NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446517898|ref|WP_000595244|]
View 

MULTISPECIES: transcriptional activator RinB [Bacteria]

Protein Classification

transcriptional activator RinB( domain architecture ID 10532927)

phage transcriptional activator RinB activates int gene expression, probably by providing stability to rinA

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RinB pfam06116
Transcriptional activator RinB; This family consists of several Staphylococcus aureus ...
 3-53 2.23e-19

Transcriptional activator RinB; This family consists of several Staphylococcus aureus bacteriophage RinB proteins and related sequences from their host. The int gene of staphylococcal bacteriophage phi 11 is the only viral gene responsible for the integrative recombination of phi 11. rinA and rinB, are both required to activate expression of the int gene.


:

Pssm-ID: 283718  Cd Length: 51  Bit Score: 72.32  E-value: 2.23e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 446517898   3 KQILRLLFLLAMYELGKYVTEKVYIMTTANDDVEAPSDFAKLSDQSDLMRA 53
Cdd:pfam06116  1 KEIIKLIFFLAALALGKKATEQLLIMLEANDDVEAPSDFAKLSDHLDLMKA 51
 
Name Accession Description Interval E-value
RinB pfam06116
Transcriptional activator RinB; This family consists of several Staphylococcus aureus ...
 3-53 2.23e-19

Transcriptional activator RinB; This family consists of several Staphylococcus aureus bacteriophage RinB proteins and related sequences from their host. The int gene of staphylococcal bacteriophage phi 11 is the only viral gene responsible for the integrative recombination of phi 11. rinA and rinB, are both required to activate expression of the int gene.


Pssm-ID: 283718  Cd Length: 51  Bit Score: 72.32  E-value: 2.23e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 446517898   3 KQILRLLFLLAMYELGKYVTEKVYIMTTANDDVEAPSDFAKLSDQSDLMRA 53
Cdd:pfam06116  1 KEIIKLIFFLAALALGKKATEQLLIMLEANDDVEAPSDFAKLSDHLDLMKA 51
 
Name Accession Description Interval E-value
RinB pfam06116
Transcriptional activator RinB; This family consists of several Staphylococcus aureus ...
 3-53 2.23e-19

Transcriptional activator RinB; This family consists of several Staphylococcus aureus bacteriophage RinB proteins and related sequences from their host. The int gene of staphylococcal bacteriophage phi 11 is the only viral gene responsible for the integrative recombination of phi 11. rinA and rinB, are both required to activate expression of the int gene.


Pssm-ID: 283718  Cd Length: 51  Bit Score: 72.32  E-value: 2.23e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 446517898   3 KQILRLLFLLAMYELGKYVTEKVYIMTTANDDVEAPSDFAKLSDQSDLMRA 53
Cdd:pfam06116  1 KEIIKLIFFLAALALGKKATEQLLIMLEANDDVEAPSDFAKLSDHLDLMKA 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH