKTPMLNATLMLTLLSLAG 80
Cdd:MTH00070  174 QLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGG 253

                          90
                  ....*....|....*..
gi 2522767747  81 LPPLTGFMPKWLIIYDL 97
Cdd:MTH00070  254 LPPTTGFIPKWLILQEL 270
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-97 1.76e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 104.54  E-value: 1.76e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   1 QTRKILAFSSISHLGWMAIIITYNPNLTMLNFYVYSIMTIAVFLTLNMTKTMKLSTMMTSWTKTPMLNATLMLTLLSLAG 80
Cdd:MTH00105  174 QLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGG 253

                          90
                  ....*....|....*..
gi 2522767747  81 LPPLTGFMPKWLIIYDL 97
Cdd:MTH00105  254 LPPLTGFMPKWMIIQEL 270
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-97 3.02e-23

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 90.76  E-value: 3.02e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   1 QTRKILAFSSISHLGWMAIIITYNPNLTMLNFYVYSIMTIAVFLTLNMTKTMKLSTMMTSWTKTPMLNATLMLTLLSLAG 80
Cdd:MTH00041  174 QTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGG 253

                          90
                  ....*....|....*..
gi 2522767747  81 LPPLTGFMPKWLIIYDL 97
Cdd:MTH00041  254 LPPLTGFLNKFISLYCL 270
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-94 4.22e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 85.02  E-value: 4.22e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   1 QTRKILAFSSISHLGWMAIIITYNPNLTMLNFYVYSIMTIAVFLTLNMTKTMKLSTMMTSWTKTPMLNATLMLTLLSLAG 80
Cdd:MTH00200  174 QLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGG 253

                          90
                  ....*....|....
gi 2522767747  81 LPPLTGFMPKWLII 94
Cdd:MTH00200  254 LPPLTGFFPKWLIL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 3-97 5.71e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 65.23  E-value: 5.71e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   3 RKILAFSSISHLGWMAIIITYNPNLTMLNFYVYSIMTIAVFLTLNMTKTMKLSTMMTSWTKTPMLNATLMLTLLSLAGLP 82
Cdd:MTH00160  168 RKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLP 247

                          90
                  ....*....|....*
gi 2522767747  83 PLTGFMPKWLIIYDL 97
Cdd:MTH00160  248 PFLGFLPKWIIIQLL 262
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-97 7.62e-13

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 62.10  E-value: 7.62e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   1 QTRKILAFSSISHLGWMAIIITYNPNLTMLNFYVYSIMTIAVFLTLNMTKTMKLSTMMTSWTKTPMLNATLMLTLLSLAG 80
Cdd:MTH00011  170 QLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGG 249

                          90
                  ....*....|....*..
gi 2522767747  81 LPPLTGFMPKWLIIYDL 97
Cdd:MTH00011  250 LPPFTGFMPKLMAIETL 266
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 3-97 2.44e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 60.84  E-value: 2.44e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   3 RKILAFSSISHLGWMAIIITYNPNLTMLNFYVYSIMTIAVFLTLNMTKTMKLSTMMTSWTKTPMLNATLMLTLLSLAGLP 82
Cdd:MTH00197  161 RQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLP 240

                          90
                  ....*....|....*
gi 2522767747  83 PLTGFMPKWLIIYDL 97
Cdd:MTH00197  241 PLSGFFLKWLILTSL 255
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-95 1.22e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 58.74  E-value: 1.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   1 QTRKILAFSSISHLGWMAIIITYNPNLTMLNFYVYSIMTIAVFLTLNMTKTMKLStMMTSWTKTPMLNATLMLTLLSLAG 80
Cdd:MTH00144  167 QVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMK-DLGSLKPSYKTGLSIISLLLSLGG 245

                          90
                  ....*....|....*
gi 2522767747  81 LPPLTGFMPKWLIIY 95
Cdd:MTH00144  246 LPPFLGFCSKLLVLI 260
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 3-95 8.42e-10

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 53.58  E-value: 8.42e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   3 RKILAFSSISHLGWMAI-IITYNPN-LTMLNFY--VYSIMTIAVFLTLN-MTKTMKLSTMMTSW----TKTPMLNATLML 73
Cdd:COG1007   294 KRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFAVILlLSRKGGEAEEIEDLaglaRRSPLLALAMTI 373

