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Conserved domains on  [gi|488149286|ref|WP_002220494|]
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MULTISPECIES: flagellar type III secretion system pore protein FliP [Yersinia pseudotuberculosis complex]

Protein Classification

flagellar type III secretion system pore protein FliP( domain architecture ID 10003557)

flagellar type III secretion system pore protein FliP plays a role in the flagellum-specific transport system

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
9-245 7.61e-132

Flagellar biosynthesis protein FliP [Cell motility];


:

Pssm-ID: 440949  Cd Length: 249  Bit Score: 371.75  E-value: 7.61e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286   9 LGLLTLFCSPSVLAQ--LPGI-ISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAP 85
Cdd:COG1338   10 LLLALLLLPAPALAQpgLPSLsLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTP 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  86 PNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVALDKGSQPLREFMLRQTRESDLALYARLANLPPLEGPEM 165
Cdd:COG1338   90 PNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPPPETPED 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286 166 VPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSFY 245
Cdd:COG1338  170 VPLRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRSFG 249
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
9-245 7.61e-132

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 371.75  E-value: 7.61e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286   9 LGLLTLFCSPSVLAQ--LPGI-ISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAP 85
Cdd:COG1338   10 LLLALLLLPAPALAQpgLPSLsLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTP 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  86 PNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVALDKGSQPLREFMLRQTRESDLALYARLANLPPLEGPEM 165
Cdd:COG1338   90 PNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPPPETPED 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286 166 VPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSFY 245
Cdd:COG1338  170 VPLRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRSFG 249
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 11-245 1.84e-124

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 352.96  E-value: 1.84e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  11 LLTLFCSPSVLAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVM 90
Cdd:PRK05699  11 LLLALASAAAAAPLPGLNLLPGANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTPPNQVL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  91 LGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVALDKGSQPLREFMLRQTRESDLALYARLANLPPlEGPEMVPMRI 170
Cdd:PRK05699  91 IGLALFLTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGEPP-KTPEDVPLSV 169

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488149286 171 LLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSFY 245
Cdd:PRK05699 170 LVPAFVLSELKTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSFG 244
FliP pfam00813
FliP family;
49-240 1.02e-105

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 303.57  E-value: 1.02e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286   49 ITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVAL 128
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  129 DKGSQPLREFMLRQTRESDLALYARLANLPPlEGPEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMAL 208
Cdd:pfam00813  81 ERASEPLREFMLKQTREKDLALFLDLAGQWP-ETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSM 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 488149286  209 GMMMVPPASISLPFKLMLFVLVDGWQLLLGSL 240
Cdd:pfam00813 160 GMMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 48-244 2.32e-100

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 290.44  E-value: 2.32e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286   48 FITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVA 127
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  128 LDKGSQPLREFMLRQTRESDLALYARLANLPPLEGPEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMA 207
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTRDKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMA 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 488149286  208 LGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 244
Cdd:TIGR01103 161 MGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
9-245 7.61e-132

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 371.75  E-value: 7.61e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286   9 LGLLTLFCSPSVLAQ--LPGI-ISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAP 85
Cdd:COG1338   10 LLLALLLLPAPALAQpgLPSLsLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTP 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  86 PNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVALDKGSQPLREFMLRQTRESDLALYARLANLPPLEGPEM 165
Cdd:COG1338   90 PNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPPPETPED 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286 166 VPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSFY 245
Cdd:COG1338  170 VPLRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRSFG 249
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 11-245 1.84e-124

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 352.96  E-value: 1.84e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  11 LLTLFCSPSVLAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVM 90
Cdd:PRK05699  11 LLLALASAAAAAPLPGLNLLPGANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTPPNQVL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  91 LGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVALDKGSQPLREFMLRQTRESDLALYARLANLPPlEGPEMVPMRI 170
Cdd:PRK05699  91 IGLALFLTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGEPP-KTPEDVPLSV 169

