|
Name |
Accession |
Description |
Interval |
E-value |
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
11-242 |
3.73e-115 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 329.82 E-value: 3.73e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 11 LKSLKLFGMAHAIEELGNQNSPAFNQALPMLDSLIKAEVAEREVRSVNYQLRVAKFPVYRDLVGFDFS-QSLVNEATVKQ 89
Cdd:NF038214 1 LRQLKLPGMARALEELAEQAAREELSFEEFLALLLEAELAERENRRIERRLKRARFPAAKTLEDFDFTaAPGLDKAQIRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 90 LHRCDFMEQAQNVVLIGGPGTGKTHLATAIGTQAVMHlNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLYADLVILDE 169
Cdd:NF038214 81 LATLDFIERAENVLLLGPPGTGKTHLAIALGYAACRQ-GYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDE 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446905993 170 LGYLPFSQTGGALLFHLLSKLYEKTSVILTTNLSFSEWSRVFGDEKMTTALLDRLTHHCHILETGNESYRFKH 242
Cdd:NF038214 160 LGYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVFGDPTLAAAILDRLVHHAHILELKGESYRLKE 232
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
2-243 |
1.23e-104 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 303.24 E-value: 1.23e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 2 MQHEGHVRILKSLKLFGMAHAIEELGNQNSPAFNQALPMLDSLIKAEVAEREVRSVNYQLRVAKFPVYRDLVGFDFS-QS 80
Cdd:COG1484 1 MLMEELKELLKALKLPGMAEALDELLAQAACDELSYEEFLALLLEAEVAEREQRRIERRLKAARFPAAKTLEDFDFDaQP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 81 LVNEATVKQLHRCDFMEQAQNVVLIGGPGTGKTHLATAIGTQAVMHlNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLL 160
Cdd:COG1484 81 GLDRRQILELATLDFIERGENLILLGPPGTGKTHLAIALGHEACRA-GYRVRFTTAPDLVNELKEARADGRLERLLKRLA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 161 YADLVILDELGYLPFSQTGGALLFHLLSKLYEKTSVILTTNLSFSEWSRVFGDEKMTTALLDRLTHHCHILETGNESYRF 240
Cdd:COG1484 160 KVDLLILDELGYLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEVFGDPTLATAILDRLVHHAHIIELKGESYRL 239
|
...
gi 446905993 241 KHS 243
Cdd:COG1484 240 KEA 242
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
11-246 |
6.95e-89 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 263.54 E-value: 6.95e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 11 LKSLKLFGMAHAIEELGNQNSPAFNQALPMLDSLIKAEVAEREVRSVNYQLRVAKFPVYRDLVGFDFS-QSLVNEATVKQ 89
Cdd:pfam01695 3 LKQLKLPGMAEAWEELSQQAASTSLSYEEFLEHLLEEELAWRDTRRLERLLRMAKLPPHKTLEDFDFTfAPGLDQRIVAE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 90 LHRCDFMEQAQNVVLIGGPGTGKTHLATAIGTQAVMHlNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLYADLVILDE 169
Cdd:pfam01695 83 LASLSFIDRAQNVVLLGPPGVGKTHLAIALGVEACRA-GYSVRFTSAADLVNQLKRAHGDGKLTRKLQQLLKPDVLILDE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446905993 170 LGYLPFSQTGGALLFHLLSKLYEKTSVILTTNLSFSEWSRVFGDEKMTTALLDRLTHHCHILETGNESYRFKHSSTQ 246
Cdd:pfam01695 162 WGYLPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVFGDAVLATAILDRLLHHCHIVPIKGESYRLKTKSEA 238
|
|
| PRK09183 |
PRK09183 |
transposase/IS protein; Provisional |
1-242 |
7.18e-58 |
|
transposase/IS protein; Provisional
Pssm-ID: 181681 Cd Length: 259 Bit Score: 184.91 E-value: 7.18e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 1 MM--QHEGHVRILKSLKLFGMAHAIEELGNQNSPAFNQALPMLDSLIKAEVAEREVRSVNYQLRVAKFPVYRDLVGFDFS 78
Cdd:PRK09183 1 MMelQHQRLMALCGQLQLESLISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 79 -QSLVNEATVKQLHRCDFMEQAQNVVLIGGPGTGKTHLATAIGTQAVMhLNRRVRFFSTVDLVNALEQEKSSGRQGQIAN 157
Cdd:PRK09183 81 fATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVR-AGIKVRFTTAADLLLQLSTAQRQGRYKTTLQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 158 RLLYA-DLVILDELGYLPFSQTGGALLFHLLSKLYEKTSVILTTNLSFSEWSRVF-GDEKMTTALLDRLTHHCHILETGN 235
Cdd:PRK09183 160 RGVMApRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFaGDAALTSAMLDRLLHHSHVVQIKG 239
|
....*..
