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Conserved domains on  [gi|488139926|ref|WP_002211134|]
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flagellar motor switch protein FliN [Yersinia pestis]

Protein Classification

flagellar motor switch protein FliN( domain architecture ID 11483010)

flagellar motor switch protein FliN is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
fliN PRK07963
flagellar motor switch protein FliN; Validated
 1-138 2.52e-89

flagellar motor switch protein FliN; Validated


:

Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 255.48  E-value: 2.52e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139926   1 MSDPKFPSADGKESVDDLWAYAFNEQQATeKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELL 80
Cdd:PRK07963   1 MSDMNNPSDDNNGAMDDLWAEALNEQKAT-SSKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELL 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 488139926  81 RLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITSSERMRRLSR 138
Cdd:PRK07963  80 RLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
 
Name Accession Description Interval E-value
fliN PRK07963
flagellar motor switch protein FliN; Validated
 1-138 2.52e-89

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 255.48  E-value: 2.52e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139926   1 MSDPKFPSADGKESVDDLWAYAFNEQQATeKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELL 80
Cdd:PRK07963   1 MSDMNNPSDDNNGAMDDLWAEALNEQKAT-SSKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELL 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 488139926  81 RLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITSSERMRRLSR 138
Cdd:PRK07963  80 RLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 3-128 2.60e-36

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 122.42  E-value: 2.60e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139926   3 DPKFPSADGKESVDDLWAYAFNEQQATEKPTATTEGVFKSLE-APEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELLR 81
Cdd:COG1886   46 PLLLLAAAGAALLLGLLDLLLEVGGLLLLGSDEEPAEFEPLEdAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLK 125

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 488139926  82 LSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 128
Cdd:COG1886  126 LGPGSVIELDRLAGEPVDILVNGRLIARGEVVVVDDRFGVRITEIVS 172
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 54-130 7.87e-36

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 118.08  E-value: 7.87e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488139926   54 DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITSS 130
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDSS 77
FliN_N pfam16973
Flagellar motor switch protein FliN N-terminal; FliN is one of three proteins that form a ...
 1-50 7.97e-27

Flagellar motor switch protein FliN N-terminal; FliN is one of three proteins that form a switch-complex at the base of the basal body of the flagellum; the switch regulates the flagellum-motor.


Pssm-ID: 435683  Cd Length: 50  Bit Score: 94.47  E-value: 7.97e-27
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 488139926    1 MSDPKFPSADGKESVDDLWAYAFNEQQATEKPTATTEGVFKSLEAPEGLG 50
Cdd:pfam16973   1 MSDPKKPSDDDNTSADDLWAEALNEQQATEKTAASTDGVFKSLEGQDALG 50
 
Name Accession Description Interval E-value
fliN PRK07963
flagellar motor switch protein FliN; Validated
 1-138 2.52e-89

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 255.48  E-value: 2.52e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139926   1 MSDPKFPSADGKESVDDLWAYAFNEQQATeKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELL 80
Cdd:PRK07963   1 MSDMNNPSDDNNGAMDDLWAEALNEQKAT-SSKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELL 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 488139926  81 RLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITSSERMRRLSR 138
Cdd:PRK07963  80 RLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
PRK08119 PRK08119
flagellar motor switch protein; Validated
 27-136 2.04e-41

flagellar motor switch protein; Validated


Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 141.15  E-value: 2.04e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139926  27 QATEKPTATTEG---VFKSLEAPEGLGNLQ-DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILI 102
Cdd:PRK08119 268 QEPEKEAQPVNVqpaQFQSFDPPPLATTEPrNLDLILDVPLQVTVELGRTKKSIKDILELGTGSIIELDKLAGEPVDILV 347

                         90       100       110
                 ....*....|....*....|....*....|....
gi 488139926 103 NGYLIAQGEVVVVADKYGVRITDIITSSERMRRL 136
Cdd:PRK08119 348 NGKLIAKGEVVVIDENFGVRITDIVSQSERIKSL 381
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 3-128 2.60e-36

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 122.42  E-value: 2.60e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139926   3 DPKFPSADGKESVDDLWAYAFNEQQATEKPTATTEGVFKSLE-APEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELLR 81
Cdd:COG1886   46 PLLLLAAAGAALLLGLLDLLLEVGGLLLLGSDEEPAEFEPLEdAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLK 125

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 488139926  82 LSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 128
Cdd:COG1886  126 LGPGSVIELDRLAGEPVDILVNGRLIARGEVVVVDDRFGVRITEIVS 172
fliN PRK08983
flagellar motor switch protein FliN;
13-136 5.00e-36

