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Conserved domains on  [gi|2523362167|gb|WJJ59325|]
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MAG: L1 protein [Leptonychotes weddellii papillomavirus 6]

Protein Classification

major capsid protein L1( domain architecture ID 10010233)

major capsid protein L1 forms an icosahedral capsid with a 50 nm diameter; the capsid is composed of 72 pentamers linked to each other by disulfide bonds and associated with L2 proteins

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PHA02778 PHA02778
major capsid L1 protein; Provisional
 1-506 0e+00

major capsid L1 protein; Provisional


:

Pssm-ID: 222928  Cd Length: 503  Bit Score: 946.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167   1 MPLWLPSNNKVYLPPTSVSRVISTEDYVQRLPLYYCATSSRLLVVGHPYFALEDEEKG-VTVPKVSANQYRVFRIKLPDP 79
Cdd:PHA02778    1 MALWLPSSGKLYLPPTPVAKVLSTDEYVTRTNIFYHASSDRLLTVGHPYFPIKDADKNkVTVPKVSGNQYRVFRVKLPDP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167  80 NRFGLPDTDVYDPDKERLVWGCIGVEVGRGQPLGIGLSGNPLFNRFEDTENPGRYkeIEKRGNDSRQNVSVDNKQTQLLL 159
Cdd:PHA02778   81 NKFALPDKSVYNPEKERLVWALRGLEVGRGQPLGVGVTGHPLFNKLKDTENPNKY--PTAQGTDDRQNVSFDPKQTQLFI 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 160 VGCTPPTGEHWALGRTCDDEPPKPGACPPLVLLNTVIEDGDMFDTGFGAMDFKALQASKSEVPLDISQSACKYPDYLKMN 239
Cdd:PHA02778  159 VGCTPALGEHWDKAKPCADAPPQAGDCPPIELKNSVIEDGDMVDIGFGAMNFKALQANKSDVPLDIVNSICKYPDYLKMA 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 240 ADQYGDPCFFYVRKEQMFARHFFSRQGTLGDAIPEDHILLGVGGQPQAQPSiSVYSSTPSGSLVSSETQIFNRPYWLHKA 319
Cdd:PHA02778  239 NDPYGDSMFFFARREQMYARHFFTRAGTVGEAIPEDLYLKGASGQAQTLGS-SVYFPTPSGSLVSSDAQLFNRPYWLQRA 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 320 QGHNNGICWNNEMFVTLADNTRGTNLSLSVAiNDKPAPTTFTASNFNQYMRHCEEYELQFMFQVCKVVLNPENMAYLHTM 399
Cdd:PHA02778  318 QGHNNGICWNNQLFVTVVDNTRNTNFTISVK-TDETPQTTYKASNFKEYLRHVEEYELSFIFQLCKVPLTPEVLAHLHTM 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 400 NPDILDNWNLGITPPLSNALEDSYRFYKNNATTCPAKQPPKDKVDPYDKWKFWKLDFTEKFSSDLDQYPLGRKFLLQSGV 479
Cdd:PHA02778  397 NPSILEDWNLGFVPPPSSSLEDTYRYIQSLATKCPDNVPPKEKEDPYAKYTFWEVDLTERFSLDLDQFPLGRKFLFQAGL 476

                         490       500
                  ....*....|....*....|....*..
gi 2523362167 480 RAVSRPRpgVKRSSTSSSQARAKRKRR 506
Cdd:PHA02778  477 RRRTRRR--KRKSTSSSSSRSTKRRRR 501
 
