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Conserved domains on  [gi|2524641826|gb|WJK71621|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Amazona vinacea]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 7-326 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 583.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826   7 PLSYPITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLA 86
Cdd:MTH00111    4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  87 FLLALTIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAG 166
Cdd:MTH00111   84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 167 NYTMTTLTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLT 246
Cdd:MTH00111  164 GYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 247 ALLFLNPSTLNPPPELFPLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPYL 326
Cdd:MTH00111  244 TILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 7-326 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 583.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826   7 PLSYPITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLA 86
Cdd:MTH00111    4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  87 FLLALTIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAG 166
Cdd:MTH00111   84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 167 NYTMTTLTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLT 246
Cdd:MTH00111  164 GYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 247 ALLFLNPSTLNPPPELFPLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPYL 326
Cdd:MTH00111  244 TILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
NADHdh pfam00146
NADH dehydrogenase;
13-306 2.31e-112

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 327.89  E-value: 2.31e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  13 TVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLAFLLALT 92
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  93 IWTPLPL--PFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAGNYTM 170
Cdd:pfam00146  81 AFAVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 171 TTLTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLTALLF 250
Cdd:pfam00146 161 SEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2524641826 251 LNpSTLNPPPELFPLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:pfam00146 241 LG-GWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSL 295
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-306 1.78e-102

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 303.59  E-value: 1.78e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826   1 MVWPNIP-LSYPITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLF 79
Cdd:COG1005     1 MSLLLAPlLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  80 ITTPMLAFLLALTIWTPLPL--PFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAII 157
Cdd:COG1005    81 LLAPILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 158 LLSMVMLAGNYTMTTLTVSQE-PLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEY 236
Cdd:COG1005   161 LLGVVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEY 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2524641826 237 ANIMLMNTLTALLFL----NPSTLNPPPELFPLI-LATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:COG1005   241 ANMFLVSALATTLFLggwlGPFPILPLGGLPGILwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 7-326 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 583.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826   7 PLSYPITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLA 86
Cdd:MTH00111    4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  87 FLLALTIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAG 166
Cdd:MTH00111   84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 167 NYTMTTLTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLT 246
Cdd:MTH00111  164 GYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 247 ALLFLNPSTLNPPPELFPLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPYL 326
Cdd:MTH00111  244 TILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 8-326 3.63e-178

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 495.67  E-value: 3.63e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826   8 LSYPITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLAF 87
Cdd:MTH00134    6 ITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  88 LLALTIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAGN 167
Cdd:MTH00134   86 TLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 168 YTMTTLTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLTA 247
Cdd:MTH00134  166 FTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSA 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2524641826 248 LLFLNPSTLNPPPELFPLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPYL 326
Cdd:MTH00134  246 ILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQL 324
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 5-324 1.17e-174

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 486.44  E-value: 1.17e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826   5 NIPLSYPITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPM 84
Cdd:MTH00071    2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  85 LAFLLALTIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVML 164
Cdd:MTH00071   82 MALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 165 AGNYTMTTLTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNT 244
Cdd:MTH00071  162 TGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 245 LTALLFLNPSTLNPPPELFPLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPP 324
Cdd:MTH00071  242 LSTILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 12-326 5.76e-174

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 484.51  E-value: 5.76e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  12 ITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLAFLLAL 91
Cdd:MTH00104    4 INILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLAL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  92 TIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAGNYTMT 171
Cdd:MTH00104   84 TMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLS 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 172 TLTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLTALLFL 251
Cdd:MTH00104  164 TLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFL 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2524641826 252 NPSTLNPPPELFPLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPYL 326
Cdd:MTH00104  244 GAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 8-324 3.83e-144

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 408.91  E-value: 3.83e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826   8 LSYPITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLAF 87
Cdd:MTH00218    2 LLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  88 LLALTIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAGN 167
Cdd:MTH00218   82 TLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 168 YTMTTLTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLTA 247
Cdd:MTH00218  162 FSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSV 241

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2524641826 248 LLFLNPSTLnpppelfPLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPP 324
Cdd:MTH00218  242 ILFLGTSLT-------TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 5-326 7.66e-139

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 395.88  E-value: 7.66e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826   5 NIPLSYPITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPM 84
Cdd:MTH00040    1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  85 LAFLLALTIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVML 164
Cdd:MTH00040   81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 165 AGNYTMTTLTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNT 244
Cdd:MTH00040  161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 245 LTALLFLNPStlNPPPELFPL---ILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAG 321
Cdd:MTH00040  241 LSVILFLGGG--SPFNEIFPIniiIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNI 318


