hemolysin XhlA family protein [[Clostridium] symbiosum]
List of domain hits
Name | Accession | Description | Interval | E-value | ||
XhlA super family | cl11371 | Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most ... |
28-79 | 9.90e-07 | ||
Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it. The actual alignment was detected with superfamily member pfam10779: Pssm-ID: 402419 [Multi-domain] Cd Length: 67 Bit Score: 43.04 E-value: 9.90e-07
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Name | Accession | Description | Interval | E-value | |||
XhlA | pfam10779 | Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most ... |
28-79 | 9.90e-07 | |||
Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it. Pssm-ID: 402419 [Multi-domain] Cd Length: 67 Bit Score: 43.04 E-value: 9.90e-07
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FliD | COG1345 | Flagellar capping protein FliD [Cell motility]; |
5-68 | 4.12e-05 | |||
Flagellar capping protein FliD [Cell motility]; Pssm-ID: 440956 [Multi-domain] Cd Length: 450 Bit Score: 41.36 E-value: 4.12e-05
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SMC_prok_A | TIGR02169 | chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
28-120 | 5.43e-04 | |||
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins] Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 38.13 E-value: 5.43e-04
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PRK13729 | PRK13729 | conjugal transfer pilus assembly protein TraB; Provisional |
43-86 | 1.01e-03 | |||
conjugal transfer pilus assembly protein TraB; Provisional Pssm-ID: 184281 [Multi-domain] Cd Length: 475 Bit Score: 37.11 E-value: 1.01e-03
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Name | Accession | Description | Interval | E-value | |||
XhlA | pfam10779 | Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most ... |
28-79 | 9.90e-07 | |||
Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it. Pssm-ID: 402419 [Multi-domain] Cd Length: 67 Bit Score: 43.04 E-value: 9.90e-07
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FliD | COG1345 | Flagellar capping protein FliD [Cell motility]; |
5-68 | 4.12e-05 | |||
Flagellar capping protein FliD [Cell motility]; Pssm-ID: 440956 [Multi-domain] Cd Length: 450 Bit Score: 41.36 E-value: 4.12e-05
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Exonuc_VII_L | pfam02601 | Exonuclease VII, large subunit; This family consist of exonuclease VII, large subunit EC:3.1. ... |
10-72 | 4.24e-05 | |||
Exonuclease VII, large subunit; This family consist of exonuclease VII, large subunit EC:3.1.11.6 This enzyme catalyzes exonucleolytic cleavage in either 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones. Pssm-ID: 426865 Cd Length: 264 Bit Score: 40.88 E-value: 4.24e-05
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Exonuc_VII_L | pfam02601 | Exonuclease VII, large subunit; This family consist of exonuclease VII, large subunit EC:3.1. ... |
8-80 | 6.37e-05 | |||
Exonuclease VII, large subunit; This family consist of exonuclease VII, large subunit EC:3.1.11.6 This enzyme catalyzes exonucleolytic cleavage in either 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones. Pssm-ID: 426865 Cd Length: 264 Bit Score: 40.50 E-value: 6.37e-05
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COG4913 | COG4913 | Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
30-98 | 2.45e-04 | |||
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.13 E-value: 2.45e-04
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SMC_prok_A | TIGR02169 | chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
28-120 | 5.43e-04 | |||
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins] Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 38.13 E-value: 5.43e-04
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PRK13729 | PRK13729 | conjugal transfer pilus assembly protein TraB; Provisional |
43-86 | 1.01e-03 | |||
conjugal transfer pilus assembly protein TraB; Provisional Pssm-ID: 184281 [Multi-domain] Cd Length: 475 Bit Score: 37.11 E-value: 1.01e-03
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SMC_prok_B | TIGR02168 | chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
23-120 | 1.52e-03 | |||
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins] Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 36.96 E-value: 1.52e-03
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XhlA | pfam10779 | Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most ... |
35-82 | 2.03e-03 | |||
Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it. Pssm-ID: 402419 [Multi-domain] Cd Length: 67 Bit Score: 34.18 E-value: 2.03e-03
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PRK13729 | PRK13729 | conjugal transfer pilus assembly protein TraB; Provisional |
23-80 | 2.45e-03 | |||
conjugal transfer pilus assembly protein TraB; Provisional Pssm-ID: 184281 [Multi-domain] Cd Length: 475 Bit Score: 36.34 E-value: 2.45e-03
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EnvC | COG4942 | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
28-97 | 3.76e-03 | |||
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 35.51 E-value: 3.76e-03
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Smc | COG1196 | Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
21-106 | 3.81e-03 | |||
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 35.68 E-value: 3.81e-03
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PRK12704 | PRK12704 | phosphodiesterase; Provisional |
28-105 | 4.25e-03 | |||
phosphodiesterase; Provisional Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 35.52 E-value: 4.25e-03
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CwlO1 | COG3883 | Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
33-102 | 4.49e-03 | |||
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown]; Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 35.58 E-value: 4.49e-03
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SMC_prok_B | TIGR02168 | chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1-98 | 6.62e-03 | |||
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins] Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 35.03 E-value: 6.62e-03
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EnvC | COG4942 | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
28-98 | 6.76e-03 | |||
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 34.74 E-value: 6.76e-03
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Smc | COG1196 | Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
20-120 | 8.63e-03 | |||
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 34.53 E-value: 8.63e-03
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PRK12704 | PRK12704 | phosphodiesterase; Provisional |
28-101 | 8.83e-03 | |||
phosphodiesterase; Provisional Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 34.37 E-value: 8.83e-03
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XhlA | pfam10779 | Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most ... |
50-94 | 9.55e-03 | |||
Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it. Pssm-ID: 402419 [Multi-domain] Cd Length: 67 Bit Score: 32.64 E-value: 9.55e-03
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Blast search parameters | ||||
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