                          90       100
                  ....*....|....*....|..
gi 2522767747  74 TLLSLAGLPPLTGFMPKWLIIY 95
Cdd:COG1007   374 FLLSLAGIPPTAGFFGKFYVFS 395
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 3-94 1.56e-08

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 50.02  E-value: 1.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   3 RKILAFSSISHLGWMAIIITYNPN----LTMLNFYVYSIMTIAVF---LTLNMTKTMKLSTMMTSwTKTPMLNATLMLTL 75
Cdd:MTH00199  272 KRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-RKNPVIALTLALTF 350

                          90
                  ....*....|....*....
gi 2522767747  76 LSLAGLPPLTGFMPKWLII 94
Cdd:MTH00199  351 LSIAGIPPLAGFLSKWLIL 369
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 3-95 3.04e-08

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 49.23  E-value: 3.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   3 RKILAFSSISHLGWMAIII----TYNPNLTMLNFYVYSIMTIAVFL-----TLNMTKTMKLSTMMTSWTKTPMLNATLML 73
Cdd:pfam00361 172 KRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAKTMPILALVFLV 251

                          90       100
                  ....*....|....*....|..
gi 2522767747  74 TLLSLAGLPPLTGFMPKWLIIY 95
Cdd:pfam00361 252 AMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-94 2.91e-07

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 46.56  E-value: 2.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   1 QTR--KILAFSSISHLGWMAI------IITYNPNLTMLNFYVY-SIMTIAVFLTLNMTKTMKLSTMMTSwTKTPMLNATL 71
Cdd:MTH00196  173 QTKikRLLAYSGIGHMGFVLWgieigsFESIQASLVYLFIYIImSICVFSIILALNVYKNLIIEFSGLS-RRLPILAITL 251

                          90       100
                  ....*....|....*....|...
gi 2522767747  72 MLTLLSLAGLPPLTGFMPKWLII 94
Cdd:MTH00196  252 ALTFLSIAGIPPLVGFLGKWLIL 274
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
5-95 2.05e-06

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 44.04  E-value: 2.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   5 ILAFSSISHLGWM---AIIITYNPNLTMLnFY--VYSIMTIAVFLTLN-MTKTMKLSTMMTSWT----KTPMLNATLMLT 74
Cdd:PRK05777  297 LLAYSSIAHAGYLlvgLAAGTAEGYSAVL-FYllAYLFMTLGAFGVISlLRRKGGEAESISDFAglskRSPLLAAVMTIF 375

                          90       100
                  ....*....|....*....|.
gi 2522767747  75 LLSLAGLPPLTGFMPKWLIIY 95
Cdd:PRK05777  376 MLSLAGIPPTAGFWGKFYVFE 396
ndhB CHL00049
NADH dehydrogenase subunit 2
 3-90 1.59e-05

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 41.53  E-value: 1.59e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   3 RKILAFSSISHLGWMAI-IITYNPN------LTMLNFYVYsiMTIAVFLTLNM----TKTMKLSTMMTSWTKTPMLNATL 71
Cdd:CHL00049  305 KRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYIF--MNLGTFACIVLfglrTGTDNIRDYAGLYTKDPFLALSL 382

                          90
                  ....*....|....*....
gi 2522767747  72 MLTLLSLAGLPPLTGFMPK 90
Cdd:CHL00049  383 ALCLLSLGGIPPLAGFFGK 401
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 3-94 2.13e-05

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 41.29  E-value: 2.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   3 RKILAFSSISHLGWMAIIITYNPNLTMLNFYVY----SIMTIAVFLT----LNMTKTMKLSTMMTSWTKTPMLNATLMLT 74
Cdd:COG0651   297 KRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAAFLIG 376

                          90       100
                  ....*....|....*....|
gi 2522767747  75 LLSLAGLPPLTGFMPKWLII 94
Cdd:COG0651   377 ALALAGLPPLSGFVSKWLLL 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 3-94 4.46e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 40.06  E-value: 4.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   3 RKILAFSSISHLGWMAI-IITYNPN------LTMLNFyvySIMTIAVFLTLNM----TKTMKLSTMMTSWTKTPMLNATL 71
Cdd:COG1008   300 KRLIAYSSVSHMGFVLLgIFALNPLglqgavLQMVSH---GLITAALFLLVGVlydrTHTRDIADLGGLAKRMPVLAALF 376