                  ....*
gi 2524641826 322 LPPYL 326
Cdd:MTH00040  319 LPPNY 323
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 12-321 5.63e-114

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 332.09  E-value: 5.63e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  12 ITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLAFLLAL 91
Cdd:MTH00195    6 IHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  92 TIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAGNYTMT 171
Cdd:MTH00195   86 ILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFT 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 172 TLTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLTALLFL 251
Cdd:MTH00195  166 IMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFL 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 252 NPSTLnpppelfpLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAG 321
Cdd:MTH00195  246 GGGGT--------IIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
13-306 2.31e-112

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 327.89  E-value: 2.31e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  13 TVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLAFLLALT 92
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  93 IWTPLPL--PFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAGNYTM 170
Cdd:pfam00146  81 AFAVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 171 TTLTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLTALLF 250
Cdd:pfam00146 161 SEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2524641826 251 LNpSTLNPPPELFPLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:pfam00146 241 LG-GWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSL 295
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 13-308 3.09e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 322.59  E-value: 3.09e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  13 TVLTYmIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLAFLLALT 92
Cdd:MTH00143    7 SVFTY-LCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  93 IWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAGNYTMTT 172
Cdd:MTH00143   86 LWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIE 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 173 LTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLTALLFLn 252
Cdd:MTH00143  166 ISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFF- 244

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2524641826 253 pSTLNPPPELFPLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSL 308
Cdd:MTH00143  245 -GGSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 18-317 5.12e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 322.10  E-value: 5.12e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  18 MIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLAFLLALTIWTPL 97
Cdd:MTH00193   12 IICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIY 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  98 PLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAGNYTMTTLTVSQ 177
Cdd:MTH00193   92 PYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQ 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 178 EPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLTALLFLNPSTLN 257
Cdd:MTH00193  172 KYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGDLLS 251

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 258 pppelfpLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPI 317
Cdd:MTH00193  252 -------LLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 12-314 7.24e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 306.58  E-value: 7.24e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  12 ITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLAFLLAL 91
Cdd:MTH00225    5 LKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  92 TIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAGNYTMT 171
Cdd:MTH00225   85 ILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLF 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 172 TLTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLTALLFL 251
Cdd:MTH00225  165 DFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFF 244

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2524641826 252 NPSTLnpppeLFPLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTS 314
Cdd:MTH00225  245 GGFFV-----TIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-306 1.78e-102

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 303.59  E-value: 1.78e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826   1 MVWPNIP-LSYPITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLF 79
Cdd:COG1005     1 MSLLLAPlLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  80 ITTPMLAFLLALTIWTPLPL--PFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAII 157
Cdd:COG1005    81 LLAPILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 158 LLSMVMLAGNYTMTTLTVSQE-PLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEY 236
Cdd:COG1005   161 LLGVVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEY 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2524641826 237 ANIMLMNTLTALLFL----NPSTLNPPPELFPLI-LATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:COG1005   241 ANMFLVSALATTLFLggwlGPFPILPLGGLPGILwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 8-324 3.99e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 302.81  E-value: 3.99e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826   8 LSYPITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLAF 87
Cdd:MTH00216    6 IFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  88 LLALTIWTPLPLPFPLV--DLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLA 165
Cdd:MTH00216   86 TLALIVWGVIPYERGVLisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCV 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 166 GNYTMTTLTVSQ-EPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNT 244
Cdd:MTH00216  166 GSLSITEIVLAQnNGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSC 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 245 LTALLFLNpSTLNPPPELF--PLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGL 322
Cdd:MTH00216  246 LTTILFLG-GWLSPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGP 324


                  ..
gi 2524641826 323 PP 324
Cdd:MTH00216  325 PP 326
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 12-325 9.69e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 301.65  E-value: 9.69e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  12 ITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLAFLLAL 91
Cdd:MTH00054    6 IKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  92 TIWTPLPL--PFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAGNYT 169
Cdd:MTH00054   86 IAWGVIPYgeGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLN 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 170 MTTLTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLTALL 249
Cdd:MTH00054  166 LTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVIL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 250 FL----NPSTLNPPPELFpLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLHLWHTSMPISYAGLPPY 325
Cdd:MTH00054  246 FLggwlVISGPTSYFSNF-VWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPPF 324
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-306 1.54e-96

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 288.24  E-value: 1.54e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826   1 MVWPNIPLSYPITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFI 80
Cdd:PRK06076    3 LFGPDLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  81 TTPMLAFLLALTIWTPLPL--PFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIIL 158
Cdd:PRK06076   83 LAPVIAFIPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 159 LSMVMLAGNYTMTTLTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYAN 238
Cdd:PRK06076  163 LAVVLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYIN 242