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 120.24  E-value: 5.00e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139926  13 ESVDDLWAYAFNEQQATEKPTATTEGvFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDG 92
Cdd:PRK08983   4 EDTADDWAAAMAEQALEEALAAELDE-LVDDSAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDR 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 488139926  93 LAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITSSERMRRL 136
Cdd:PRK08983  83 VAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKL 126
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 54-130 7.87e-36

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 118.08  E-value: 7.87e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488139926   54 DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITSS 130
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDSS 77
fliN PRK05698
flagellar motor switch protein FliN;
42-136 7.95e-36

flagellar motor switch protein FliN;


Pssm-ID: 168189 [Multi-domain]  Cd Length: 155  Bit Score: 120.68  E-value: 7.95e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139926  42 SLEAPeglgnlqDIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGV 121
Cdd:PRK05698  67 SLEGP-------NLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGI 139

                         90
                 ....*....|....*
gi 488139926 122 RITDIITSSERMRRL 136
Cdd:PRK05698 140 RLTDVISPSERIKKL 154
FliN_N pfam16973
Flagellar motor switch protein FliN N-terminal; FliN is one of three proteins that form a ...
 1-50 7.97e-27

Flagellar motor switch protein FliN N-terminal; FliN is one of three proteins that form a switch-complex at the base of the basal body of the flagellum; the switch regulates the flagellum-motor.


Pssm-ID: 435683  Cd Length: 50  Bit Score: 94.47  E-value: 7.97e-27
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 488139926    1 MSDPKFPSADGKESVDDLWAYAFNEQQATEKPTATTEGVFKSLEAPEGLG 50
Cdd:pfam16973   1 MSDPKKPSDDDNTSADDLWAEALNEQQATEKTAASTDGVFKSLEGQDALG 50
PRK08916 PRK08916
flagellar motor switch protein FliN;
54-129 5.37e-25

flagellar motor switch protein FliN;


Pssm-ID: 236350 [Multi-domain]  Cd Length: 116  Bit Score: 91.74  E-value: 5.37e-25
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488139926  54 DIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITS 129
Cdd:PRK08916  38 DLEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGSVLELDRKVGEAIDIYVNNRLVARGEVVLVEDRLGVTMTEIIKA 113
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 63-128 7.69e-24

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 87.39  E-value: 7.69e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488139926   63 VKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 128
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
PRK08432 PRK08432
flagellar motor switch protein FliY; Validated
 28-136 1.87e-20

flagellar motor switch protein FliY; Validated


Pssm-ID: 236264 [Multi-domain]  Cd Length: 283  Bit Score: 83.91  E-value: 1.87e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139926  28 ATEKPTATTEGVFKSLEAPEglgnLQDIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLI 107
Cdd:PRK08432 177 TTDSASEEIKTHKASLSNEE----IKNINMILDVKLPVRVRIGQKKMLLKDVLSMDIGSVVELNQLANDPLEILVDDKVI 252

                         90       100
                 ....*....|....*....|....*....
gi 488139926 108 AQGEVVVVADKYGVRITDIITSSERMRRL 136
Cdd:PRK08432 253 AKGEVVIVDGNFGIQITEIGTKKERLEQL 281
PRK08433 PRK08433
flagellar motor switch protein FliN;
30-138 7.56e-18

flagellar motor switch protein FliN;


Pssm-ID: 181423 [Multi-domain]  Cd Length: 111  Bit Score: 73.24  E-value: 7.56e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139926  30 EKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQ 109
Cdd:PRK08433   1 EKEKEKANKERELELSTYLEELICDYENLLDIEVDFSAELGTTQISLLEILKFEKGSVIDLEKPAGESVELYINGRIIGK 80

                         90       100
                 ....*....|....*....|....*....
gi 488139926 110 GEVVVVADKYGVRITDIITSSERMRRLSR 138
Cdd:PRK08433  81 GEVMVYEKNLAIRINEILDSNAVVYYLKK 109
PRK06782 PRK06782
flagellar motor switch protein; Reviewed
 6-127 1.02e-17

flagellar motor switch protein; Reviewed


Pssm-ID: 235861 [Multi-domain]  Cd Length: 528  Bit Score: 77.95  E-value: 1.02e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488139926   6 FPSADGKESVDDLWAYAFNEQQAT-------EKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKE 78
Cdd:PRK06782 400 LPISEAKEMVRLLLYPMVKEEEEIateeiepEKVVEPVVQPIEFKEVKQMEPVYMDTSILQDVPMNVKVVFGSTKKTIQD 479