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488149286 171 LLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSFY 245
Cdd:PRK05699 170 LVPAFVLSELKTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSFG 244
PRK12430 PRK12430
putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
 9-245 6.53e-120

putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional


Pssm-ID: 237101 [Multi-domain]  Cd Length: 379  Bit Score: 346.49  E-value: 6.53e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286   9 LGLLTLFCsPSVLAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQ 88
Cdd:PRK12430 143 LVFLLLFC-PSAYADIPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQ 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  89 VMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVALDKGSQPLREFMLRQTRESDLALYARLANLPPLEGPEMVPM 168
Cdd:PRK12430 222 ILLGLALFLTFFIMSPTFDKIYKDAYLPFSQEKINMDDAILKGAMPLKKFMLNQTRTPDLELFSKLAHISSYKNKNEIPM 301

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488149286 169 RILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSFY 245
Cdd:PRK12430 302 RILLPSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSFN 378
FliP pfam00813
FliP family;
49-240 1.02e-105

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 303.57  E-value: 1.02e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286   49 ITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVAL 128
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  129 DKGSQPLREFMLRQTRESDLALYARLANLPPlEGPEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMAL 208
Cdd:pfam00813  81 ERASEPLREFMLKQTREKDLALFLDLAGQWP-ETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSM 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 488149286  209 GMMMVPPASISLPFKLMLFVLVDGWQLLLGSL 240
Cdd:pfam00813 160 GMMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 48-244 2.32e-100

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 290.44  E-value: 2.32e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286   48 FITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVA 127
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  128 LDKGSQPLREFMLRQTRESDLALYARLANLPPLEGPEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMA 207
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTRDKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMA 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 488149286  208 LGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 244
Cdd:TIGR01103 161 MGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
EscR COG4790
Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and ...
 42-244 1.35e-69

Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443819  Cd Length: 216  Bit Score: 212.73  E-value: 1.35e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  42 PVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVY---QEAYLPFS 118
Cdd:COG4790    7 PLSLILLLALLSLLPFLVVMGTSFLKISVVLSLLRNALGVQQVPPNMVLNGIALILTLFVMAPVGQEIYdrlQAAPVDFS 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286 119 qDKISMDVALDKGSQPLREFMLRQTRESDLALYARLA-NLPPLEGPEMVP---MRILLPAYVTSELKTAFQIGFTVFIPF 194
Cdd:COG4790   87 -SSASVLEAVDAGLEPLRDFLKKNTDPEERAFFLDAAqRLWPEEYAAKLKpddLLVLLPAFVLSELTSAFKIGFLLYLPF 165

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 488149286 195 LIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 244
Cdd:COG4790  166 VVIDLVVSNILLALGMMMVSPMTISLPFKLLLFVLVDGWTLLLHGLVLSY 215
PRK12797 PRK12797
type III secretion system protein YscR; Provisional
 42-240 1.87e-61

type III secretion system protein YscR; Provisional


Pssm-ID: 237210  Cd Length: 213  Bit Score: 192.01  E-value: 1.87e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  42 PVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVY---QEAYLPFs 118
Cdd:PRK12797   7 PLQLIILLALLSLLPLIAVMGTSFLKISVVLSLLRNALGVQQVPPNMALYGLALILTLFVMAPVGLAIQdrlQQPPLSL- 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286 119 QDKISMDVALDKGSQPLREFMLRQTRESDLALYARLAnlPPLEGPEMVP------MRILLPAYVTSELKTAFQIGFTVFI 192
Cdd:PRK12797  86 QDPDSVLQLLDAALAPLRDFLKKHTDERERTFFVRSA--QRIWPEEAADslkkddLLILIPAFTLSELTRAFEIGFLLYL 163

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 488149286 193 PFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSL 240
Cdd:PRK12797 164 PFIVIDLIISNILLAMGMMMVSPTTISLPFKLLLFVLVDGWSRLLHGL 211
fliP PRK12783
flagellar biosynthesis protein FliP; Reviewed
 31-245 1.98e-57