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2524641826 239 IMLMNTLTALLFLN------PSTLNPPPelfPLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:PRK06076  243 MILVSALITTLFLGgwlppfPLGGGIPG---AIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSL 313
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 6-308 1.14e-84

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 257.79  E-value: 1.14e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826   6 IPLSYPITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPML 85
Cdd:MTH00010    1 MNISFFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  86 AFLLALTIWTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLA 165
Cdd:MTH00010   81 SLILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 166 GNYTMTTLTVSQ-EPLYLMFSswPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNT 244
Cdd:MTH00010  161 QTFSFSKIIMSQySWILLMII--PLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSL 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2524641826 245 LTALLFLNPStlnPPPELFPLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSL 308
Cdd:MTH00010  239 FTSVFFTSFI---PSIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTS 299
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 8-324 1.22e-84

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 258.79  E-value: 1.22e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826   8 LSYPITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLAF 87
Cdd:MTH00029    7 ITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISF 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  88 LLALTIWTPLPLP--FPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLA 165
Cdd:MTH00029   87 TLAILAWAIVTMDqgVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCV 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 166 GNYTMTTLTVSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTL 245
Cdd:MTH00029  167 GSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCM 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 246 TALLFLNP--STLNPPPELFPLILA--------------TKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSLH 309
Cdd:MTH00029  247 MTIFFLGGwlSPLDGIPTPPEAFSIfeqiasskssfwffTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLV 326

                         330
                  ....*....|....*
gi 2524641826 310 LWHTSMPISYAGLPP 324
Cdd:MTH00029  327 ILTAGILIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 14-306 3.08e-64

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 204.36  E-value: 3.08e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  14 VLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLAFLLALTI 93
Cdd:MTH00090    2 LLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  94 WTPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMlagNYTMTTL 173
Cdd:MTH00090   82 WFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIML---HNNSFSF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 174 TVSqeplyLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLTALLFLNP 253
Cdd:MTH00090  159 VSS-----FSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKF 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2524641826 254 STLNpppelfplilatkTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:MTH00090  234 SFLM-------------LFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 21-306 5.39e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 162.79  E-value: 5.39e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  21 ILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLAFLLALTIWTPLPLP 100
Cdd:MTH00058   14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 101 FPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAGNYTMTTLTVSQEPL 180
Cdd:MTH00058   94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLS 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 181 YLMFssWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLTALLFLNPStlnppp 260
Cdd:MTH00058  174 VLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGG------ 245

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 2524641826 261 elFPLILATKTLLLsssFLWIRASYPRFRYDQLMHLLWKNFLPLTL 306
Cdd:MTH00058  246 --FVSIMLLFHLLF---FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
 11-306 7.02e-47

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 162.04  E-value: 7.02e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  11 PITVLTYMIPILIAVAFLTLTERKILSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFITTPMLA---- 86
Cdd:CHL00032   30 LVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAvisi 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  87 FLLALTIwtPLPLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAg 166
Cdd:CHL00032  110 LLSYLVI--PFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLS- 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 167 NYTMTTLTVSQEPLYlMFSSWPL------AMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIM 240
Cdd:CHL00032  187 NSLSTVDIVEAQSKY-GFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL 265

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 241 LMNTLTALLFLNPSTLNPP----PELF----------PLILATKTLLLSSSFLWI----RASYPRFRYDQLMHLLWKNFL 302
Cdd:CHL00032  266 VSSLFVTVLYLGGWNLSIPyifiPELFeinktggvfgTTIGIFITLAKTYLFLFIsittRWTLPRLRMDQLLNLGWKFLL 345


                  ....
gi 2524641826 303 PLTL 306
Cdd:CHL00032  346 PISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
21-308 1.87e-31

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 119.52  E-value: 1.87e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  21 ILIAVA-FLTLTERKILSYMQSRKGPnivgpfGLLQPVADGVKLFIKEPIRPSTSSPLlFITTPMLAF--LLALTIWTPL 97
Cdd:COG0650    13 LALLLApLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVALaaMLLAALLVPV 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826  98 PLPFPLVDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVSQTISYEVTLAIILLSMVMLAGN---YTMTTLT 174
Cdd:COG0650    86 LTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGStslSDIVAYQ 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524641826 175 VSQEPLYLMFSSWPLAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFTLFFLAEYANIMLMNTLTALLFLnPS 254
Cdd:COG0650   166 AAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLFL-PW 244

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2524641826 255 TLNPPPELFPLILATKTLLLSSSFLWIRASYPRFRYDQLMHLLWKNFLPLTLSL 308
Cdd:COG0650   245 GIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLAL 298
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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