gi 446905993 236 ESYRFKH 242
Cdd:PRK09183 240 ESYRLKQ 246
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
101-230 |
2.47e-10 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 57.54 E-value: 2.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 101 NVVLIGGPGTGKTHLATAIGTQAVmhlNRRVRFFS------TVDLVNALEQEKSSGRQGQIANRLLYADLVILDELGYLP 174
Cdd:cd00009 21 NLLLYGPPGTGKTTLARAIANELF---RPGAPFLYlnasdlLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 175 FS-QTGGALLFHLLSKL---YEKTSVILTTNLSFsewsrvfgDEKMTTALLDRLTHHCHI 230
Cdd:cd00009 98 RGaQNALLRVLETLNDLridRENVRVIGATNRPL--------LGDLDRALYDRLDIRIVI 149
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
100-202 |
3.17e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 48.52 E-value: 3.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 100 QNVVLIGGPGTGKTHLATAIGTQAVM-----------HLNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLYA---DLV 165
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPpgggviyidgeDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKlkpDVL 82
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 446905993 166 ILDELGYLPFSQTGGALLF------HLLSKLYEKTSVILTTNL 202
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLleelrlLLLLKSEKNLTVILTTND 125
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
106-193 |
1.11e-05 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 45.98 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 106 GGPGTGKTHLATAIGTQAV-MHLNRRVRFFS----TVDLVNALEQEKSSgrqgQIANRLLYADLVILDELGYL---PFSQ 177
Cdd:TIGR00362 144 GGVGLGKTHLLHAIGNEILeNNPNAKVLYVSsekfTNDFVNALRNNKME----EFKEKYRSVDLLLIDDIQFLagkERTQ 219
|
90
....*....|....*.
gi 446905993 178 TggaLLFHLLSKLYEK 193
Cdd:TIGR00362 220 E---EFFHTFNALHEN 232
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
11-242 |
3.73e-115 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 329.82 E-value: 3.73e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 11 LKSLKLFGMAHAIEELGNQNSPAFNQALPMLDSLIKAEVAEREVRSVNYQLRVAKFPVYRDLVGFDFS-QSLVNEATVKQ 89
Cdd:NF038214 1 LRQLKLPGMARALEELAEQAAREELSFEEFLALLLEAELAERENRRIERRLKRARFPAAKTLEDFDFTaAPGLDKAQIRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 90 LHRCDFMEQAQNVVLIGGPGTGKTHLATAIGTQAVMHlNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLYADLVILDE 169
Cdd:NF038214 81 LATLDFIERAENVLLLGPPGTGKTHLAIALGYAACRQ-GYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDE 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446905993 170 LGYLPFSQTGGALLFHLLSKLYEKTSVILTTNLSFSEWSRVFGDEKMTTALLDRLTHHCHILETGNESYRFKH 242
Cdd:NF038214 160 LGYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVFGDPTLAAAILDRLVHHAHILELKGESYRLKE 232
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
2-243 |
1.23e-104 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 303.24 E-value: 1.23e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 2 MQHEGHVRILKSLKLFGMAHAIEELGNQNSPAFNQALPMLDSLIKAEVAEREVRSVNYQLRVAKFPVYRDLVGFDFS-QS 80
Cdd:COG1484 1 MLMEELKELLKALKLPGMAEALDELLAQAACDELSYEEFLALLLEAEVAEREQRRIERRLKAARFPAAKTLEDFDFDaQP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 81 LVNEATVKQLHRCDFMEQAQNVVLIGGPGTGKTHLATAIGTQAVMHlNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLL 160
Cdd:COG1484 81 GLDRRQILELATLDFIERGENLILLGPPGTGKTHLAIALGHEACRA-GYRVRFTTAPDLVNELKEARADGRLERLLKRLA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 161 YADLVILDELGYLPFSQTGGALLFHLLSKLYEKTSVILTTNLSFSEWSRVFGDEKMTTALLDRLTHHCHILETGNESYRF 240
Cdd:COG1484 160 KVDLLILDELGYLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEVFGDPTLATAILDRLVHHAHIIELKGESYRL 239
|
...
