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Conserved domains on  [gi|487730061|ref|WP_001814293|]
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AAA family ATPase [Staphylococcus aureus]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 241-540 1.13e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 55.33  E-value: 1.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 241 RYAIIKQEIEQLENE----RIDIQNGKEEiNLRNQLADKQSELKRIE------DNNSASNENKIHTLTNELHVENGTVAN 310
Cdd:COG1196  214 RYRELKEELKELEAEllllKLRELEAELE-ELEAELEELEAELEELEaelaelEAELEELRLELEELELELEEAQAEEYE 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 311 LKTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKfEYLDDNVCSCCGQQLPAEQVNEAREKALQKFNASKSKEL 390
Cdd:COG1196  293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL-EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 391 ETIQTSINHIISEGKKikpiIEKLEDDNNNLQIKINEAEERSARIQNKINKLKtthvdvtqtDEYKAVMLEINEINQKRS 470
Cdd:COG1196  372 AELAEAEEELEELAEE----LLEALRAAAELAAQLEELEEAEEALLERLERLE---------EELEELEEALAELEEEEE 438

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 487730061 471 NIRKTIQDNVSGIDDKISELTQEKSEI----EVSRSIEKSNKHLDDVISELRNEEDRLLDEKEKYSHDLYILKE 540
Cdd:COG1196  439 EEEEALEEAAEEEAELEEEEEALLELLaellEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 241-540 1.13e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 55.33  E-value: 1.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 241 RYAIIKQEIEQLENE----RIDIQNGKEEiNLRNQLADKQSELKRIE------DNNSASNENKIHTLTNELHVENGTVAN 310
Cdd:COG1196  214 RYRELKEELKELEAEllllKLRELEAELE-ELEAELEELEAELEELEaelaelEAELEELRLELEELELELEEAQAEEYE 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 311 LKTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKfEYLDDNVCSCCGQQLPAEQVNEAREKALQKFNASKSKEL 390
Cdd:COG1196  293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL-EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 391 ETIQTSINHIISEGKKikpiIEKLEDDNNNLQIKINEAEERSARIQNKINKLKtthvdvtqtDEYKAVMLEINEINQKRS 470
Cdd:COG1196  372 AELAEAEEELEELAEE----LLEALRAAAELAAQLEELEEAEEALLERLERLE---------EELEELEEALAELEEEEE 438

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 487730061 471 NIRKTIQDNVSGIDDKISELTQEKSEI----EVSRSIEKSNKHLDDVISELRNEEDRLLDEKEKYSHDLYILKE 540
Cdd:COG1196  439 EEEEALEEAAEEEAELEEEEEALLELLaellEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 187-523 5.65e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 53.15  E-value: 5.65e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061   187 FKELNNILGDHE---IETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVpefdNDRYAIIKQEIEQLeNERIDIQNGK 263
Cdd:TIGR02169  213 YQALLKEKREYEgyeLLKEKEALERQKEAIERQLASLEEELEKLTEEISEL----EKRLEEIEQLLEEL-NKKIKDLGEE 287

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061   264 EEINLRNQLADKQSELKRIEDNNSASNEnkihtltnelhvengtvanlktRLKQNKQQITHEENRRNQLLENHKGLKSDL 343
Cdd:TIGR02169  288 EQLRVKEKIGELEAEIASLERSIAEKER----------------------ELEDAEERLAKLEAEIDKLLAEIEELEREI 345

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061   344 EKAKNQKfeylddnvcsccgqqlpaEQVNEAREKALQKFNASKSkELETIQTSINHIISEGKKIKPIIEKLEDDNNNLQI 423
Cdd:TIGR02169  346 EEERKRR------------------DKLTEEYAELKEELEDLRA-ELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061   424 ----KINEAEERSARIQNKINKLKTTHVDVTQTD-EYKAVMLEINEINQKrsniRKTIQDNVSGIDDKISELTQEKSEIE 498
Cdd:TIGR02169  407 eldrLQEELQRLSEELADLNAAIAGIEAKINELEeEKEDKALEIKKQEWK----LEQLAADLSKYEQELYDLKEEYDRVE 482

