NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|495817802|ref|WP_008542381|]
View 

transglycosylase domain-containing protein, partial [Sutterella parvirubra]

Protein Classification

penicillin-binding protein 1C( domain architecture ID 1008923)

penicillin-binding protein 1C has both transglycosylase and transpeptidase domains and is involved in forming cross-links in the late stages of peptidoglycan biosynthesis

EC:  2.4.1.129|3.4.16.4
Gene Ontology:  GO:0008658|GO:0004180|GO:0008955|GO:0009252

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PbpC super family cl34847
Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope ...
 57-308 3.01e-85

Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG4953:

Pssm-ID: 443980 [Multi-domain]  Cd Length: 773  Bit Score: 271.71  E-value: 3.01e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802  57 PAGAWLTAKLLPaPPMLEGVPFSSALTDRHGTLLELRLAEDGIYRLKTPLSEIPPAWIAATIHYEDRWFAKHPGVNVPAL 136
Cdd:COG4953   22 ALALWALDRLFP-LPLLFAVPYSTVVLDRDGTLLRAFLAADGQWRLPVPLDEVSPRYLQALLAYEDRRFYYHPGVNPLAL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802 137 FRALWGTVTH--RPMGASTLTMQLARIRLGlETRSVSGKLAQIFWALRYEAHYAKDEILEAYLNLAPYGGNIEGAGAAAR 214
Cdd:COG4953  101 LRAAWQNLRSgrIVSGGSTLTMQVARLLEP-RPRTLSGKLRQILRALQLERRYSKDEILELYLNLAPYGGNIEGVEAASL 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802 215 VWFGRAPAELTAAQAASLTIVPQNPVARRPGR--EAWREAFSRVGESLIAEGVFPETLAPAMRPEAAPAVtgPGKLPHLA 292
Cdd:COG4953  180 AYFGKPPSRLSLAEAALLAVLPQAPSRRRPDRnpERARAARDRVLARLAEAGVIDAEEAALALLEPVPAR--RRPLPQLA 257

                        250
                 ....*....|....*.
gi 495817802 293 RHDARLVAALAPGERV 308
Cdd:COG4953  258 PHLARRLLRQLPGGTR 273
 
Name Accession Description Interval E-value
PbpC COG4953
Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope ...
 57-308 3.01e-85

Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443980 [Multi-domain]  Cd Length: 773  Bit Score: 271.71  E-value: 3.01e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802  57 PAGAWLTAKLLPaPPMLEGVPFSSALTDRHGTLLELRLAEDGIYRLKTPLSEIPPAWIAATIHYEDRWFAKHPGVNVPAL 136
Cdd:COG4953   22 ALALWALDRLFP-LPLLFAVPYSTVVLDRDGTLLRAFLAADGQWRLPVPLDEVSPRYLQALLAYEDRRFYYHPGVNPLAL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802 137 FRALWGTVTH--RPMGASTLTMQLARIRLGlETRSVSGKLAQIFWALRYEAHYAKDEILEAYLNLAPYGGNIEGAGAAAR 214
Cdd:COG4953  101 LRAAWQNLRSgrIVSGGSTLTMQVARLLEP-RPRTLSGKLRQILRALQLERRYSKDEILELYLNLAPYGGNIEGVEAASL 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802 215 VWFGRAPAELTAAQAASLTIVPQNPVARRPGR--EAWREAFSRVGESLIAEGVFPETLAPAMRPEAAPAVtgPGKLPHLA 292
Cdd:COG4953  180 AYFGKPPSRLSLAEAALLAVLPQAPSRRRPDRnpERARAARDRVLARLAEAGVIDAEEAALALLEPVPAR--RRPLPQLA 257