gi 446905993 241 KHS 243
Cdd:COG1484 240 KEA 242
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
11-246 |
6.95e-89 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 263.54 E-value: 6.95e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 11 LKSLKLFGMAHAIEELGNQNSPAFNQALPMLDSLIKAEVAEREVRSVNYQLRVAKFPVYRDLVGFDFS-QSLVNEATVKQ 89
Cdd:pfam01695 3 LKQLKLPGMAEAWEELSQQAASTSLSYEEFLEHLLEEELAWRDTRRLERLLRMAKLPPHKTLEDFDFTfAPGLDQRIVAE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 90 LHRCDFMEQAQNVVLIGGPGTGKTHLATAIGTQAVMHlNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLYADLVILDE 169
Cdd:pfam01695 83 LASLSFIDRAQNVVLLGPPGVGKTHLAIALGVEACRA-GYSVRFTSAADLVNQLKRAHGDGKLTRKLQQLLKPDVLILDE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446905993 170 LGYLPFSQTGGALLFHLLSKLYEKTSVILTTNLSFSEWSRVFGDEKMTTALLDRLTHHCHILETGNESYRFKHSSTQ 246
Cdd:pfam01695 162 WGYLPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVFGDAVLATAILDRLLHHCHIVPIKGESYRLKTKSEA 238
|
|
| PRK09183 |
PRK09183 |
transposase/IS protein; Provisional |
1-242 |
7.18e-58 |
|
transposase/IS protein; Provisional
Pssm-ID: 181681 Cd Length: 259 Bit Score: 184.91 E-value: 7.18e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 1 MM--QHEGHVRILKSLKLFGMAHAIEELGNQNSPAFNQALPMLDSLIKAEVAEREVRSVNYQLRVAKFPVYRDLVGFDFS 78
Cdd:PRK09183 1 MMelQHQRLMALCGQLQLESLISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 79 -QSLVNEATVKQLHRCDFMEQAQNVVLIGGPGTGKTHLATAIGTQAVMhLNRRVRFFSTVDLVNALEQEKSSGRQGQIAN 157
Cdd:PRK09183 81 fATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVR-AGIKVRFTTAADLLLQLSTAQRQGRYKTTLQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 158 RLLYA-DLVILDELGYLPFSQTGGALLFHLLSKLYEKTSVILTTNLSFSEWSRVF-GDEKMTTALLDRLTHHCHILETGN 235
Cdd:PRK09183 160 RGVMApRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFaGDAALTSAMLDRLLHHSHVVQIKG 239
|
....*..