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 488139926  79 LLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 127
Cdd:PRK06782 480 ILSLQENEVVVLDEDIDEPIRIYVNGVLVAYGELVNVDGFFGVKVTKSL 528
FliM COG1868
Flagellar motor switch protein FliM [Cell motility];
58-131 2.97e-14

Flagellar motor switch protein FliM [Cell motility];


Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 67.49  E-value: 2.97e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488139926  58 ILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITSSE 131
Cdd:COG1868  252 LEEAEVELSAELGETEITLRELLNLKVGDVIPLDKKVDDPLTVYVGGVPKFEGKPGVSNGRLAVKITEIIEEEE 325
SpaO_YscQ TIGR02551
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ...
 60-124 3.83e-13

type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274196 [Multi-domain]  Cd Length: 298  Bit Score: 64.35  E-value: 3.83e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488139926   60 DIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRIT 124
Cdd:TIGR02551 232 QLPVTLEFELGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGGRLGVRIL 296
PRK06033 PRK06033
flagellar motor switch protein FliN;
63-133 3.40e-11

flagellar motor switch protein FliN;


Pssm-ID: 180359 [Multi-domain]  Cd Length: 83  Bit Score: 55.54  E-value: 3.40e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488139926  63 VKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITSSERM 133
Cdd:PRK06033   9 VELMVVLGRSSMPIHQVLRMGRGAVIPLDATEADEVWILANNHPIARGEVLIDRNRIAVEVTRAADMLDRM 79
fliM PRK06666
flagellar motor switch protein FliM; Validated
 56-131 2.38e-08

flagellar motor switch protein FliM; Validated


Pssm-ID: 235849 [Multi-domain]  Cd Length: 337  Bit Score: 50.99  E-value: 2.38e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488139926  56 DLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITSSE 131
Cdd:PRK06666 253 QQVQQAEVELVAELGEIKLTLSEILNLKVGDVIPLEKPADDPLIVYVDGKPKFLCQYGKSNGRKALQIEELIEREL 328
PRK08158 PRK08158
YscQ/HrcQ family type III secretion apparatus protein;
60-123 4.69e-08

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181259 [Multi-domain]  Cd Length: 303  Bit Score: 50.25  E-value: 4.69e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488139926  60 DIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRI 123
Cdd:PRK08158 229 QLPVKLEFVLYRKNVTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMDDTLGVEI 292
PRK05933 PRK05933
type III secretion system protein; Validated
 64-126 5.65e-08

type III secretion system protein; Validated


Pssm-ID: 180315 [Multi-domain]  Cd Length: 372  Bit Score: 49.84  E-value: 5.65e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 488139926  64 KLSVELGRTKMTIKELLRLSQGSVVSLDGL-AGEPLDILINGYLIAQGEVVVVADKYGVRITDI 126
Cdd:PRK05933 309 KLVAEVARYSLSVGEFLKLGPGSILQFDGVhPTLGVDIILNGAKVGRGEIIALGDVLGIRVLEV 372
PRK06933 PRK06933
YscQ/HrcQ family type III secretion apparatus protein;
60-124 6.35e-08

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 235891 [Multi-domain]  Cd Length: 308  Bit Score: 49.73  E-value: 6.35e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488139926  60 DIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRIT 124
Cdd:PRK06933 236 QLPVQVSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRVE 300
PRK06789 PRK06789
flagellar motor switch protein; Validated
 60-126 9.62e-06

flagellar motor switch protein; Validated


Pssm-ID: 180694 [Multi-domain]  Cd Length: 74  Bit Score: 41.01  E-value: 9.62e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488139926  60 DIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 126
Cdd:PRK06789   6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGKMYVEIVEL 72
PRK06788 PRK06788
flagellar motor switch protein; Validated
 55-126 1.50e-05

flagellar motor switch protein; Validated


Pssm-ID: 180693 [Multi-domain]  Cd Length: 119  Bit Score: 41.40  E-value: 1.50e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488139926  55 IDLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 126
Cdd:PRK06788  28 IDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
PRK08035 PRK08035
YscQ/HrcQ family type III secretion apparatus protein;
60-124 1.63e-05

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181204 [Multi-domain]  Cd Length: 323  Bit Score: 42.88  E-value: 1.63e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488139926  60 DIPVKLSVELGRTKMTIKELLRLSQGSVVSLDG-LAGEpLDILINGYLIAQGEVVVVADKYGVRIT 124
Cdd:PRK08035 250 QLPQQVVMEIGRLSLPIGQLRQLAVGDVLPVGGcFYPE-VTIRLNGRIIGQGELLACDNELMVRIT 314
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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