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Conserved domains on  [gi|2559802772|gb|WLI71532|]
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superinfection exclusion protein [Salmonella phage vB_SenM-AKM_ssTn]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GP17 pfam17420
Superinfection exclusion gene product 17; Bacteriophages infect host cells by injecting their ...
8-101 4.05e-55

Superinfection exclusion gene product 17; Bacteriophages infect host cells by injecting their genome through the cell wall. To this end, tailed bacteriophages have evolved complex tail machines that extend from a unique capsid vertex, providing both an attachment point to the host surface, and a channel for genome-ejection through the cell envelope. Family members of this domain are putative gp17 proteins involved in genome delivery tail machine in Entereobacteria phage p22 and Salmonella phage ViI. Gp17 found in other bacteriophages such as SPP1 (siphophage SPP1, a lytic Bacillus subtilis phage) has been identified as a tail completion protein adopting an alpha/beta fold, and found to be located at the interface between the head-to-tail connector and the tail of bacteriophage SPP1.


:

Pssm-ID: 340135  Cd Length: 98  Bit Score: 166.23  E-value: 4.05e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559802772   8 LKFRVWHIPQVPGIAFHVEVPTFEEAQRLKNALGDYDLFQFNNNIKPDYCNASGIQIYQHDLTDDDLNDMGLDDRWVDME 87
Cdd:pfam17420   1 LKLRVWHIPQVPGKAFHVEVPSVEEGVRLKDALADYDLFQYNNNIKPDYCNASGLQMYDEDLTDDDLEDMGLDDRWVDWY 80
                          90
                  ....*....|....*...
gi 2559802772  88 DV----DELNDYFEHLRS 101
Cdd:pfam17420  81 DEdnffDEPNEYLEHLKS 98
 
Name Accession Description Interval E-value
GP17 pfam17420
Superinfection exclusion gene product 17; Bacteriophages infect host cells by injecting their ...
8-101 4.05e-55

Superinfection exclusion gene product 17; Bacteriophages infect host cells by injecting their genome through the cell wall. To this end, tailed bacteriophages have evolved complex tail machines that extend from a unique capsid vertex, providing both an attachment point to the host surface, and a channel for genome-ejection through the cell envelope. Family members of this domain are putative gp17 proteins involved in genome delivery tail machine in Entereobacteria phage p22 and Salmonella phage ViI. Gp17 found in other bacteriophages such as SPP1 (siphophage SPP1, a lytic Bacillus subtilis phage) has been identified as a tail completion protein adopting an alpha/beta fold, and found to be located at the interface between the head-to-tail connector and the tail of bacteriophage SPP1.


Pssm-ID: 340135  Cd Length: 98  Bit Score: 166.23  E-value: 4.05e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559802772   8 LKFRVWHIPQVPGIAFHVEVPTFEEAQRLKNALGDYDLFQFNNNIKPDYCNASGIQIYQHDLTDDDLNDMGLDDRWVDME 87
Cdd:pfam17420   1 LKLRVWHIPQVPGKAFHVEVPSVEEGVRLKDALADYDLFQYNNNIKPDYCNASGLQMYDEDLTDDDLEDMGLDDRWVDWY 80
                          90
                  ....*....|....*...
gi 2559802772  88 DV----DELNDYFEHLRS 101
Cdd:pfam17420  81 DEdnffDEPNEYLEHLKS 98
PHA01516 PHA01516
hypothetical protein
8-100 5.24e-38

hypothetical protein


Pssm-ID: 107038  Cd Length: 98  Bit Score: 123.15  E-value: 5.24e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559802772   8 LKFRVWHIPQVPGIAFHVEVPTFEEAQRLKNALGDYDLFQFNNNIKPDYCNASGIQIYQHDLTDDDLNDMGLDDRWVDME 87
Cdd:PHA01516    1 MKLRVWHIPQVPMKPFIVEVASVEEGVRVMDALADYDAFQYDNNIKPDYCNANGLQMWDESLTDQDLEEMELTDRWVDWY 80
                          90
                  ....*....|....*..
gi 2559802772  88 D----VDELNDYFEHLR 100
Cdd:PHA01516   81 SecqcYDDPREYLESLK 97
 
Name Accession Description Interval E-value
GP17 pfam17420
Superinfection exclusion gene product 17; Bacteriophages infect host cells by injecting their ...
8-101 4.05e-55

Superinfection exclusion gene product 17; Bacteriophages infect host cells by injecting their genome through the cell wall. To this end, tailed bacteriophages have evolved complex tail machines that extend from a unique capsid vertex, providing both an attachment point to the host surface, and a channel for genome-ejection through the cell envelope. Family members of this domain are putative gp17 proteins involved in genome delivery tail machine in Entereobacteria phage p22 and Salmonella phage ViI. Gp17 found in other bacteriophages such as SPP1 (siphophage SPP1, a lytic Bacillus subtilis phage) has been identified as a tail completion protein adopting an alpha/beta fold, and found to be located at the interface between the head-to-tail connector and the tail of bacteriophage SPP1.


Pssm-ID: 340135  Cd Length: 98  Bit Score: 166.23  E-value: 4.05e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559802772   8 LKFRVWHIPQVPGIAFHVEVPTFEEAQRLKNALGDYDLFQFNNNIKPDYCNASGIQIYQHDLTDDDLNDMGLDDRWVDME 87
Cdd:pfam17420   1 LKLRVWHIPQVPGKAFHVEVPSVEEGVRLKDALADYDLFQYNNNIKPDYCNASGLQMYDEDLTDDDLEDMGLDDRWVDWY 80
                          90
                  ....*....|....*...
gi 2559802772  88 DV----DELNDYFEHLRS 101
Cdd:pfam17420  81 DEdnffDEPNEYLEHLKS 98
PHA01516 PHA01516
hypothetical protein
8-100 5.24e-38

hypothetical protein


Pssm-ID: 107038  Cd Length: 98  Bit Score: 123.15  E-value: 5.24e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559802772   8 LKFRVWHIPQVPGIAFHVEVPTFEEAQRLKNALGDYDLFQFNNNIKPDYCNASGIQIYQHDLTDDDLNDMGLDDRWVDME 87
Cdd:PHA01516    1 MKLRVWHIPQVPMKPFIVEVASVEEGVRVMDALADYDAFQYDNNIKPDYCNANGLQMWDESLTDQDLEEMELTDRWVDWY 80
                          90
                  ....*....|....*..
gi 2559802772  88 D----VDELNDYFEHLR 100
Cdd:PHA01516   81 SecqcYDDPREYLESLK 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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