                          330       340
                   ....*....|....*....|....*
gi 487730061   499 vsRSIEKSNKHLDDVISELRNEEDR 523
Cdd:TIGR02169  483 --KELSKLQRELAEAEAQARASEER 505
PRK01156 PRK01156
chromosome segregation protein; Provisional
 87-524 1.77e-05

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 47.97  E-value: 1.77e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061  87 EIDGKITTFKKESHPKYTINQKTNRKEYSRSRTKKQYINDESIKVKDY--KARIDELIDEDVFKLITNPQafNLLDWKKR 164
Cdd:PRK01156 260 TAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIenKKQILSNIDAEINKYHAIIK--KLSVLQKD 337

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 165 RSLLFEIAKPINDEDVIKTNDDFKELNNILGDHEIETKKKiltdKIKQINKDIKDIPIRINQTQQNKQDVPEFDNDRYAI 244
Cdd:PRK01156 338 YNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKK----KIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNE 413

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 245 IKQEIEQLE------NERIDIQNGKEEINLRN---------------QLADKQSELKRIEDNNSASN-ENKIHTLTNELH 302
Cdd:PRK01156 414 INVKLQDISskvsslNQRIRALRENLDELSRNmemlngqsvcpvcgtTLGEEKSNHIINHYNEKKSRlEEKIREIEIEVK 493

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 303 VENGTVANLKTRLKQ-NKQQITHEENRRNQLLENHKGLKSDLE-----KAKNQKFEYLDDNVCSCCGQQLPAE------- 369
Cdd:PRK01156 494 DIDEKIVDLKKRKEYlESEEINKSINEYNKIESARADLEDIKIkinelKDKHDKYEEIKNRYKSLKLEDLDSKrtswlna 573

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 370 --QVNEAREKALQKFNASKSKELETIQTSINHIISEGKKIKPIIE----KLEDDNNNLQIKINEAEERSA---RIQNKIN 440
Cdd:PRK01156 574 laVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDksirEIENEANNLNNKYNEIQENKIlieKLRGKID 653

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 441 KLKtthvdvTQTDEYKAVMLEINEINQKRSNIRKTIQDNVSGIDDKISELTQEKSEIEVSRSiekSNKHLDDVISELRNE 520
Cdd:PRK01156 654 NYK------KQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRT---RINELSDRINDINET 724


                 ....
gi 487730061 521 EDRL 524
Cdd:PRK01156 725 LESM 728
DUF3568 pfam12092
Protein of unknown function (DUF3568); This family of proteins is functionally uncharacterized. ...
 369-441 1.89e-04

Protein of unknown function (DUF3568); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 130 amino acids in length.


Pssm-ID: 403350  Cd Length: 124  Bit Score: 41.53  E-value: 1.89e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 487730061  369 EQVNEAREKALQKFNAS-KSKELETIQTSINHIISEGKKIKPIIEKLEDDNNNLQIKINEA--EERSARIQNKINK 441
Cdd:pfam12092  48 RSVYNATLAAIQDLNLSlVEKSKDGSSATITGKDAGDKTVFIRLEKLDDNSTKVSIRVGYFgdEQASRRLLDAIQK 123
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 241-540 1.13e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 55.33  E-value: 1.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 241 RYAIIKQEIEQLENE----RIDIQNGKEEiNLRNQLADKQSELKRIE------DNNSASNENKIHTLTNELHVENGTVAN 310
Cdd:COG1196  214 RYRELKEELKELEAEllllKLRELEAELE-ELEAELEELEAELEELEaelaelEAELEELRLELEELELELEEAQAEEYE 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 311 LKTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKfEYLDDNVCSCCGQQLPAEQVNEAREKALQKFNASKSKEL 390
Cdd:COG1196  293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL-EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 391 ETIQTSINHIISEGKKikpiIEKLEDDNNNLQIKINEAEERSARIQNKINKLKtthvdvtqtDEYKAVMLEINEINQKRS 470
Cdd:COG1196  372 AELAEAEEELEELAEE----LLEALRAAAELAAQLEELEEAEEALLERLERLE---------EELEELEEALAELEEEEE 438