                        250
                 ....*....|....*.
gi 495817802 293 RHDARLVAALAPGERV 308
Cdd:COG4953  258 PHLARRLLRQLPGGTR 273
PBP_1c TIGR02073
penicillin-binding protein 1C; This subfamily of the penicillin binding proteins includes the ...
 69-306 1.75e-72

penicillin-binding protein 1C; This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273954 [Multi-domain]  Cd Length: 727  Bit Score: 236.93  E-value: 1.75e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802   69 APPMLEGVPFSSALTDRHGTLLELRLAEDGIYRLKTPLSEIPPAWIAATIHYEDRWFAKHPGVNVPALFRALWGTVTH-- 146
Cdd:TIGR02073   1 PPPLLFHRPSSTVVLDRHGTLLRALLANDGQWRLPVPLEDISPKFLQALLLYEDKRFYWHPGVNPLALLRAAWQNLTNgr 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802  147 RPMGASTLTMQLARIRLGLETRSVSGKLAQIFWALRYEAHYAKDEILEAYLNLAPYGGNIEGAGAAARVWFGRAPAELTA 226
Cdd:TIGR02073  81 RVSGGSTLTMQLARLLDPELSRTLTGKLRQMWRAIQLEARYSKREILEAYLNLAPYGGNLEGLRAASLIYFGKEPSSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802  227 AQAASLTIVPQNPVARRPGR--EAWREAFSRVGESLIAEGVF-PETLAPAmrpEAAPAVTGPGKLPHLARHDARLVAALA 303
Cdd:TIGR02073 161 AEAALLAALPQAPSARRLDRlpKAAKAARDRLLDRMVEQGPDdSEQVALA---ALEPLPALPEPLPQLAPHFALKLLRAR 237


                  ...
gi 495817802  304 PGE 306
Cdd:TIGR02073 238 PEI 240
Transgly pfam00912
Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of ...
 86-256 1.19e-57

Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyzes the polymerization of murein glycan chains.


Pssm-ID: 459993 [Multi-domain]  Cd Length: 177  Bit Score: 183.49  E-value: 1.19e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802   86 HGTLLElrlAEDGIYRLKTPLSEIPPAWIAATIHYEDRWFAKHPGVNVPALFRALWGTVT--HRPMGASTLTMQLARIRL 163
Cdd:pfam00912   1 DGTLLA---ELGEENREYVPLDDIPPALKNAVLAIEDRRFYEHGGVDPKGIARALLSNLRsgRIVQGGSTITQQLAKNLF 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802  164 GLETRSVSGKLAQIFWALRYEAHYAKDEILEAYLNLAPYGGNIEGAGAAARVWFGRAPAELTAAQAASLTIVPQNPVARR 243
Cdd:pfam00912  78 LTPERTLTRKLKEAVLALKLERRYSKDEILEAYLNTVYFGRGAYGIEAAARAYFGKDASDLTLAEAALLAGLPQAPSRYN 157

                         170
                  ....*....|....*
gi 495817802  244 PGR--EAWREAFSRV 256
Cdd:pfam00912 158 PLRnpERAKRRRNLV 172
PRK11240 PRK11240
penicillin-binding protein 1C; Provisional
 57-309 5.25e-43

penicillin-binding protein 1C; Provisional


Pssm-ID: 183049 [Multi-domain]  Cd Length: 772  Bit Score: 157.17  E-value: 5.25e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802  57 PAGAWLTAKLLPAPpmLEGVPFSSALTDRHGTLLeLRLAE-DGIYRLKTPLSEIPPAWIAATIHYEDRWFAKHPGVNVPA 135
Cdd:PRK11240  20 FLALWLADKLWPLP--LHEVNPARVVVAEDGTPL-WRFADaDGIWRYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFS 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802 136 LFRALWGTVTHRPM--GASTLTMQLARIrLGLETRSVSGKLAQIFWALRYEAHYAKDEILEAYLNLAPYGGNIEGAGAAA 213
Cdd:PRK11240  97 VARAAWQDLTSGRVisGGSTLTMQVARL-LDPHPRTFGGKIRQLWRALQLEWHLSKREILTLYLNRAPFGGTLQGIGAAS 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802 214 RVWFGRAPAELTAAQAASLTIVPQNPVARRPGREAWR--EAFSRVGESLIAEGVFPETLAPAMRPEaaPAVTGPGKLPHL 291
Cdd:PRK11240 176 WAYLGKSPANLSYAEAALLAVLPQAPSRLRPDRWPERaeAARNKVLERMAEQGVWSAEQVKESREE--PVWLAPRQMPQL 253