gi 446905993 236 ESYRFKH 242
Cdd:PRK09183 240 ESYRLKQ 246
|
|
| PRK06526 |
PRK06526 |
transposase; Provisional |
12-241 |
3.08e-46 |
|
transposase; Provisional
Pssm-ID: 180607 Cd Length: 254 Bit Score: 155.03 E-value: 3.08e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 12 KSLKLFGMAHAIEELGNQNSPAFNQALPMLDSLIKAEVAEREVRSVNYQLRVAKFPVYRDLVGFDFS-QSLVNEATVKQL 90
Cdd:PRK06526 10 RALKAPTLAGAVERLAERARAESWSHEEFLAACLQREVAARESHGGEGRIRAARFPARKSLEEFDFDhQRSLKRDTIAHL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 91 HRCDFMEQAQNVVLIGGPGTGKTHLATAIGTQAVmHLNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLYADLVILDEL 170
Cdd:PRK06526 90 GTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRAC-QAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEV 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446905993 171 GYLPFSQTGGALLFHLLSKLYEKTSVILTTNLSFSEWSRVFGDEKMTTALLDRLTHHCHILETGNESYRFK 241
Cdd:PRK06526 169 GYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYRLK 239
|
|
| PRK08181 |
PRK08181 |
transposase; Validated |
37-239 |
5.64e-42 |
|
transposase; Validated
Pssm-ID: 136670 [Multi-domain] Cd Length: 269 Bit Score: 144.30 E-value: 5.64e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 37 ALPMLDSLIKAEVAEREVRSVNYQLRVAKFPVYRDLVGFDFSQ-SLVNEATVKQLHRCD-FMEQAQNVVLIGGPGTGKTH 114
Cdd:PRK08181 42 AARFLAAIAEHELAERARRRIERHLAEAHLPPGKTLDSFDFEAvPMVSKAQVMAIAAGDsWLAKGANLLLFGPPGGGKSH 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 115 LATAIGTqAVMHLNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLYADLVILDELGYLPFSQTGGALLFHLLSKLYEKT 194
Cdd:PRK08181 122 LAAAIGL-ALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERR 200
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 446905993 195 SVILTTNLSFSEWSRVFGDEKMTTALLDRLTHHCHILETGNESYR 239
Cdd:PRK08181 201 SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYR 245
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
98-259 |
8.70e-11 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 60.80 E-value: 8.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 98 QAQNVVLI--GGPGTGKTHLATAIgTQAVMHLNRRVRFFSTVDLVNALEQE-KSSGRQG--QIANRLLYADLVILDELGY 172
Cdd:PRK08116 111 KKENVGLLlwGSVGTGKTYLAACI-ANELIEKGVPVIFVNFPQLLNRIKSTyKSSGKEDenEIIRSLVNADLLILDDLGA 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 173 LpfSQTGGAL--LFHLLSKLY-EKTSVILTTNLSFSEWSrvfgdEKMTTALLDRLTHHCHILETGNESYRfkhsstqnkq 249
Cdd:PRK08116 190 E--RDTEWARekVYNIIDSRYrKGLPTIVTTNLSLEELK-----NQYGKRIYDRILEMCTPVENEGKSYR---------- 252
|
170
....*....|
gi 446905993 250 EEKQTRKLKI 259
Cdd:PRK08116 253 KEIAKEKLQR 262
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
101-230 |
2.47e-10 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 57.54 E-value: 2.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 101 NVVLIGGPGTGKTHLATAIGTQAVmhlNRRVRFFS------TVDLVNALEQEKSSGRQGQIANRLLYADLVILDELGYLP 174
Cdd:cd00009 21 NLLLYGPPGTGKTTLARAIANELF---RPGAPFLYlnasdlLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 175 FS-QTGGALLFHLLSKL---YEKTSVILTTNLSFsewsrvfgDEKMTTALLDRLTHHCHI 230
Cdd:cd00009 98 RGaQNALLRVLETLNDLridRENVRVIGATNRPL--------LGDLDRALYDRLDIRIVI 149
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
53-239 |
1.07e-09 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 57.15 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 53 EVRSVNYQLRVAKfpvyrdlvgfdfsqsLVNEATVKQLHR-CDF-------------MEQAQ-----------NVVLIGG 107