Name Accession Description Interval E-value
PHA02778 PHA02778
major capsid L1 protein; Provisional
 1-506 0e+00

major capsid L1 protein; Provisional


Pssm-ID: 222928  Cd Length: 503  Bit Score: 946.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167   1 MPLWLPSNNKVYLPPTSVSRVISTEDYVQRLPLYYCATSSRLLVVGHPYFALEDEEKG-VTVPKVSANQYRVFRIKLPDP 79
Cdd:PHA02778    1 MALWLPSSGKLYLPPTPVAKVLSTDEYVTRTNIFYHASSDRLLTVGHPYFPIKDADKNkVTVPKVSGNQYRVFRVKLPDP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167  80 NRFGLPDTDVYDPDKERLVWGCIGVEVGRGQPLGIGLSGNPLFNRFEDTENPGRYkeIEKRGNDSRQNVSVDNKQTQLLL 159
Cdd:PHA02778   81 NKFALPDKSVYNPEKERLVWALRGLEVGRGQPLGVGVTGHPLFNKLKDTENPNKY--PTAQGTDDRQNVSFDPKQTQLFI 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 160 VGCTPPTGEHWALGRTCDDEPPKPGACPPLVLLNTVIEDGDMFDTGFGAMDFKALQASKSEVPLDISQSACKYPDYLKMN 239
Cdd:PHA02778  159 VGCTPALGEHWDKAKPCADAPPQAGDCPPIELKNSVIEDGDMVDIGFGAMNFKALQANKSDVPLDIVNSICKYPDYLKMA 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 240 ADQYGDPCFFYVRKEQMFARHFFSRQGTLGDAIPEDHILLGVGGQPQAQPSiSVYSSTPSGSLVSSETQIFNRPYWLHKA 319
Cdd:PHA02778  239 NDPYGDSMFFFARREQMYARHFFTRAGTVGEAIPEDLYLKGASGQAQTLGS-SVYFPTPSGSLVSSDAQLFNRPYWLQRA 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 320 QGHNNGICWNNEMFVTLADNTRGTNLSLSVAiNDKPAPTTFTASNFNQYMRHCEEYELQFMFQVCKVVLNPENMAYLHTM 399
Cdd:PHA02778  318 QGHNNGICWNNQLFVTVVDNTRNTNFTISVK-TDETPQTTYKASNFKEYLRHVEEYELSFIFQLCKVPLTPEVLAHLHTM 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 400 NPDILDNWNLGITPPLSNALEDSYRFYKNNATTCPAKQPPKDKVDPYDKWKFWKLDFTEKFSSDLDQYPLGRKFLLQSGV 479
Cdd:PHA02778  397 NPSILEDWNLGFVPPPSSSLEDTYRYIQSLATKCPDNVPPKEKEDPYAKYTFWEVDLTERFSLDLDQFPLGRKFLFQAGL 476

                         490       500
                  ....*....|....*....|....*..
gi 2523362167 480 RAVSRPRpgVKRSSTSSSQARAKRKRR 506
Cdd:PHA02778  477 RRRTRRR--KRKSTSSSSSRSTKRRRR 501
Late_protein_L1 pfam00500
L1 (late) protein;
4-506 0e+00

L1 (late) protein;