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 487730061 471 NIRKTIQDNVSGIDDKISELTQEKSEI----EVSRSIEKSNKHLDDVISELRNEEDRLLDEKEKYSHDLYILKE 540
Cdd:COG1196  439 EEEEALEEAAEEEAELEEEEEALLELLaellEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 187-523 5.65e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 53.15  E-value: 5.65e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061   187 FKELNNILGDHE---IETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVpefdNDRYAIIKQEIEQLeNERIDIQNGK 263
Cdd:TIGR02169  213 YQALLKEKREYEgyeLLKEKEALERQKEAIERQLASLEEELEKLTEEISEL----EKRLEEIEQLLEEL-NKKIKDLGEE 287

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061   264 EEINLRNQLADKQSELKRIEDNNSASNEnkihtltnelhvengtvanlktRLKQNKQQITHEENRRNQLLENHKGLKSDL 343
Cdd:TIGR02169  288 EQLRVKEKIGELEAEIASLERSIAEKER----------------------ELEDAEERLAKLEAEIDKLLAEIEELEREI 345

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061   344 EKAKNQKfeylddnvcsccgqqlpaEQVNEAREKALQKFNASKSkELETIQTSINHIISEGKKIKPIIEKLEDDNNNLQI 423
Cdd:TIGR02169  346 EEERKRR------------------DKLTEEYAELKEELEDLRA-ELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061   424 ----KINEAEERSARIQNKINKLKTTHVDVTQTD-EYKAVMLEINEINQKrsniRKTIQDNVSGIDDKISELTQEKSEIE 498
Cdd:TIGR02169  407 eldrLQEELQRLSEELADLNAAIAGIEAKINELEeEKEDKALEIKKQEWK----LEQLAADLSKYEQELYDLKEEYDRVE 482

                          330       340
                   ....*....|....*....|....*
gi 487730061   499 vsRSIEKSNKHLDDVISELRNEEDR 523
Cdd:TIGR02169  483 --KELSKLQRELAEAEAQARASEER 505
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 248-524 5.95e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 49.68  E-value: 5.95e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061   248 EIEQLENERIDIQNGKEEI-NLRNQLADKQSELKR-IEDNnsasnENKIHTLTNELHVENGTVANLKTRLKQNKQQITHE 325
Cdd:TIGR02169  682 RLEGLKRELSSLQSELRRIeNRLDELSQELSDASRkIGEI-----EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061   326 EnrrnQLLENHKGLKSDLEKAKNQKFEYLDDNVCSCCGQQLPaEQVNEAREKalqkfnaskSKELETIQTSINHIISEGK 405
Cdd:TIGR02169  757 K----SELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP-EIQAELSKL---------EEEVSRIEARLREIEQKLN 822

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061   406 KIKPIIEKLEDDNNNLQIKINEAEERSARIQNKINKLKTTHVDVTQtdEYKAVMLEINEINQKRSNIRKTIQDnvsgIDD 485
Cdd:TIGR02169  823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE--ELEELEAALRDLESRLGDLKKERDE----LEA 896

                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 487730061   486 KISELTQEKSEIEVsrSIEKSNKHLDDVISELRNEEDRL 524
Cdd:TIGR02169  897 QLRELERKIEELEA--QIEKKRKRLSELKAKLEALEEEL 933
PRK01156 PRK01156
chromosome segregation protein; Provisional
 87-524 1.77e-05

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 47.97  E-value: 1.77e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061  87 EIDGKITTFKKESHPKYTINQKTNRKEYSRSRTKKQYINDESIKVKDY--KARIDELIDEDVFKLITNPQafNLLDWKKR 164
Cdd:PRK01156 260 TAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIenKKQILSNIDAEINKYHAIIK--KLSVLQKD 337

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 165 RSLLFEIAKPINDEDVIKTNDDFKELNNILGDHEIETKKKiltdKIKQINKDIKDIPIRINQTQQNKQDVPEFDNDRYAI 244
Cdd:PRK01156 338 YNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKK----KIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNE 413

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 245 IKQEIEQLE------NERIDIQNGKEEINLRN---------------QLADKQSELKRIEDNNSASN-ENKIHTLTNELH 302
Cdd:PRK01156 414 INVKLQDISskvsslNQRIRALRENLDELSRNmemlngqsvcpvcgtTLGEEKSNHIINHYNEKKSRlEEKIREIEIEVK 493