Cdd:PRK12377 45 EINRQNQQLRVEK---------------ILNRSGIQPLHRkCSFanyqvqndgqryaLSQAKsiadelmtgctNFVFSGK 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 108 PGTGKTHLATAIGTQaVMHLNRRVRFFSTVDLVNALEQEKSSGRQGQ-IANRLLYADLVILDELGYLPFSQTGGALLFHL 186
Cdd:PRK12377 110 PGTGKNHLAAAIGNR-LLAKGRSVIVVTVPDVMSRLHESYDNGQSGEkFLQELCKVDLLVLDEIGIQRETKNEQVVLNQI 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446905993 187 LS-KLYEKTSVILTTNLSFSEWSRVFGDEKMttallDRLTHHCHILETGN-ESYR 239
Cdd:PRK12377 189 IDrRTASMRSVGMLTNLNHEAMSTLLGERVM-----DRMTMNGGRWVNFNwESWR 238
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
102-199 |
1.12e-08 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 54.81 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 102 VVLIGGPGTGKTHLATAIGTQAV-MHLNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLYADLVILD---ELGYLPFSQ 177
Cdd:COG0593 37 LFLYGGVGLGKTHLLHAIGNEALeNNPGARVVYLTAEEFTNDFINAIRNNTIEEFKEKYRSVDVLLIDdiqFLAGKEATQ 116
|
90 100
....*....|....*....|...
gi 446905993 178 TGgalLFHLLSKLYE-KTSVILT 199
Cdd:COG0593 117 EE---FFHTFNALREaGKQIVLT 136
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
94-206 |
1.45e-08 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 54.52 E-value: 1.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 94 DFMEQAQNVVLIGGPGTGKTHLATAIGtQAVMHLNRRVRFFSTVDLVNALEQEKSSGRQG--QIANRLLYADLVILDELG 171
Cdd:PRK06835 178 NFDKNNENLLFYGNTGTGKTFLSNCIA-KELLDRGKSVIYRTADELIEILREIRFNNDKEleEVYDLLINCDLLIIDDLG 256
|
90 100 110
....*....|....*....|....*....|....*.
gi 446905993 172 YLPFSQTGGALLFHLL-SKLYEKTSVILTTNLSFSE 206
Cdd:PRK06835 257 TEKITEFSKSELFNLInKRLLRQKKMIISTNLSLEE 292
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
100-202 |
3.17e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 48.52 E-value: 3.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 100 QNVVLIGGPGTGKTHLATAIGTQAVM-----------HLNRRVRFFSTVDLVNALEQEKSSGRQGQIANRLLYA---DLV 165
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPpgggviyidgeDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKlkpDVL 82
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 446905993 166 ILDELGYLPFSQTGGALLF------HLLSKLYEKTSVILTTNL 202
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLleelrlLLLLKSEKNLTVILTTND 125
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
97-217 |
1.97e-06 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 48.31 E-value: 1.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 97 EQAQNVVLIGGPGTGKTHLATAIGTQAVMHLNRRVRFFSTV---------------DLVNALEQEKSSGRQG-------- 153
Cdd:COG1474 49 ERPSNVLIYGPTGTGKTAVAKYVLEELEEEAEERGVDVRVVyvncrqastryrvlsRILEELGSGEDIPSTGlstdelfd 128
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446905993 154 QIANRLLYAD---LVILDELGYLPFSQTGGALLFhlLSKLYE-----KTSVILTTN-LSFSEW--SRV---FGDEKMT 217
Cdd:COG1474 129 RLYEALDERDgvlVVVLDEIDYLVDDEGDDLLYQ--LLRANEelegaRVGVIGISNdLEFLENldPRVkssLGEEEIV 204
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
106-193 |
1.11e-05 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 45.98 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 106 GGPGTGKTHLATAIGTQAV-MHLNRRVRFFS----TVDLVNALEQEKSSgrqgQIANRLLYADLVILDELGYL---PFSQ 177
Cdd:TIGR00362 144 GGVGLGKTHLLHAIGNEILeNNPNAKVLYVSsekfTNDFVNALRNNKME----EFKEKYRSVDLLLIDDIQFLagkERTQ 219
|
90
....*....|....*.