                        250
                 ....*....|....*...
gi 495817802 292 ARHDARLVAALAPGERVR 309
Cdd:PRK11240 254 APLFARMMLGKSKSDKIV 271
 
Name Accession Description Interval E-value
PbpC COG4953
Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope ...
 57-308 3.01e-85

Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443980 [Multi-domain]  Cd Length: 773  Bit Score: 271.71  E-value: 3.01e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802  57 PAGAWLTAKLLPaPPMLEGVPFSSALTDRHGTLLELRLAEDGIYRLKTPLSEIPPAWIAATIHYEDRWFAKHPGVNVPAL 136
Cdd:COG4953   22 ALALWALDRLFP-LPLLFAVPYSTVVLDRDGTLLRAFLAADGQWRLPVPLDEVSPRYLQALLAYEDRRFYYHPGVNPLAL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802 137 FRALWGTVTH--RPMGASTLTMQLARIRLGlETRSVSGKLAQIFWALRYEAHYAKDEILEAYLNLAPYGGNIEGAGAAAR 214
Cdd:COG4953  101 LRAAWQNLRSgrIVSGGSTLTMQVARLLEP-RPRTLSGKLRQILRALQLERRYSKDEILELYLNLAPYGGNIEGVEAASL 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802 215 VWFGRAPAELTAAQAASLTIVPQNPVARRPGR--EAWREAFSRVGESLIAEGVFPETLAPAMRPEAAPAVtgPGKLPHLA 292
Cdd:COG4953  180 AYFGKPPSRLSLAEAALLAVLPQAPSRRRPDRnpERARAARDRVLARLAEAGVIDAEEAALALLEPVPAR--RRPLPQLA 257

                        250
                 ....*....|....*.
gi 495817802 293 RHDARLVAALAPGERV 308
Cdd:COG4953  258 PHLARRLLRQLPGGTR 273
PBP_1c TIGR02073
penicillin-binding protein 1C; This subfamily of the penicillin binding proteins includes the ...
 69-306 1.75e-72

penicillin-binding protein 1C; This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273954 [Multi-domain]  Cd Length: 727  Bit Score: 236.93  E-value: 1.75e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802   69 APPMLEGVPFSSALTDRHGTLLELRLAEDGIYRLKTPLSEIPPAWIAATIHYEDRWFAKHPGVNVPALFRALWGTVTH-- 146
Cdd:TIGR02073   1 PPPLLFHRPSSTVVLDRHGTLLRALLANDGQWRLPVPLEDISPKFLQALLLYEDKRFYWHPGVNPLALLRAAWQNLTNgr 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802  147 RPMGASTLTMQLARIRLGLETRSVSGKLAQIFWALRYEAHYAKDEILEAYLNLAPYGGNIEGAGAAARVWFGRAPAELTA 226
Cdd:TIGR02073  81 RVSGGSTLTMQLARLLDPELSRTLTGKLRQMWRAIQLEARYSKREILEAYLNLAPYGGNLEGLRAASLIYFGKEPSSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802  227 AQAASLTIVPQNPVARRPGR--EAWREAFSRVGESLIAEGVF-PETLAPAmrpEAAPAVTGPGKLPHLARHDARLVAALA 303
Cdd:TIGR02073 161 AEAALLAALPQAPSARRLDRlpKAAKAARDRLLDRMVEQGPDdSEQVALA---ALEPLPALPEPLPQLAPHFALKLLRAR 237


                  ...
gi 495817802  304 PGE 306
Cdd:TIGR02073 238 PEI 240
Transgly pfam00912
Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of ...
 86-256 1.19e-57

Transglycosylase; The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyzes the polymerization of murein glycan chains.


Pssm-ID: 459993 [Multi-domain]  Cd Length: 177  Bit Score: 183.49  E-value: 1.19e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802   86 HGTLLElrlAEDGIYRLKTPLSEIPPAWIAATIHYEDRWFAKHPGVNVPALFRALWGTVT--HRPMGASTLTMQLARIRL 163
Cdd:pfam00912   1 DGTLLA---ELGEENREYVPLDDIPPALKNAVLAIEDRRFYEHGGVDPKGIARALLSNLRsgRIVQGGSTITQQLAKNLF 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802  164 GLETRSVSGKLAQIFWALRYEAHYAKDEILEAYLNLAPYGGNIEGAGAAARVWFGRAPAELTAAQAASLTIVPQNPVARR 243
Cdd:pfam00912  78 LTPERTLTRKLKEAVLALKLERRYSKDEILEAYLNTVYFGRGAYGIEAAARAYFGKDASDLTLAEAALLAGLPQAPSRYN 157