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 303 VENGTVANLKTRLKQ-NKQQITHEENRRNQLLENHKGLKSDLE-----KAKNQKFEYLDDNVCSCCGQQLPAE------- 369
Cdd:PRK01156 494 DIDEKIVDLKKRKEYlESEEINKSINEYNKIESARADLEDIKIkinelKDKHDKYEEIKNRYKSLKLEDLDSKrtswlna 573

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 370 --QVNEAREKALQKFNASKSKELETIQTSINHIISEGKKIKPIIE----KLEDDNNNLQIKINEAEERSA---RIQNKIN 440
Cdd:PRK01156 574 laVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDksirEIENEANNLNNKYNEIQENKIlieKLRGKID 653

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 441 KLKtthvdvTQTDEYKAVMLEINEINQKRSNIRKTIQDNVSGIDDKISELTQEKSEIEVSRSiekSNKHLDDVISELRNE 520
Cdd:PRK01156 654 NYK------KQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRT---RINELSDRINDINET 724


                 ....
gi 487730061 521 EDRL 524
Cdd:PRK01156 725 LESM 728
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 388-531 3.55e-05

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 45.69  E-value: 3.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 388 KELETIQTSINHIISEGKKIKPIIEKLEDDNNNLQIKINEAEERSARIQNKINKLKTThvdvtqtDEYKAVMLEINEINQ 467
Cdd:COG1579   31 AELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNN-------KEYEALQKEIESLKR 103

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 487730061 468 KRSNIRKTIQDNVSGIDDKISELTQEKSEIE-VSRSIEKSNKHLDDVISELRNEEDRLLDEKEKY 531
Cdd:COG1579  104 RISDLEDEILELMERIEELEEELAELEAELAeLEAELEEKKAELDEELAELEAELEELEAEREEL 168
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 247-498 3.91e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 46.30  E-value: 3.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 247 QEIEQLENERIDIQNGKEEinLRNQLADKQSELKRIEDNNSASnENKIHTLTNELHVENGTVANLKTRLKQNKQQITHEE 326
Cdd:COG4942   20 DAAAEAEAELEQLQQEIAE--LEKELAALKKEEKALLKQLAAL-ERRIAALARRIRALEQELAALEAELAELEKEIAELR 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 327 NRRNQllenhkglksdlekaknQKFEYlddnvcsccGQQLPAEQVNEAREKALQKFNASKSKELETIQTSINHIISEGKK 406
Cdd:COG4942   97 AELEA-----------------QKEEL---------AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARRE 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 407 ikpIIEKLEDDNNNLQIKINEAEERSARIQNKINKLKTTHVDVTQTDEYKAVMLeiNEINQKRSNIRKTI---QDNVSGI 483
Cdd:COG4942  151 ---QAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLL--ARLEKELAELAAELaelQQEAEEL 225

                        250
                 ....*....|....*
gi 487730061 484 DDKISELTQEKSEIE 498
Cdd:COG4942  226 EALIARLEAEAAAAA 240
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
237-513 9.85e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.68  E-value: 9.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061  237 FDNDRY-AIIKQEIEQLENERIDIQNGKEEIN-LRNQLADKQSELKRI-----EDNNSASNENKIHTLTNELH---VENG 306
Cdd:COG4913   606 FDNRAKlAALEAELAELEEELAEAEERLEALEaELDALQERREALQRLaeyswDEIDVASAEREIAELEAELErldASSD 685

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061  307 TVANLKTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKFEYLDDNvcsccgQQLPAEQVNEAREKALQKFNASK 386
Cdd:COG4913   686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL------EAAEDLARLELRALLEERFAAAL 759

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061  387 SKELEtiqtsinhiisegkkiKPIIEKLEDDNNNLQIKINEAEERSARIQNKINK---LKTTHVDVT--QTDEYKAVM-- 459
Cdd:COG4913   760 GDAVE----------------RELRENLEERIDALRARLNRAEEELERAMRAFNRewpAETADLDADleSLPEYLALLdr 823

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 487730061  460 LEINEINQKRSNIRKTIQDNVSG-IDDKISELTQEKSEIEvsRSIEKSNKHLDDV 513
Cdd:COG4913   824 LEEDGLPEYEERFKELLNENSIEfVADLLSKLRRAIREIK--ERIDPLNDSLKRI 876
DUF3568 pfam12092
Protein of unknown function (DUF3568); This family of proteins is functionally uncharacterized. ...
 369-441 1.89e-04

Protein of unknown function (DUF3568); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 130 amino acids in length.