gi 446905993 178 TggaLLFHLLSKLYEK 193
Cdd:TIGR00362 220 E---EFFHTFNALHEN 232
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
101-192 |
1.92e-05 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 44.63 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 101 NVVLI-GGPGTGKTHLATAIGTQAV-MHLNRRVRFFS----TVDLVNALEQEKSSgrqgQIANRLLYADLVILDELGYLP 174
Cdd:pfam00308 35 NPLFIyGGVGLGKTHLLHAIGNYALqNAPNLRVVYLTaeefLNDFVDAIRDNKTN----QFKEKYRNVDVLLIDDIQFLA 110
|
90
....*....|....*...
gi 446905993 175 FSQTGGALLFHLLSKLYE 192
Cdd:pfam00308 111 GKEGTQEEFFHTFNALHE 128
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
103-239 |
4.28e-05 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 43.60 E-value: 4.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 103 VLIGGPGTGKTHLATAIGTQAVMHlNRRVRFFSTVDLVNALEQ--EKSSGRQGQIANRLLYADLVILDELGYLPFSQTGG 180
Cdd:PRK07952 103 IFSGKPGTGKNHLAAAICNELLLR-GKSVLIITVADIMSAMKDtfSNSETSEEQLLNDLSNVDLLVIDEIGVQTESRYEK 181
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446905993 181 ALLFHLLSKLY-EKTSVILTTNLSFSEWSRVFGDEKMttallDRLTHHCHILETGN-ESYR 239
Cdd:PRK07952 182 VIINQIVDRRSsSKRPTGMLTNSNMEEMTKLLGERVM-----DRMRLGNSLWVIFNwDSYR 237
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
106-168 |
1.22e-04 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 42.81 E-value: 1.22e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446905993 106 GGPGTGKTHLATAIGTQAV-MHLNRRVRFFS----TVDLVNALeqekssgRQGQIA---NRLLYADLVILD 168
Cdd:PRK00149 106 GGVGLGKTHLLHAIGNYILeKNPNAKVVYVTsekfTNDFVNAL-------RNNTMEefkEKYRSVDVLLID 169
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
102-227 |
1.38e-04 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 40.65 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 102 VVLIGGPGTGKTHLATAIGTQavmhLNRRVRFFSTVDLVNALEQEKSSgrqgQIANRLLYA-----DLVILDEL------ 170
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKE----LGAPFIEISGSELVSKYVGESEK----RLRELFEAAkklapCVIFIDEIdalags 72
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446905993 171 ----GYLPFSQTGGALLFHL--LSKLYEKTSVILTTNLSfsewsrvfgdEKMTTALLDRLTHH 227
Cdd:pfam00004 73 rgsgGDSESRRVVNQLLTELdgFTSSNSKVIVIAATNRP----------DKLDPALLGRFDRI 125
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
41-127 |
3.84e-04 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 41.44 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 41 LDSLIKAEVAEREVRSVNYQLRVAKFPVYRDLVGFDFSQSLVNEATVKQLHRCDFMEQAQ-----NVVLIGGPGTGKTHL 115
Cdd:COG0464 128 ALALAAPLVTYEDIGGLEEELLELREAILDDLGGLEEVKEELRELVALPLKRPELREEYGlppprGLLLYGPPGTGKTLL 207
|
90
....*....|..
