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MULTISPECIES: RNA chaperone/antiterminator CspA [Bacteria]
similar to cold shock protein CspA( domain architecture ID 10793381)
protein similar to cold shock protein CspA
List of domain hits
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Name | Accession | Description | Interval | E-value | ||
PRK10354 | PRK10354 | RNA chaperone/antiterminator CspA; |
1-70 | 4.54e-43 | ||
RNA chaperone/antiterminator CspA; : Pssm-ID: 182402 Cd Length: 70 Bit Score: 133.18 E-value: 4.54e-43
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Name | Accession | Description | Interval | E-value | ||
PRK10354 | PRK10354 | RNA chaperone/antiterminator CspA; |
1-70 | 4.54e-43 | ||
RNA chaperone/antiterminator CspA; Pssm-ID: 182402 Cd Length: 70 Bit Score: 133.18 E-value: 4.54e-43
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CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
5-70 | 6.70e-36 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 115.03 E-value: 6.70e-36
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CspC | COG1278 | Cold shock protein, CspA family [Transcription]; |
6-70 | 3.49e-35 | ||
Cold shock protein, CspA family [Transcription]; Pssm-ID: 440889 Cd Length: 67 Bit Score: 113.37 E-value: 3.49e-35
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CSP_CDS | cd04458 | Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in ... |
5-68 | 2.72e-32 | ||
Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription. Pssm-ID: 239905 Cd Length: 65 Bit Score: 105.74 E-value: 2.72e-32
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cspD | TIGR02381 | cold shock domain protein CspD; This model represents what appears to be a phylogenetically ... |
6-64 | 5.93e-24 | ||
cold shock domain protein CspD; This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD (SP|P24245) and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication. [DNA metabolism, DNA replication, recombination, and repair, Cellular processes, Adaptations to atypical conditions] Pssm-ID: 131434 Cd Length: 68 Bit Score: 84.90 E-value: 5.93e-24
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CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
6-70 | 9.79e-21 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 76.87 E-value: 9.79e-21
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Name | Accession | Description | Interval | E-value | ||
PRK10354 | PRK10354 | RNA chaperone/antiterminator CspA; |
1-70 | 4.54e-43 | ||
RNA chaperone/antiterminator CspA; Pssm-ID: 182402 Cd Length: 70 Bit Score: 133.18 E-value: 4.54e-43
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PRK09890 | PRK09890 | cold shock protein CspG; Provisional |
1-70 | 5.38e-36 | ||
cold shock protein CspG; Provisional Pssm-ID: 77467 Cd Length: 70 Bit Score: 115.63 E-value: 5.38e-36
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CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
5-70 | 6.70e-36 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 115.03 E-value: 6.70e-36
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CspC | COG1278 | Cold shock protein, CspA family [Transcription]; |
6-70 | 3.49e-35 | ||
Cold shock protein, CspA family [Transcription]; Pssm-ID: 440889 Cd Length: 67 Bit Score: 113.37 E-value: 3.49e-35
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CSP_CDS | cd04458 | Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in ... |
5-68 | 2.72e-32 | ||
Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription. Pssm-ID: 239905 Cd Length: 65 Bit Score: 105.74 E-value: 2.72e-32
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cspE | PRK09507 | cold shock-like protein CspE; |
4-70 | 1.67e-30 | ||
cold shock-like protein CspE; Pssm-ID: 169931 Cd Length: 69 Bit Score: 101.65 E-value: 1.67e-30
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PRK10943 | PRK10943 | cold shock-like protein CspC; Provisional |
3-70 | 8.73e-26 | ||
cold shock-like protein CspC; Provisional Pssm-ID: 170841 Cd Length: 69 Bit Score: 89.74 E-value: 8.73e-26
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cspD | TIGR02381 | cold shock domain protein CspD; This model represents what appears to be a phylogenetically ... |
6-64 | 5.93e-24 | ||
cold shock domain protein CspD; This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD (SP|P24245) and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication. [DNA metabolism, DNA replication, recombination, and repair, Cellular processes, Adaptations to atypical conditions] Pssm-ID: 131434 Cd Length: 68 Bit Score: 84.90 E-value: 5.93e-24
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CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
6-70 | 9.79e-21 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 76.87 E-value: 9.79e-21
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PRK09937 | PRK09937 | cold shock-like protein CspD; |
7-64 | 1.27e-19 | ||
cold shock-like protein CspD; Pssm-ID: 77494 Cd Length: 74 Bit Score: 74.38 E-value: 1.27e-19
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PRK14998 | PRK14998 | cold shock-like protein CspD; Provisional |
6-70 | 4.01e-19 | ||
cold shock-like protein CspD; Provisional Pssm-ID: 184960 Cd Length: 73 Bit Score: 73.16 E-value: 4.01e-19
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PRK15463 | PRK15463 | cold shock-like protein CspF; Provisional |
1-67 | 2.40e-17 | ||
cold shock-like protein CspF; Provisional Pssm-ID: 185360 Cd Length: 70 Bit Score: 68.39 E-value: 2.40e-17
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PRK15464 | PRK15464 | cold shock-like protein CspH; Provisional |
1-67 | 1.64e-13 | ||
cold shock-like protein CspH; Provisional Pssm-ID: 185361 Cd Length: 70 Bit Score: 58.57 E-value: 1.64e-13
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VacB | COG0557 | Exoribonuclease R [Transcription]; |
16-33 | 1.81e-04 | ||
Exoribonuclease R [Transcription]; Pssm-ID: 440323 [Multi-domain] Cd Length: 711 Bit Score: 37.39 E-value: 1.81e-04
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OB_RNB | pfam08206 | Ribonuclease B OB domain; This family includes the N-terminal OB domain found in ribonuclease ... |
15-39 | 2.63e-03 | ||
Ribonuclease B OB domain; This family includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies. Pssm-ID: 429863 [Multi-domain] Cd Length: 58 Bit Score: 32.51 E-value: 2.63e-03
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Blast search parameters | ||||
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