Pssm-ID: 459833  Cd Length: 497  Bit Score: 831.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167   4 WLPSNNKVYLPPTSVSRVISTEDYVQRLPLYYCATSSRLLVVGHPYFALEDEEKGVTVPKVSANQYRVFRIKLPDPNRFG 83
Cdd:pfam00500   1 WLPSQQKLYLPPQPVTKVLSTDEYVTRTNIFYHAGTDRLLTVGHPYFEIKGRNDKVLVPKVSGNQYRVFRLKLPDPNRFA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167  84 LPDTDVYDPDKERLVWGCIGVEVGRGQPLGIGLSGNPLFNRFEDTENPGRYkeIEKRGNDSRQNVSVDNKQTQLLLVGCT 163
Cdd:pfam00500  81 LPDKSLYDPDKERLVWALRGLEIGRGQPLGIGVTGHPLFNKFDDAENPNKY--INAQGGDNRQNMAFDPKQTQMFIVGCT 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 164 PPTGEHWALGRTCDDEPPKPGACPPLVLLNTVIEDGDMFDTGFGAMDFKALQASKSEVPLDISQSACKYPDYLKMNADQY 243
Cdd:pfam00500 159 PAIGEHWDKASPCPNQVPKTGDCPPIELKNTVIEDGDMCDIGFGAMDFKALQANKSDVPLDIVNSICKYPDYLKMAEDPY 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 244 GDPCFFYVRKEQMFARHFFSRQGTLGDAIPEDhILLGVGGQPQAQPSISVYSSTPSGSLVSSETQIFNRPYWLHKAQGHN 323
Cdd:pfam00500 239 GDSMFFYARREQMYARHFFSRAGTVGEAVPED-LYIKGAGEEQNTLATSNYFGTPSGSLVSSDGQLFNRPYWLQRAQGHN 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 324 NGICWNNEMFVTLADNTRGTNLSLSVAINDKPApTTFTASNFNQYMRHCEEYELQFMFQVCKVVLNPENMAYLHTMNPDI 403
Cdd:pfam00500 318 NGICWNNQLFVTVVDNTRGTNFTISVKADENDE-TTYDASNFKEYLRHVEEYELSFIFQLCKVKLTPENLAYLHTMNPSI 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 404 LDNWNLGITPPLSNALEDSYRFYKNNATTCPAKQPPKDKVDPYDKWKFWKLDFTEKFSSDLDQYPLGRKFLLQSGVRAVS 483
Cdd:pfam00500 397 LEDWNLGVTPPPSSSLEDTYRYIESLATKCPDNPPPAEKEDPYKGLKFWEVDLSERLSADLDQFPLGRKFLYQSGLTQSS 476

                         490       500
                  ....*....|....*....|...
gi 2523362167 484 RprpGVKRSSTSSSQARAKRKRR 506
Cdd:pfam00500 477 S---STKRKAPASVAVSRSSKRK 496
 
Name Accession Description Interval E-value
PHA02778 PHA02778
major capsid L1 protein; Provisional
 1-506 0e+00

major capsid L1 protein; Provisional


Pssm-ID: 222928  Cd Length: 503  Bit Score: 946.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167   1 MPLWLPSNNKVYLPPTSVSRVISTEDYVQRLPLYYCATSSRLLVVGHPYFALEDEEKG-VTVPKVSANQYRVFRIKLPDP 79
Cdd:PHA02778    1 MALWLPSSGKLYLPPTPVAKVLSTDEYVTRTNIFYHASSDRLLTVGHPYFPIKDADKNkVTVPKVSGNQYRVFRVKLPDP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167  80 NRFGLPDTDVYDPDKERLVWGCIGVEVGRGQPLGIGLSGNPLFNRFEDTENPGRYkeIEKRGNDSRQNVSVDNKQTQLLL 159
Cdd:PHA02778   81 NKFALPDKSVYNPEKERLVWALRGLEVGRGQPLGVGVTGHPLFNKLKDTENPNKY--PTAQGTDDRQNVSFDPKQTQLFI 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 160 VGCTPPTGEHWALGRTCDDEPPKPGACPPLVLLNTVIEDGDMFDTGFGAMDFKALQASKSEVPLDISQSACKYPDYLKMN 239
Cdd:PHA02778  159 VGCTPALGEHWDKAKPCADAPPQAGDCPPIELKNSVIEDGDMVDIGFGAMNFKALQANKSDVPLDIVNSICKYPDYLKMA 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 240 ADQYGDPCFFYVRKEQMFARHFFSRQGTLGDAIPEDHILLGVGGQPQAQPSiSVYSSTPSGSLVSSETQIFNRPYWLHKA 319
Cdd:PHA02778  239 NDPYGDSMFFFARREQMYARHFFTRAGTVGEAIPEDLYLKGASGQAQTLGS-SVYFPTPSGSLVSSDAQLFNRPYWLQRA 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 320 QGHNNGICWNNEMFVTLADNTRGTNLSLSVAiNDKPAPTTFTASNFNQYMRHCEEYELQFMFQVCKVVLNPENMAYLHTM 399
Cdd:PHA02778  318 QGHNNGICWNNQLFVTVVDNTRNTNFTISVK-TDETPQTTYKASNFKEYLRHVEEYELSFIFQLCKVPLTPEVLAHLHTM 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 400 NPDILDNWNLGITPPLSNALEDSYRFYKNNATTCPAKQPPKDKVDPYDKWKFWKLDFTEKFSSDLDQYPLGRKFLLQSGV 479
Cdd:PHA02778  397 NPSILEDWNLGFVPPPSSSLEDTYRYIQSLATKCPDNVPPKEKEDPYAKYTFWEVDLTERFSLDLDQFPLGRKFLFQAGL 476