                          90       100
                  ....*....|....*....|...
gi 2522767747  72 MLTLLSLAGLPPLTGFMPKWLII 94
Cdd:COG1008   377 LLAALASLGLPGTSGFVGEFLVL 399
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 3-93 1.29e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 38.82  E-value: 1.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   3 RKILAFSSISHLGWMAIIITYNPNLT----MLNFYVYSIMTIAVFLTLNM----TKTMKLSTMMTSWTKTPMLNATLMLT 74
Cdd:PRK08668  297 KKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVA 376

                          90
                  ....*....|....*....
gi 2522767747  75 LLSLAGLPPLTGFMPKWLI 93
Cdd:PRK08668  377 IISLAGIPPMSGFASKWLI 395
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
3-90 7.94e-04

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 36.57  E-value: 7.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   3 RKILAFSSISHLGWMAI--IITYNPNLTMLNFY--VYSIMTIAVFLTLNM----TKTMKLSTMMTSWTKTPMLNATLMLT 74
Cdd:PRK02504  301 KRMLAYSSIGQAGFVMIglVAGTEAGYASMVFYllAYLFMNLGAFACVILfslrTGTDQISDYAGLYQKDPLLTLGLSLC 380

                          90
                  ....*....|....*.
gi 2522767747  75 LLSLAGLPPLTGFMPK 90
Cdd:PRK02504  381 LLSLGGIPPLAGFFGK 396
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-94 8.73e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 36.64  E-value: 8.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   3 RKILAFSSISHLGWMAIIITYNPNLTMLNFYVY----SIMTIAVFLT-------LNMTKTMKLSTMmtsWTKTPMLNATL 71
Cdd:PRK12662  304 KRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVsgsisyhFGTTKLEDCLNL---WKSMPKITLAF 380

                          90       100
                  ....*....|....*....|...
gi 2522767747  72 MLTLLSLAGLPPLTGFMPKWLII 94
Cdd:PRK12662  381 VLLSLSLIGMPPTSGFVAKWYIL 403
PRK12650 PRK12650
DUF4040 family protein;
3-90 3.52e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 35.02  E-value: 3.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   3 RKILAFSSISHLGWMAIIITYNPNLTMLNFYVYSI----------MTIAVflTLNMTKTMKLSTMMTSWTKTPMLNATLM 72
Cdd:PRK12650  297 KKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLahalfksslfMLIGV--VDHQAGTRDIRRLGSLWRRMPFTFVSVT 374

                          90
                  ....*....|....*...
gi 2522767747  73 LTLLSLAGLPPLTGFMPK 90
Cdd:PRK12650  375 IAALSMAAVPPLFGFVSK 392
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 4-95 6.43e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 33.97  E-value: 6.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   4 KILAFSSISHLGWMAIIITYNPNLTMLNFyvysIMTIAVF---L------------TLNMTKTMKLstmmtsWTKTPMLN 68
Cdd:COG1009   301 RVLAYSTVSQLGYMFLALGVGAYVAALFH----LLTHAFFkalLflgagsvihatgTRDIRKMGGL------RKKMPITA 370

                          90       100
                  ....*....|....*....|....*..
gi 2522767747  69 ATLMLTLLSLAGLPPLTGFMPKWLIIY 95
Cdd:COG1009   371 ITFLIGALSLAGIPPFAGFFSKEAILE 397
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-94 8.29e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 33.70  E-value: 8.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   2 TRKILAFSSISHLGWMAIIITYNPNLTMLN--FYV--YSIMTIAVFLTLNM----TKTMKLSTMMTSWTKTPMLNATLML 73
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAievtYGTRRLSELSGLGRRMPLTAAAFAV 374

                          90       100
                  ....*....|....*....|.
gi 2522767747  74 TLLSLAGLPPLTGFMPKWLII 94
Cdd:PRK08375  375 ASLSLIGVPPTSGFVSKWYLV 395
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-94 9.34e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 33.77  E-value: 9.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522767747   2 TRKILAFSSISHLGWMAIIITYNPNLTMLNFYVYSI--MTI--AVFL----TLNMTKTMKLSTMMTSWTKTPMLNATLML 73
Cdd:PRK07691  299 IKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIhdMIVkaALFLligiMIKITGTTDLKKMGGLIKRYPVLGWMFFI 378

                          90       100
                  ....*....|....*....|.
gi 2522767747  74 TLLSLAGLPPLTGFMPKWLII 94
Cdd:PRK07691  379 AALSLAGIPPLSGFYGKFFIV 399
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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