Pssm-ID: 403350  Cd Length: 124  Bit Score: 41.53  E-value: 1.89e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 487730061  369 EQVNEAREKALQKFNAS-KSKELETIQTSINHIISEGKKIKPIIEKLEDDNNNLQIKINEA--EERSARIQNKINK 441
Cdd:pfam12092  48 RSVYNATLAAIQDLNLSlVEKSKDGSSATITGKDAGDKTVFIRLEKLDDNSTKVSIRVGYFgdEQASRRLLDAIQK 123
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 243-532 5.75e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 43.13  E-value: 5.75e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061   243 AIIKQEIEQLENERI------DIQNGKEEINLRNQLADKQSELKRIE--DNNSASNENKIHTLTNELHVENGTVANLKTR 314
Cdd:TIGR02169  194 DEKRQQLERLRREREkaeryqALLKEKREYEGYELLKEKEALERQKEaiERQLASLEEELEKLTEEISELEKRLEEIEQL 273

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061   315 LKQNKQQITHE-ENRRNQLLENHKGLKSDLEKAKNQKFEYLDDnvcsccgqqlpAEQVNEAREKALQKFNASKSkELETI 393
Cdd:TIGR02169  274 LEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERE-----------LEDAEERLAKLEAEIDKLLA-EIEEL 341

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061   394 QTSINHIISEGKKIKPIIEKLEDDNNNLQIKINEAEERSARIQNKINKLKTTHVDVT-QTDEYKAVMLEINEINQKRSNI 472
Cdd:TIGR02169  342 EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKrEINELKRELDRLQEELQRLSEE 421

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061   473 RKTIQDNVSGIDDKISELTQEKSEIEvsRSIEKSNKHLDDVISELRNEEDRLLDEKEKYS 532
Cdd:TIGR02169  422 LADLNAAIAGIEAKINELEEEKEDKA--LEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
 400-575 6.18e-04

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 42.99  E-value: 6.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 400 IISEGKKIKPIIEKL--------EDDNNNLQI-KINEAEERSARIQNKINKLKTtHVDVTQTDEY---KAVMLEINEINQ 467
Cdd:PRK05771  11 IVTLKSYKDEVLEALhelgvvhiEDLKEELSNeRLRKLRSLLTKLSEALDKLRS-YLPKLNPLREekkKVSVKSLEELIK 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 468 KRSNIRKTIQDNVSGIDDKISELTQEKSEIEVSRSIEKSNKHLDDVISELRNEE---------DRLLDEKEKYSHDLYIL 538
Cdd:PRK05771  90 DVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKyvsvfvgtvPEDKLEELKLESDVENV 169

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 487730061 539 KEFTTTK---------VKMLTENINNEFEIAEFKLFNTLVNGELEE 575
Cdd:PRK05771 170 EYISTDKgyvyvvvvvLKELSDEVEEELKKLGFERLELEEEGTPSE 215
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 188-438 1.41e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.29  E-value: 1.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 188 KELNNIlgDHEIETKKKILTD---KIKQINKDIKDIPIRINQTQQNKQDVpefdNDRYAIIKQEIEQLEneridiqngKE 264
Cdd:COG4942   27 AELEQL--QQEIAELEKELAAlkkEEKALLKQLAALERRIAALARRIRAL----EQELAALEAELAELE---------KE 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 265 EINLRNQLADKQSELKRIedNNSASNENKIHTLTNELHVENGT-----VANLKTRLKQNKQQITHEENRRNQLLEnhkgL 339
Cdd:COG4942   92 IAELRAELEAQKEELAEL--LRALYRLGRQPPLALLLSPEDFLdavrrLQYLKYLAPARREQAEELRADLAELAA----L 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 340 KSDLEKAKNQKfeylddnvcsccgQQLPAEQvnEAREKALQKFNASKSKELETIQTSInhiisegKKIKPIIEKLEDDNN 419
Cdd:COG4942  166 RAELEAERAEL-------------EALLAEL--EEERAALEALKAERQKLLARLEKEL-------AELAAELAELQQEAE 223