                         490       500
                  ....*....|....*....|....*..
gi 2523362167 480 RAVSRPRpgVKRSSTSSSQARAKRKRR 506
Cdd:PHA02778  477 RRRTRRR--KRKSTSSSSSRSTKRRRR 501
Late_protein_L1 pfam00500
L1 (late) protein;
4-506 0e+00

L1 (late) protein;


Pssm-ID: 459833  Cd Length: 497  Bit Score: 831.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167   4 WLPSNNKVYLPPTSVSRVISTEDYVQRLPLYYCATSSRLLVVGHPYFALEDEEKGVTVPKVSANQYRVFRIKLPDPNRFG 83
Cdd:pfam00500   1 WLPSQQKLYLPPQPVTKVLSTDEYVTRTNIFYHAGTDRLLTVGHPYFEIKGRNDKVLVPKVSGNQYRVFRLKLPDPNRFA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167  84 LPDTDVYDPDKERLVWGCIGVEVGRGQPLGIGLSGNPLFNRFEDTENPGRYkeIEKRGNDSRQNVSVDNKQTQLLLVGCT 163
Cdd:pfam00500  81 LPDKSLYDPDKERLVWALRGLEIGRGQPLGIGVTGHPLFNKFDDAENPNKY--INAQGGDNRQNMAFDPKQTQMFIVGCT 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 164 PPTGEHWALGRTCDDEPPKPGACPPLVLLNTVIEDGDMFDTGFGAMDFKALQASKSEVPLDISQSACKYPDYLKMNADQY 243
Cdd:pfam00500 159 PAIGEHWDKASPCPNQVPKTGDCPPIELKNTVIEDGDMCDIGFGAMDFKALQANKSDVPLDIVNSICKYPDYLKMAEDPY 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 244 GDPCFFYVRKEQMFARHFFSRQGTLGDAIPEDhILLGVGGQPQAQPSISVYSSTPSGSLVSSETQIFNRPYWLHKAQGHN 323
Cdd:pfam00500 239 GDSMFFYARREQMYARHFFSRAGTVGEAVPED-LYIKGAGEEQNTLATSNYFGTPSGSLVSSDGQLFNRPYWLQRAQGHN 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 324 NGICWNNEMFVTLADNTRGTNLSLSVAINDKPApTTFTASNFNQYMRHCEEYELQFMFQVCKVVLNPENMAYLHTMNPDI 403
Cdd:pfam00500 318 NGICWNNQLFVTVVDNTRGTNFTISVKADENDE-TTYDASNFKEYLRHVEEYELSFIFQLCKVKLTPENLAYLHTMNPSI 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2523362167 404 LDNWNLGITPPLSNALEDSYRFYKNNATTCPAKQPPKDKVDPYDKWKFWKLDFTEKFSSDLDQYPLGRKFLLQSGVRAVS 483
Cdd:pfam00500 397 LEDWNLGVTPPPSSSLEDTYRYIESLATKCPDNPPPAEKEDPYKGLKFWEVDLSERLSADLDQFPLGRKFLYQSGLTQSS 476

                         490       500
                  ....*....|....*....|...
gi 2523362167 484 RprpGVKRSSTSSSQARAKRKRR 506
Cdd:pfam00500 477 S---STKRKAPASVAVSRSSKRK 496
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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