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Conserved domains on  [gi|2554176897|gb|WKW95541|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Rhynchopsitta pachyrhyncha]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009582)

NADH dehydrogenase subunit 6 (mitochondrion) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-170 9.90e-51

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 177196  Cd Length: 173  Bit Score: 160.31  E-value: 9.90e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897   1 MMYFLAFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00138    1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897  81 AWGGRYVVGYALGLVPIGVGLAVWGWGGGFKMD--TVDSVGGVFV-RLDFSGVALFYSCGGGMFLVGGWGLLLTLFVVLE 157
Cdd:MTH00138   81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSwvVVDELKEFSVlRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                         170
                  ....*....|...
gi 2554176897 158 VVRGLSRGVIRAV 170
Cdd:MTH00138  161 LTRGLSRGALRAV 173
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-170 9.90e-51

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 160.31  E-value: 9.90e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897   1 MMYFLAFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00138    1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897  81 AWGGRYVVGYALGLVPIGVGLAVWGWGGGFKMD--TVDSVGGVFV-RLDFSGVALFYSCGGGMFLVGGWGLLLTLFVVLE 157
Cdd:MTH00138   81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSwvVVDELKEFSVlRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                         170
                  ....*....|...
gi 2554176897 158 VVRGLSRGVIRAV 170
Cdd:MTH00138  161 LTRGLSRGALRAV 173
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-157 1.42e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 55.97  E-value: 1.42e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897  17 LLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQAWGGRYVVGYALGLVP 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2554176897  97 IGVGLAVWGWGGGFKMDTVDSVGGVFVRLDFSGVALFYScGGGMFLVGGWGLLLTLFVVLE 157
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEAIGELLFTD-YLLPFELASVLLLVALVGAIV 140
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-170 9.90e-51

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 160.31  E-value: 9.90e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897   1 MMYFLAFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00138    1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897  81 AWGGRYVVGYALGLVPIGVGLAVWGWGGGFKMD--TVDSVGGVFV-RLDFSGVALFYSCGGGMFLVGGWGLLLTLFVVLE 157
Cdd:MTH00138   81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSwvVVDELKEFSVlRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                         170
                  ....*....|...
gi 2554176897 158 VVRGLSRGVIRAV 170
Cdd:MTH00138  161 LTRGLSRGALRAV 173
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-170 2.59e-49

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 156.83  E-value: 2.59e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897   1 MMYFLAFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115    1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897  81 AWGGR----YVVGYALGLVPIGVGLAVWGWGGGFKMDTVDSVGGVFVRLDFSGVALFYSCGGGMFLVGGWGLLLTLFVVL 156
Cdd:MTH00115   81 AWGDWgvvgYVVGFVLVVVVVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                         170
                  ....*....|....
gi 2554176897 157 EVVRGLSRGVIRAV 170
Cdd:MTH00115  161 ELVRGLSRGALRAF 174
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-170 1.16e-44

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 144.99  E-value: 1.16e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897   1 MMYFLAFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00065    1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897  81 AWGGRYVVGYALG--LVPIGVGLAVWGWGGGFKMDTVDSVGGVFVRLDFSGVALFYSCGGGMFLVGGWGLLLTLFVVLEV 158
Cdd:MTH00065   81 AWGSWSVLVYVLFylLLLIVGYILFGCNFSLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLEV 160

                         170
                  ....*....|..
gi 2554176897 159 VRGLSRGVIRAV 170
Cdd:MTH00065  161 TRGLSRGSLRAV 172
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-161 6.36e-27

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 99.49  E-value: 6.36e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897   1 MMYFLAFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00109    2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897  81 AWGGRYVV---------------GYALGLVPIGVGLAVWGWGGgfkMDTVDSVGGVFVRLDFSGVALFYSCGGGMFLVGG 145
Cdd:MTH00109   82 TWVSNKVVlgalllgllmelllvLYVLKDDEVEVVFNFNGLGD---WVIYDTGGSGFFSEDAMGVAALYSYGTWLVVVTG 158

                         170
                  ....*....|....*.
gi 2554176897 146 WGLLLTLFVVLEVVRG 161
Cdd:MTH00109  159 WSLFIGVFVIIEITRG 174
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-170 4.37e-23

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 89.66  E-value: 4.37e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897   1 MMYFLAFLGVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00214    1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897  81 AWGGRYVVGYALGLVpIGVGLAVWGWGGGFKMDTVDSVGGvFVRLDFSGVALFYSCGGGMFLVGGWGLLLTLFVVLEVVR 160
Cdd:MTH00214   81 SWGGWSVLLFFLFYL-LGLGFVGFYFYGGWEMLSWMGVDE-ANNLDLSGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVR 158

                         170
                  ....*....|
gi 2554176897 161 GLSRGVIRAV 170
Cdd:MTH00214  159 GLSRGALRVV 168
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 1-169 8.91e-14

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 64.93  E-value: 8.91e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897   1 MMYFLAFlgVSFVLASLLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00045    1 MVFYLFL--ILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897  81 AWGgryvVGYALGLVPIGVglaVWGWGGGFKMDTVDSVGGVFVRL-DFSGVALFYSCGGGMFLVGGWGLLLTLFVVLEVV 159
Cdd:MTH00045   79 VSN----LGEVLVLSLLLS---LWVFISFDNFLELSNNNWSLVSLsDLVGSSELYNSGGLYLLLGGFILLVALVVALVIS 151

                         170
                  ....*....|
gi 2554176897 160 RGLSRGVIRA 169
Cdd:MTH00045  152 FGHEYSSLRA 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-157 1.42e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 55.97  E-value: 1.42e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2554176897  17 LLVASNPSPHYGVVGLVFGSVVGCGWLVSLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQAWGGRYVVGYALGLVP 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2554176897  97 IGVGLAVWGWGGGFKMDTVDSVGGVFVRLDFSGVALFYScGGGMFLVGGWGLLLTLFVVLE 157
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEAIGELLFTD-YLLPFELASVLLLVALVGAIV 140
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 49-74 3.48e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 36.32  E-value: 3.48e-03
                          10        20
                  ....*....|....*....|....*.
gi 2554176897  49 SFVSLVLFMVYLGGMLVVFVYSVSLA 74
Cdd:MTH00166   46 FWFSYILFLIFLGGMLVLFIYITSLA 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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