                         170
                  ....*....|....*
gi 495817802  244 PGR--EAWREAFSRV 256
Cdd:pfam00912 158 PLRnpERAKRRRNLV 172
MrcB COG0744
Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall ...
 67-244 3.06e-45

Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440507 [Multi-domain]  Cd Length: 630  Bit Score: 162.01  E-value: 3.06e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802  67 LPAPPMLEGV--PFSSALTDRHGTLLELRLAEDGIYrlkTPLSEIPPAWIAATIHYEDRWFAKHPGVNVPALFRALWGTV 144
Cdd:COG0744   41 LPDPEELEDLalPQTSTIYDRDGTLIATLGDENREW---VPLDQIPPHLKDAVVAIEDRRFYEHGGVDPKGIARALVANL 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802 145 THRPM--GASTLTMQLARIRLGLETRSVSGKLAQIFWALRYEAHYAKDEILEAYLNLAPYGGNIEGAGAAARVWFGRAPA 222
Cdd:COG0744  118 TAGGVvqGGSTITQQLVKNLFLSNERTLSRKLKEALLALKLERKYSKDEILELYLNTVYFGRGAYGIEAAAQYYFGKSAS 197

                        170       180
                 ....*....|....*....|..
gi 495817802 223 ELTAAQAASLTIVPQNPVARRP 244
Cdd:COG0744  198 DLTLAEAALLAGLVKAPSYYDP 219
PRK11240 PRK11240
penicillin-binding protein 1C; Provisional
 57-309 5.25e-43

penicillin-binding protein 1C; Provisional


Pssm-ID: 183049 [Multi-domain]  Cd Length: 772  Bit Score: 157.17  E-value: 5.25e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802  57 PAGAWLTAKLLPAPpmLEGVPFSSALTDRHGTLLeLRLAE-DGIYRLKTPLSEIPPAWIAATIHYEDRWFAKHPGVNVPA 135
Cdd:PRK11240  20 FLALWLADKLWPLP--LHEVNPARVVVAEDGTPL-WRFADaDGIWRYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFS 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802 136 LFRALWGTVTHRPM--GASTLTMQLARIrLGLETRSVSGKLAQIFWALRYEAHYAKDEILEAYLNLAPYGGNIEGAGAAA 213
Cdd:PRK11240  97 VARAAWQDLTSGRVisGGSTLTMQVARL-LDPHPRTFGGKIRQLWRALQLEWHLSKREILTLYLNRAPFGGTLQGIGAAS 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802 214 RVWFGRAPAELTAAQAASLTIVPQNPVARRPGREAWR--EAFSRVGESLIAEGVFPETLAPAMRPEaaPAVTGPGKLPHL 291
Cdd:PRK11240 176 WAYLGKSPANLSYAEAALLAVLPQAPSRLRPDRWPERaeAARNKVLERMAEQGVWSAEQVKESREE--PVWLAPRQMPQL 253

                        250
                 ....*....|....*...
gi 495817802 292 ARHDARLVAALAPGERVR 309
Cdd:PRK11240 254 APLFARMMLGKSKSDKIV 271
MrcA COG5009
Membrane carboxypeptidase/penicillin-binding protein [Cell wall/membrane/envelope biogenesis];
101-239 5.22e-33

Membrane carboxypeptidase/penicillin-binding protein [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 444033 [Multi-domain]  Cd Length: 785  Bit Score: 128.35  E-value: 5.22e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802 101 RLKTPLSEIPP----AWIAAtihyEDRWFAKHPGVNVPALFRALWGTVT--HRPMGASTLTMQLAR-IRLGLEtRSVSGK 173
Cdd:COG5009   66 RIPVPIEEIPPllinAFLAA----EDKRFYEHPGVDPIGIARAAVVNLRtgRRVQGGSTITQQVAKnFLLSPE-RTLTRK 140