gi 446905993 116 ATAIGTQAVMHL 127
Cdd:COG0464 208 ARALAGELGLPL 219
|
|
| AAA_19 |
pfam13245 |
AAA domain; |
98-198 |
4.26e-04 |
|
AAA domain;
Pssm-ID: 433059 [Multi-domain] Cd Length: 136 Bit Score: 39.51 E-value: 4.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 98 QAQNVVLIGGPGTGKTHLATAIgtqaVMHLNRRVRFFSTVDLVN-----ALEQEKSSGRQGQIANRLL------------ 160
Cdd:pfam13245 10 PSKVVLLTGGPGTGKTTTIRHI----VALLVALGGVSFPILLAAptgraAKRLSERTGLPASTIHRLLgfddleaggflr 85
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 446905993 161 ------YADLVILDElgylpFSQTGGALLFHLLSKLYEKTSVIL 198
Cdd:pfam13245 86 deeeplDGDLLIVDE-----FSMVDLPLAYRLLKALPDGAQLLL 124
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
80-198 |
5.77e-04 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 40.32 E-value: 5.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 80 SLVNEATVKQLHrcDFMEQAQN----VVLIGGPGTGKTHLAtaigtQAVMHLNRRVRFF------STVDLVNALEQE--- 146
Cdd:COG2842 29 SFVETKNVRRFA--EALDEARAlpgiGVVYGESGVGKTTAA-----REYANRNPNVIYVtaspswTSKELLEELAEElgi 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 147 -KSSGRQGQIANRLLYA-----DLVILDELGYLPFSqtggalLFHLLSKLYEKT--SVIL 198
Cdd:COG2842 102 pAPPGTIADLRDRILERlagtgRLLIIDEADHLKPK------ALEELRDIHDETgvGVVL 155
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
97-198 |
6.70e-04 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 40.73 E-value: 6.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 97 EQAQNVVLIGGPGTGKTHLATAIgTQAVMHLNRRVRFF------------------STVDlvNALEQEKSSGRQGQIANR 158
Cdd:COG0507 138 TTRRVSVLTGGAGTGKTTTLRAL-LAALEALGLRVALAaptgkaakrlsestgieaRTIH--RLLGLRPDSGRFRHNRDN 214
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 446905993 159 LLY-ADLVILDElgylpFSQTGGALLFHLLSKLYEK-TSVIL 198
Cdd:COG0507 215 PLTpADLLVVDE-----ASMVDTRLMAALLEALPRAgARLIL 251
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
101-127 |
9.27e-04 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 38.80 E-value: 9.27e-04
10 20
....*....|....*....|....*..
gi 446905993 101 NVVLIGGPGTGKTHLATAIGTQAVMHL 127
Cdd:cd19481 28 GILLYGPPGTGKTLLAKALAGELGLPL 54
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
102-135 |
1.94e-03 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 37.98 E-value: 1.94e-03
10 20 30
....*....|....*....|....*....|....
gi 446905993 102 VVLIGGPGTGKTHLATAIGTQAvmhlnrRVRFFS 135
Cdd:cd19501 40 VLLVGPPGTGKTLLAKAVAGEA------GVPFFS 67
|
|
| RecA-like_KTNA1 |
cd19522 |
Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is ... |
71-122 |
2.30e-03 |
|
Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is the catalytic subunit of the Katanin complex which is severs microtubules in an ATP-dependent manner, and is implicated in multiple aspects of microtubule dynamics. In addition to the p60 catalytic ATPase subunit, Katanin contains an accessory subunit (p80 or p80-like). The microtubule-severing activity of the ATPase is essential for female meiotic spindle assembly, and male gamete production; and the katanin complex severing microtubules is under tight regulation during the transition from the meiotic to mitotic stage to allow proper embryogenesis. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410930 [Multi-domain] Cd Length: 170 Bit Score: 38.04 E-value: 2.30e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 446905993 71 DLVGFDFSQSLVNEATVKQLHRCDFMEQA----QNVVLIGGPGTGKTHLATAIGTQ 122