                        250
                 ....*....|....*....
gi 487730061 420 NLQIKINEAEERSARIQNK 438
Cdd:COG4942  224 ELEALIARLEAEAAAAAER 242
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
178-540 1.73e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 41.59  E-value: 1.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 178 EDVIKTNDDFKELnnilgdheIETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVPEFDNdryaiIKQEIEQLENERI 257
Cdd:PRK03918 182 EKFIKRTENIEEL--------IKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-----LKEEIEELEKELE 248

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 258 DIQNGKEEI-----NLRNQLADKQSELKRIEDNNSASNENKihtltnELHVENGTVANLKTRLKQNKQQITHEENRRNQL 332
Cdd:PRK03918 249 SLEGSKRKLeekirELEERIEELKKEIEELEEKVKELKELK------EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEE 322

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 333 LENHKGLKSDLEKaKNQKFEYLDDNVCSCCGQQLPAEQVNEAREKALQKFNASKSKELETIQTSINHIISEGKKIKPIIE 412
Cdd:PRK03918 323 INGIEERIKELEE-KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE 401

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 413 KLEDDNNNLQIKINEAEERSARIQNKINKLKTTHVDVTQ-----TDEYKAVMLEinEINQKRSNIRKTIQDnvsgIDDKI 487
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgrelTEEHRKELLE--EYTAELKRIEKELKE----IEEKE 475

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 487730061 488 SELTQEKSEIEVSRSIEKSNKHLDDVISELRNEEDRL----LDEKEKYSHDLYILKE 540
Cdd:PRK03918 476 RKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLkkynLEELEKKAEEYEKLKE 532
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 359-540 1.79e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.29  E-value: 1.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 359 CSCCGQQLPAEQVNEAREKALQKFNASKsKELETIQTSINHIISEGKKIKPIIEKLEDDNNNLQIKINEAEERSARIQNK 438
Cdd:COG4942   13 LAAAAQADAAAEAEAELEQLQQEIAELE-KELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 439 INKLKTTHvdVTQTDEYKAVMLE----------------------------INEINQKRSNIRKTIQDNVSGIDDKISEL 490
Cdd:COG4942   92 IAELRAEL--EAQKEELAELLRAlyrlgrqpplalllspedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAEL 169

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 487730061 491 TQEKSEIEVSRS-IEKSNKHLDDVISELRNEEDRLLDEKEKYSHDLYILKE 540
Cdd:COG4942  170 EAERAELEALLAeLEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 198-376 1.83e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 40.29  E-value: 1.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 198 EIETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVpeFDNDRYAIIKQEIEQLENERIDIQngKEEINLRNQLADKQS 277
Cdd:COG1579   49 AAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV--RNNKEYEALQKEIESLKRRISDLE--DEILELMERIEELEE 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 278 ELKRIEDnnsasnenKIHTLTNELHVEngtVANLKTRLKQNKQQITHEENRRNQLLenhKGLKSDL----EKAKNQK--- 350
Cdd:COG1579  125 ELAELEA--------ELAELEAELEEK---KAELDEELAELEAELEELEAEREELA---AKIPPELlalyERIRKRKngl 190

                        170       180
                 ....*....|....*....|....*..
gi 487730061 351 -FEYLDDNVCSCCGQQLPAEQVNEARE 376
Cdd:COG1579  191 aVVPVEGGACGGCFMELPPQELNEIRA 217
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
186-349 2.23e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.16  E-value: 2.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 186 DFKELNNILgdhEIETKKKILTDKIKQINKDIKDIPIRINQTQ-----------QNKQDVPE-FDNDRYAIIKQEIEQLE 253
Cdd:COG3206  200 EFRQKNGLV---DLSEEAKLLLQQLSELESQLAEARAELAEAEarlaalraqlgSGPDALPElLQSPVIQQLRAQLAELE 276