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 495817802 174 LAQIFWALRYEAHYAKDEILEAYLNLAPYGGNIEGAGAAARVWFGRAPAELTAAQAASLTIVPQNP 239
Cdd:COG5009  141 IKEAILALRIEQELSKDEILELYLNKIYLGHRAYGVAAAAQTYFGKSLDELTLAEAAMLAGLPKAP 206
mrcA PRK11636
penicillin-binding protein 1a; Provisional
 101-239 4.70e-21

penicillin-binding protein 1a; Provisional


Pssm-ID: 183248 [Multi-domain]  Cd Length: 850  Bit Score: 93.66  E-value: 4.70e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802 101 RLKTPLSEIPPAWIAATIHYEDRWFAKHPGVNVPALFRALWGTVT--HRPMGASTLTMQLARIRLGLETRSVSGKLAQIF 178
Cdd:PRK11636  66 RIPLTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAASVALFsgHASQGASTITQQLARNFFLSPERTLMRKIKEAF 145

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 495817802 179 WALRYEAHYAKDEILEAYLNLAPYGGNIEGAGAAARVWFGRAPAELTAAQAASLTIVPQNP 239
Cdd:PRK11636 146 LAIRIEQLLTKDEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLSEMAVIAGLPKAP 206
PRK14850 PRK14850
penicillin-binding protein 1b; Provisional
 89-232 2.52e-17

penicillin-binding protein 1b; Provisional


Pssm-ID: 237835 [Multi-domain]  Cd Length: 764  Bit Score: 82.20  E-value: 2.52e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802  89 LLELRLAEDGIYRLKTPLSEIPPAWIAATIHYEDRWFAKHPGVNVPALFRALWGTVT--HRPMGASTLTMQLARIRLGLE 166
Cdd:PRK14850 145 LIAMLYSPEGKKRLFIPRNQYPEMLIKTLLAIEDKYFYEHDGIHLSSIGRAFLVNLMsgHTIQGGSTLTQQLVKNLFLTN 224

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802 167 TRSVSGKLAQIFWALRYEAHYAKDEILEAYLNLAPYGGN----IEGAGAAARVWFGRAPAELTAAQAASL 232
Cdd:PRK14850 225 TRSLWRKINEIYMALILDRFYSKDRILELYLNEVYLGQDgneqIRGFPLASIYYFGRPINELNLDQYALL 294
PRK13481 PRK13481
glycosyltransferase; Provisional
 105-218 6.33e-15

glycosyltransferase; Provisional


Pssm-ID: 184078 [Multi-domain]  Cd Length: 232  Bit Score: 72.53  E-value: 6.33e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802 105 PLSEIPPAWIAATIHYEDRWFAKHPGVNVPALFRALWGTVTHRPM-GASTLTMQLARIRLGLETRSVSGKLAQIFWALRY 183
Cdd:PRK13481  49 SADNMPEYVKGAFISMEDERFYKHHGFDLKGTTRALFSTISDRDVqGGSTITQQVVKNYFYDNERSFTRKVKELFVAHRV 128

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 495817802 184 EAHYAKDEILEAYLNLAPYGGNIEGAGAAARVWFG 218
Cdd:PRK13481 129 EKQYSKNEILSFYLNNIYFGDNQYTLEGAANHYFG 163
mrcB PRK09506
bifunctional glycosyl transferase/transpeptidase; Reviewed
 97-232 1.51e-13

bifunctional glycosyl transferase/transpeptidase; Reviewed


Pssm-ID: 236544 [Multi-domain]  Cd Length: 830  Bit Score: 70.95  E-value: 1.51e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495817802  97 DGIYRLKTPLSEIPPAWIAATIHYEDRWFAKHPGVNVPALFRALWGTVT--HRPMGASTLTMQLARIRLGLETRSVSGKL 174
Cdd:PRK09506 207 NGEQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTagRTVQGGSTLTQQLVKNLFLSNERSLWRKA 286

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495817802 175 AQIFWALRYEAHYAKDEILEAYLN---LAPYGGN-IEGAGAAARVWFGRAPAELTAAQAASL 232
Cdd:PRK09506 287 NEAYMALIMDARYSKDRILELYLNevyLGQSGDDqIRGFPLASLYYFGRPVEELSLDQQALL 348
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH