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Conserved domains on  [gi|445955616|ref|WP_000033471|]
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MULTISPECIES: phage DNA packaging protein J [Bacteria][Archaea]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Microvir_J pfam04726
Microvirus J protein; This small protein is involved in DNA packaging, interacting with DNA ...
 2-38 2.34e-09

Microvirus J protein; This small protein is involved in DNA packaging, interacting with DNA via its hydrophobic carboxyl terminus. In bacteriophage phi-X174, J is present in 60 copies, and forms an S-shaped polypeptide chain without any secondary structure. It is thought to interact with DNA through simple charge interactions.


:

Pssm-ID: 282569  Cd Length: 37  Bit Score: 45.91  E-value: 2.34e-09
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 445955616   2 SKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 38
Cdd:pfam04726  1 SKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 37
 
Name Accession Description Interval E-value
Microvir_J pfam04726
Microvirus J protein; This small protein is involved in DNA packaging, interacting with DNA ...
 2-38 2.34e-09

Microvirus J protein; This small protein is involved in DNA packaging, interacting with DNA via its hydrophobic carboxyl terminus. In bacteriophage phi-X174, J is present in 60 copies, and forms an S-shaped polypeptide chain without any secondary structure. It is thought to interact with DNA through simple charge interactions.


Pssm-ID: 282569  Cd Length: 37  Bit Score: 45.91  E-value: 2.34e-09
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 445955616   2 SKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 38
Cdd:pfam04726  1 SKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 37
J PHA00008
DNA packaging protein
 14-38 1.80e-03

DNA packaging protein


Pssm-ID: 222770  Cd Length: 25  Bit Score: 31.06  E-value: 1.80e-03
                        10        20
                ....*....|....*....|....*
gi 445955616 14 RPQPLRGTKGKRKGARLWYVGGQQF 38
Cdd:PHA00008  1 RKKSARRSPSRRKGARLWYVGGTQF 25
 
Name Accession Description Interval E-value
Microvir_J pfam04726
Microvirus J protein; This small protein is involved in DNA packaging, interacting with DNA ...
 2-38 2.34e-09

Microvirus J protein; This small protein is involved in DNA packaging, interacting with DNA via its hydrophobic carboxyl terminus. In bacteriophage phi-X174, J is present in 60 copies, and forms an S-shaped polypeptide chain without any secondary structure. It is thought to interact with DNA through simple charge interactions.


Pssm-ID: 282569  Cd Length: 37  Bit Score: 45.91  E-value: 2.34e-09
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 445955616   2 SKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 38
Cdd:pfam04726  1 SKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF 37
J PHA00008
DNA packaging protein
 14-38 1.80e-03

DNA packaging protein


Pssm-ID: 222770  Cd Length: 25  Bit Score: 31.06  E-value: 1.80e-03
                        10        20
                ....*....|....*....|....*
gi 445955616 14 RPQPLRGTKGKRKGARLWYVGGQQF 38
Cdd:PHA00008  1 RKKSARRSPSRRKGARLWYVGGTQF 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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