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 254 NERIDI-QNGKEE----INLRNQLADKQSELKRIEDNNSASNENKIHTLTNElhvengtVANLKTRLKQNKQQITHEENR 328
Cdd:COG3206  277 AELAELsARYTPNhpdvIALRAQIAALRAQLQQEAQRILASLEAELEALQAR-------EASLQAQLAQLEARLAELPEL 349

                        170       180
                 ....*....|....*....|.
gi 487730061 329 RNQLLEnhkgLKSDLEKAKNQ 349
Cdd:COG3206  350 EAELRR----LEREVEVAREL 366
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 196-437 7.70e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.53  E-value: 7.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 196 DHEIETKKKILTDKIKQINKDIKDIpIRINQTQQNKQdvpefdnDRYAIIKQEIEQLENERIDIQngKEEINLRNQLADK 275
Cdd:COG1196  280 ELELEEAQAEEYELLAELARLEQDI-ARLEERRRELE-------ERLEELEEELAELEEELEELE--EELEELEEELEEA 349

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 276 QSELKRIEDNNSASNEnKIHTLTNELHVENGTVANLKTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKFEYLD 355
Cdd:COG1196  350 EEELEEAEAELAEAEE-ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 356 DnvcsccgqqlpAEQVNEAREKALQKFNASKSKELETIQTSINHIISEGKKIKpIIEKLEDDNNNLQIKINEAEERSARI 435
Cdd:COG1196  429 A-----------LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE-EAALLEAALAELLEELAEAAARLLLL 496


                 ..
gi 487730061 436 QN 437
Cdd:COG1196  497 LE 498
PLN03229 PLN03229
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
 244-524 9.10e-03

acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional


Pssm-ID: 178768 [Multi-domain]  Cd Length: 762  Bit Score: 39.07  E-value: 9.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 244 IIKQEIEQLENE-RIDIQNGKEEINLRNQLADKQSELKRIEDNNSASNEN---KIHTLTNELHV---ENGTVANLK---- 312
Cdd:PLN03229 459 ALNEMIEKLKKEiDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVlmeKIEKLKDEFNKrlsRAPNYLSLKykld 538

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 313 ------------------TRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKFEYLDDNVcsccgqqlpAEQVNEA 374
Cdd:PLN03229 539 mlnefsrakalsekkskaEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGDELDDDL---------KEKVEKM 609

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 375 R-EKALQKFNASKSKELETIQTSINHIISEGKKIKP-IIEKLEDDNNNLQIKINEAeERSARIQNKINKLKTTHVDVTQT 452
Cdd:PLN03229 610 KkEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPnLQEKIESLNEEINKKIERV-IRSSDLKSKIELLKLEVAKASKT 688

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 487730061 453 DEykavMLEINEINQKRSNIRKTIQD--NVSGIDDKISELTQE-KSEIEVSRSIEKSNKHLDDVISELRNEEDRL 524
Cdd:PLN03229 689 PD----VTEKEKIEALEQQIKQKIAEalNSSELKEKFEELEAElAAARETAAESNGSLKNDDDKEEDSKEDGSRV 759
46 PHA02562
endonuclease subunit; Provisional
 316-538 9.95e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 38.84  E-value: 9.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 316 KQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKFEYLDDNvcsccgqqlpaeqvnEAREKALQKFN---ASKSKELET 392
Cdd:PHA02562 209 KKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDI---------------EDPSAALNKLNtaaAKIKSKIEQ 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487730061 393 IQtSINHIISEGKKIKPIIEKLEDDNNnlqiKINEAEERSARIQNKINKLKTTHVDVTQ-TDEYKAVMLEINEINQKRSN 471
Cdd:PHA02562 274 FQ-KVIKMYEKGGVCPTCTQQISEGPD----RITKIKDKLKELQHSLEKLDTAIDELEEiMDEFNEQSKKLLELKNKIST 348

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 487730061 472 IRKTIqdnvSGIDDKISELTQEKSEIEVSRSIEKSNkhlddvISELRNEEDRLLDEKEKYSHDLYIL 538
Cdd:PHA02562 349 NKQSL----ITLVDKAKKVKAAIEELQAEFVDNAEE------LAKLQDELDKIVKTKSELVKEKYHR 405
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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