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 171720  Cd Length: 255  Bit Score: 183.15  E-value: 1.98e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  31 PLANGGQSWSLpVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVY 110
Cdd:PRK12783  40 PPGNGAASGRI-IQLVALLTVLSLAPGLLVMVTSFTRFAVALSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAW 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286 111 QEAYLPFSQDKISMDVALDKGSQPLREFMLRQTRESDLALYARLA--NLPPLEGPEMVPMRILLPAYVTSELKTAFQIGF 188
Cdd:PRK12783 119 NEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKDLQTFTDLAsrSFPKAEAGEKIDLRILIPAFMISELRRGFEIGF 198

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 488149286 189 TVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSFY 245
Cdd:PRK12783 199 LIVLPFLVIDMIVATIVMSMGMMMLPPTVISLPFKVLFFVLIDGWNLLVSGLVRSFF 255
PRK09617 PRK09617
type III secretion system protein; Reviewed
 47-244 1.25e-52

type III secretion system protein; Reviewed


Pssm-ID: 236593  Cd Length: 243  Bit Score: 170.69  E-value: 1.25e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  47 VFITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKI---- 122
Cdd:PRK09617  30 VILIFLALSPFLVMLLTSFLKIIIVLSLLRNALGVQQTPPSQVLNGIALILSIYIMFPTGVAMYNDAQKGIESNAVprsl 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286 123 -------SMDVALDKGSQPLREFMLRQTRESDLALYARLAN--LPPLEGPEMVP--MRILLPAYVTSELKTAFQIGFTVF 191
Cdd:PRK09617 110 fsaegaeTVFVAANKSKEPLRSFLIKNTPKPQIASFYKISQktFPPEIRDALTPsdFMIIIPAFIMGQLKNAFEIGVLIY 189

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 488149286 192 IPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 244
Cdd:PRK09617 190 LPFFVIDLVTANVLLAMGMMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 242
yscR TIGR01102
type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic ...
 46-240 3.14e-52

type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130172  Cd Length: 202  Bit Score: 168.29  E-value: 3.14e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286   46 LVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQ--DKIS 123
Cdd:TIGR01102   2 IAVLAALSLLPFIIVVGTSFLKISVVLGILRNALGVQQVPPNMALYGIALILSMFVMAPVGHQAQDRFHQEPVAysNIDF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  124 MDVALDKGSQPLREFMLRQTRESDLALYARLAN--LPPLEGPEMVP--MRILLPAYVTSELKTAFQIGFTVFIPFLIIDL 199
Cdd:TIGR01102  82 LQKSLDAGLAPYREFLKKNTDEDEVAFFERSTQkmWPKEMADRLKKdsLLILLPAFTLSELTAAFKIGFLLYLPFIVIDL 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 488149286  200 VVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSL 240
Cdd:TIGR01102 162 IVSNILLALGMMMVSPMTISLPFKLLLFVLIDGWSRLLHGL 202
spaP PRK12796
EscR/YscR/HrcR family type III secretion system export apparatus protein;
45-236 1.67e-35

EscR/YscR/HrcR family type III secretion system export apparatus protein;


Pssm-ID: 237209  Cd Length: 221  Bit Score: 125.86  E-value: 1.67e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286  45 TLVFITTLSFLPAAllmMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVY---QEAYLPFSQDK 121
Cdd:PRK12796  10 LLSFFTLLPFIIAS---GTCFIKFSIVFVMVRNALGLQQVPSNMTLNGIALLLSMFVMMPVIQDIYvyfQNEPVDFNNIA 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488149286 122 iSMDVALDKGSQPLREFMLRQTRESDLALYARLANLPPLEGPEMV--------PMRILLPAYVTSELKTAFQIGFTVFIP 193
Cdd:PRK12796  87 -SVVKFVDEGLGGYRDYLIKYSDPELVRFFERAQKKRSYGDEAEAndhdkdeiSLFSLLPAYALSEIKSAFKIGFYLYLP 165

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 488149286 194 FLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLL 236
Cdd:PRK12796 166 FVVVDLVVSSVLLALGMMMMSPVTISVPIKLILFVAMDGWTLL 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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