Cdd:cd19522 1 DIADLEEAKKLLEEAVVLPMWMPEFFKGIrrpwKGVLMVGPPGTGKTLLAKAVATE 56
|
|
| COG3911 |
COG3911 |
Predicted ATPase [General function prediction only]; |
102-166 |
2.45e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443117 Cd Length: 180 Bit Score: 37.87 E-value: 2.45e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446905993 102 VVLIGGPGTGKTHLATAIGTQ--AVMH-LNRRVrffstvdlvnALEQEKSSGRQGQIANRLLYADLVI 166
Cdd:COG3911 6 IVITGGPGSGKTTLLNALARRgyACVPeAGREI----------IREQQAIGGDALPWTDPAAFAELML 63
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
101-232 |
3.29e-03 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 38.53 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 101 NVVLIGGPGTGKTHLATAIGTQavmhLNRRVRFFSTV-----DLVNALEQEKSSGRQGQianrllyADLVILDELGYLPF 175
Cdd:PRK13342 38 SMILWGPPGTGKTTLARIIAGA----TDAPFEALSAVtsgvkDLREVIEEARQRRSAGR-------RTILFIDEIHRFNK 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446905993 176 SQTgGALLFHLlsklyEKTSVIL---TT-NLSFSewsrvfgdekMTTALLDRlthhCHILE 232
Cdd:PRK13342 107 AQQ-DALLPHV-----EDGTITLigaTTeNPSFE----------VNPALLSR----AQVFE 147
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
90-134 |
4.62e-03 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 38.05 E-value: 4.62e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 446905993 90 LHRCDFMEQAQNVVLIGGPGTGK-THLATAIGTQAVMHLNRRVRFF 134
Cdd:TIGR03925 70 PLVVDLSGAAGHVAIVGAPQSGKsTALRTLILALALTHTPEEVQFY 115
|
|
| McrB |
COG1401 |
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ... |
82-116 |
6.19e-03 |
|
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];
Pssm-ID: 441011 [Multi-domain] Cd Length: 477 Bit Score: 37.83 E-value: 6.19e-03
10 20 30
....*....|....*....|....*....|....*
gi 446905993 82 VNEATVKQLHRCdfMEQAQNVVLIGGPGTGKTHLA 116
Cdd:COG1401 206 KFEETLEAFLAA--LKTKKNVILAGPPGTGKTYLA 238
|
|
| PhoH |
pfam02562 |
PhoH-like protein; PhoH is a cytoplasmic protein and predicted ATPase that is induced by ... |
86-132 |
6.54e-03 |
|
PhoH-like protein; PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Pssm-ID: 460592 [Multi-domain] Cd Length: 204 Bit Score: 36.69 E-value: 6.54e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 446905993 86 TVKQLHRCDFMEQAQNVVLIGGPGTGKTHLATAIGTQAVMhlNRRVR 132
Cdd:pfam02562 5 TLGQKRYVEAIKKNDIVFGIGPAGTGKTYLAVAMAVDALK--NGKVK 49
|
|
| DEXXQc_SF1 |
cd18043 |
DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are ... |
76-169 |
6.97e-03 |
|
DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are nucleic acid motor proteins that couple ATP hydrolysis to translocation along with the concomitant unwinding of DNA or RNA. This is central to many aspects of cellular DNA and RNA metabolism and accordingly, they are implicated in a wide range of nucleic acid processing events including DNA replication, recombination, and repair as well as many aspects of RNA metabolism. Superfamily 1 helicases are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350801 [Multi-domain] Cd Length: 127 Bit Score: 35.64 E-value: 6.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446905993 76 DFSQslvnEATVKQLhrcdfmEQAQNVVLIGGPGTGKTHLATAIGTQAVMHlNRRVRFFST------VDLVNALEQEKSS 149
Cdd:cd18043 1 DSSQ----EAAIISA------RNGKNVVIQGPPGTGKSQTIANIIANALAR-GKRVLFVSEkkaaldVVRFPCWIMSPLS 69
|
90 100
....*....|....*....|
gi 446905993 150 GRQGQIANRLLYaDLVILDE 169
Cdd:cd18043 70 VSQYLPLNRNLF-DLVIFDE 88
|
|
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