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Conserved domains on  [gi|485717413|ref|WP_001349198|]
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MULTISPECIES: insertion element protein, partial [Enterobacterales]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS1 super family cl41321
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ...
 8-40 3.43e-10

IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.


The actual alignment was detected with superfamily member NF033558:

Pssm-ID: 468085 [Multi-domain]  Cd Length: 199  Bit Score: 51.12  E-value: 3.43e-10
                         10        20        30
                 ....*....|....*....|....*....|...
gi 485717413   8 CPSCsATDGVVRNGKSTAGHQRYLCSHCRKTWQ 40
Cdd:NF033558   1 CPRC-QSDNVVKNGKSVRGKQRYRCKDCGRQFQ 32
 
Name Accession Description Interval E-value
transpos_IS1 NF033558
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ...
 8-40 3.43e-10

IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.


Pssm-ID: 468085 [Multi-domain]  Cd Length: 199  Bit Score: 51.12  E-value: 3.43e-10
                         10        20        30
                 ....*....|....*....|....*....|...
gi 485717413   8 CPSCsATDGVVRNGKSTAGHQRYLCSHCRKTWQ 40
Cdd:NF033558   1 CPRC-QSDNVVKNGKSVRGKQRYRCKDCGRQFQ 32
InsA COG3677
Transposase InsA [Mobilome: prophages, transposons];
1-40 9.08e-09

Transposase InsA [Mobilome: prophages, transposons];


Pssm-ID: 442893 [Multi-domain]  Cd Length: 241  Bit Score: 47.94  E-value: 9.08e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 485717413   1 MASVSISCPSCSATDgVVRNGKSTAGHQRYLCSHCRKTWQ 40
Cdd:COG3677   12 RWPNGPVCPHCGSTR-IVKNGKTRNGRQRYRCKDCGRTFT 50
Zn_Tnp_IS1 pfam03811
InsA N-terminal domain; This appears to be a short zinc binding domain found in IS1 InsA ...
 1-36 2.99e-08

InsA N-terminal domain; This appears to be a short zinc binding domain found in IS1 InsA family protein. It is found at the N-terminus of the protein and may be a DNA-binding domain.


Pssm-ID: 281762 [Multi-domain]  Cd Length: 35  Bit Score: 43.35  E-value: 2.99e-08
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 485717413   1 MASVSISCPSCSATDgVVRNGKSTAGHQRYLCSHCR 36
Cdd:pfam03811  1 MASVSIHCPRCSSTD-VYRHGKSTAGHQRFRCRHCR 35
transpos_ISL3 NF033550
ISL3 family transposase;
7-40 4.72e-03

ISL3 family transposase;


Pssm-ID: 468079 [Multi-domain]  Cd Length: 369  Bit Score: 31.79  E-value: 4.72e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 485717413   7 SCPSC-SATDGVVRNGKSTAGH--------------QRYLCSHCRKTWQ 40
Cdd:NF033550  12 TCPECgKPSRRVHDTGKRRIRHlpifgrpvylelrvRRFKCPECGKTFT 60
 
Name Accession Description Interval E-value
transpos_IS1 NF033558
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ...
 8-40 3.43e-10

IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.


Pssm-ID: 468085 [Multi-domain]  Cd Length: 199  Bit Score: 51.12  E-value: 3.43e-10
                         10        20        30
                 ....*....|....*....|....*....|...
gi 485717413   8 CPSCsATDGVVRNGKSTAGHQRYLCSHCRKTWQ 40
Cdd:NF033558   1 CPRC-QSDNVVKNGKSVRGKQRYRCKDCGRQFQ 32
InsA COG3677
Transposase InsA [Mobilome: prophages, transposons];
1-40 9.08e-09

Transposase InsA [Mobilome: prophages, transposons];


Pssm-ID: 442893 [Multi-domain]  Cd Length: 241  Bit Score: 47.94  E-value: 9.08e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 485717413   1 MASVSISCPSCSATDgVVRNGKSTAGHQRYLCSHCRKTWQ 40
Cdd:COG3677   12 RWPNGPVCPHCGSTR-IVKNGKTRNGRQRYRCKDCGRTFT 50
Zn_Tnp_IS1 pfam03811
InsA N-terminal domain; This appears to be a short zinc binding domain found in IS1 InsA ...
 1-36 2.99e-08

InsA N-terminal domain; This appears to be a short zinc binding domain found in IS1 InsA family protein. It is found at the N-terminus of the protein and may be a DNA-binding domain.


Pssm-ID: 281762 [Multi-domain]  Cd Length: 35  Bit Score: 43.35  E-value: 2.99e-08
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 485717413   1 MASVSISCPSCSATDgVVRNGKSTAGHQRYLCSHCR 36
Cdd:pfam03811  1 MASVSIHCPRCSSTD-VYRHGKSTAGHQRFRCRHCR 35
transpos_ISL3 NF033550
ISL3 family transposase;
7-40 4.72e-03

ISL3 family transposase;


Pssm-ID: 468079 [Multi-domain]  Cd Length: 369  Bit Score: 31.79  E-value: 4.72e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 485717413   7 SCPSC-SATDGVVRNGKSTAGH--------------QRYLCSHCRKTWQ 40
Cdd:NF033550  12 TCPECgKPSRRVHDTGKRRIRHlpifgrpvylelrvRRFKCPECGKTFT 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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